Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

Edgar, R.·2002·Nucleic Acids Research

DOI 10.1093/nar/30.1.207

Cited by (1,109)

Items 701–800 of 1,109

Discovery of molecular subtypes in leiomyosarcoma through integrative molecular profiling
Andrew H. Beck, C-H Lee, Daniela Witten, Bill Gleason, Badreddin Edris, Íñigo Espinosa, Shirley Zhu, R Li, Kelli D. Montgomery, Robert J. Marinelli et al. · 2009 · Oncogene
LEA polypeptide profiling of recalcitrant and orthodox legume seeds reveals ABI3-regulated LEA protein abundance linked to desiccation tolerance
Julien Delahaie, Michaela Hundertmark, Jérôme Bove, Olivier Leprince, Hélène Rogniaux, Julia Buitink · 2013 · Journal of Experimental Botany
Immunological Outcome in Haploidentical-HSC Transplanted Patients Treated with IL-10-Anergized Donor T Cells
Rosa Bacchetta, Barbarella Lucarelli, Claudia Sartirana, Silvia Gregori, Maria Teresa Lupo Stanghellini, Patrick Miqueu, Stefan Tomiuk, María P. Hernández-Fuentes, Monica E. Gianolini, Raffaella Greco et al. · 2014 · Frontiers in Immunology
Anomalies in the Expression Profile of Interspecific Hybrids of Drosophila melanogaster and Drosophila simulans
José M. Ranz, Kalsang Namgyal, Greg C. Gibson, Daniel L. Hartl · 2004 · Genome Research
A data citation roadmap for scientific publishers
Helena Cousijn, Amye Kenall, Emma Ganley, Melissa Harrison, David Kernohan, Thomas Lemberger, Fiona Louise Mary Murphy, Patrick Polischuk, Simone Taylor, Maryann Elizabeth Martone et al. · 2018 · Scientific Data
The PhoP-Dependent ncRNA Mcr7 Modulates the TAT Secretion System in Mycobacterium tuberculosis
Solans, Luis, Gonzalo-Asensio, Jesús, Sala, Claudia, Benjak, Andrej, Uplekar, Swapna, Rougemont, Jacques, Guilhot, Christophe, Malaga, Wladimir, Martín, Carlos, Cole, Stewart T. · 2014 · PLoS Pathogens
Carbon availability triggers the decomposition of plant litter and assimilation of nitrogen by an ectomycorrhizal fungus
François Rineau, Firoz Shah, Mark M. Smits, Per Persson, T Johansson, Robert Carleer, Carl Troein, Anders Tunlid · 2013 · The ISME Journal
Optimal Deconvolution of Transcriptional Profiling Data Using Quadratic Programming with Application to Complex Clinical Blood Samples
Ting Gong, Nicole Hartmann, Isaac S. Kohane, Volker Brinkmann, Frank Staedtler, Martin Letzkus, Sandrine Bongiovanni, Joseph D. Szustakowski · 2011 · PLoS ONE
Somatic NF1 inactivation is a frequent event in sporadic pheochromocytoma
Nelly Burnichon, Alexandre Buffet, Béatrice Parfait, Éric Letouzé, Ingrid Laurendeau, Céline Loriot, Éric Pasmant, Nasséra Abermil, L. Valeyrie‐Allanore, Jerome Yves Bertherat et al. · 2012 · Human Molecular Genetics
High Persister Mutants in Mycobacterium tuberculosis
Heather L. Torrey, Iris Keren, Laura E. Via, Jong Seok Lee, Kim Lewis · 2016 · PLoS ONE
Knock‐down of the methyltransferase Kmt6 relieves H3K27me3 and results in induction of cryptic and otherwise silent secondary metabolite gene clusters in Fusarium fujikuroi
Lena Studt, Sarah M. Rösler, Immo Burkhardt, Birgit Arndt, Michael Freitag, Hans‐Ulrich Humpf, Jeroen S. Dickschat, Bettina Tudzynski · 2016 · Environmental Microbiology
VRS2 regulates hormone-mediated inflorescence patterning in barley
Helmy M. Youssef, Kai Eggert, Ravi Koppolu, Ahmad M. Alqudah, Naser Poursarebani, Arash Fazeli, Shun Sakuma, Akemi Tagiri, Twan L. M. Rutten, Geetha Govind et al. · 2016 · Nature Genetics
Neoadjuvant talimogene laherparepvec plus surgery versus surgery alone for resectable stage IIIB–IVM1a melanoma: a randomized, open-label, phase 2 trial
Reinhard Dummer, David E. Gyorki, John Robert Hyngstrom, Adam C. Berger, Robert Martin Conry, Лев Вадимович Демидов, A. Sharma, Sheryl Treichel, Hoi-Shen Radcliffe, Kevin S. Gorski et al. · 2021 · Nature Medicine
Performance evaluation of commercial short-oligonucleotide microarrays and the impact of noise in making cross-platform correlations
Richard Shippy, Timothy J. Sendera, Randall Lockner, Chockalingam Palaniappan, Tamma Kaysser-Kranich, George S. Watts, John P. Alsobrook · 2004 · BMC Genomics
IL-17-induced NF-κB Activation via CIKS/Act1
Søren Ulrik Sønder, Sun Saret, Wanhu Tang, Dan E. Sturdevant, Stephen F. Porcella, Ulrich K. Siebenlist · 2011 · Journal of Biological Chemistry
Dissecting Interferon-Induced Transcriptional Programs in Human Peripheral Blood Cells
Simon J. Waddell, Stephen J. Popper, Kathleen Rubins, Michael John Griffiths, Patrick O. Brown, Michael Levin, David A. Relman · 2010 · PLoS ONE
Protein acetylation affects acetate metabolism, motility and acid stress response in Escherichia coli
Sara Castaño‐Cerezo, Vicente Bernal, Harm Post, Tobias Fuhrer, Salvatore Cappadona, Nerea C Sánchez‐Díaz, Uwe Sauer, Albert J. R. Heck, Maarten A. F. Altelaar, Manuel Cánovas · 2014 · Molecular Systems Biology
The Y chromosome as a regulatory element shaping immune cell transcriptomes and susceptibility to autoimmune disease
Laure K. Case, Emma H. Wall, Julie A. Dragon, Naresha Saligrama, Dimitry N. Krementsov, Mohamad Moussawi, James F. Zachary, Sally Ann Huber, Elizabeth P. Blankenhorn, Cory Teuscher · 2013 · Genome Research
Genome-based analysis of the nonhuman primate Macaca fascicularis as a model for drug safety assessment
Martin Ebeling, Erich Küng, Angela See, Clemens Broger, Guido Steiner, Marco Berrera, Tobias Heckel, Leonardo A. Iniguez, Thomas Albert, Roland Schmucki et al. · 2011 · Genome Research
Microarray Analysis of Lymphatic Tissue Reveals Stage-Specific, Gene Expression Signatures in HIV-1 Infection
Qing-Sheng Li, A. Smith, T. Schacker, J. Carlis, L. Duan, Cavan Reilly, A. Haase · 2009 · Journal of Immunology
Testing the Limits of 454 Pyrotag Sequencing: Reproducibility, Quantitative Assessment and Comparison to T-RFLP Fingerprinting of Aquifer Microbes
Giovanni Pilloni, Michael S. Granitsiotis, Marion Engel, Tillmann Lueders · 2012 · PLoS ONE
Differential variability analysis of gene expression and its application to human diseases
Joshua W. K. Ho, Maurizio Stefani, Cristobal G. dos Remedios, Michael Charleston · 2008 · Bioinformatics
Infection Exposure Is a Causal Factor in B-cell Precursor Acute Lymphoblastic Leukemia as a Result of Pax5 -Inherited Susceptibility
Alberto Martín‐Lorenzo, Julia Hauer, Carolina Vicente‐Dueñas, Franziska Auer, Inés González‐Herrero, Idoia García‐Ramírez, Sebastian Ginzel, Ralf Thiele, Stefan N. Constantinescu, Christoph Bartenhagen et al. · 2015 · Cancer Discovery
Bioinformatics Approaches for Anti-cancer Drug Discovery
Kening Li, Yuxin Du, Lu Li, Dong‐Qing Wei · 2019 · Current Drug Targets
Epigenetic footprint enables molecular risk stratification of hepatoblastoma with clinical implications
Juan Carrillo-Reixach, Laura Torrens, Marina Simon‐Coma, Laura Royo, Montserrat Domingo-Sàbat, Jordi Abril‐Fornaguera, Nicholas K. Akers, Margarita Sala, Sonia Ragull, Magdalena Arnal et al. · 2020 · Journal of Hepatology
Abandon the Mouse Research Ship? Not Just Yet!
Marcin Filip Osuchowski, Daniel George Remick, James Arthur Lederer, Charles H. Lang, Ansgar Oddne Aasen, Mayuki Aibiki, Luciano C. P. Azevedo, Soheyl Bahrami, Mihály Boros, Robert N. Cooney et al. · 2014 · Shock
KDM5B focuses H3K4 methylation near promoters and enhancers during embryonic stem cell self-renewal and differentiation
Benjamin L. Kidder, Gangqing Hu, Keji Zhao · 2014 · Genome biology
Expression Analysis in Multiple Muscle Groups and Serum Reveals Complexity in the MicroRNA Transcriptome of the mdx Mouse with Implications for Therapy
Thomas C. Roberts, K. Emelie M. Blomberg, Graham McClorey, Samir EL Andaloussi, Caroline Godfrey, Corinne Betts, Thibault Coursindel, Michael John Gait, CI Edvard Smith, Matthew J. A. Wood · 2012 · Molecular Therapy — Nucleic Acids
Hypocotyl Transcriptome Reveals Auxin Regulation of Growth-Promoting Genes through GA-Dependent and -Independent Pathways
Elisabeth J. Chapman, Kathleen Greenham, Cristina Castillejo, Ryan C. Sartor, Agniezska Bialy, Tai‐ping Sun, Mark A. Estelle · 2012 · PLoS ONE
Effects of temperature on gene expression in embryos of the coral Montastraea faveolata
Christian Robert Voolstra, Julia Schnetzer, Leonid Peshkin, Carly J. Randall, Alina M. Szmant, Mónica Medina · 2009 · BMC Genomics
Selective gene-expression profiling of migratory tumor cells in vivo predicts clinical outcome in breast cancer patients
Antonia Patsialou, Yarong Wang, Juan Lin, Kathleen D. Whitney, Sumanta Goswami, Paraic A. Kenny, John S. Condeelis · 2012 · Breast Cancer Research
Cross-Laboratory Analysis of Brain Cell Type Transcriptomes with Applications to Interpretation of Bulk Tissue Data
Burak Ogan Mancarci, Lilah Toker, Shreejoy J. Tripathy, Brenna Li, Brad R. Rocco, Etienne L. Sibille, Paul Pavlidis · 2017 · eNeuro
A Mobile Auxin Signal Connects Temperature Sensing in Cotyledons with Growth Responses in Hypocotyls
Julia BellstĂ¤dt, Jana Trenner, Rebecca Lippmann, Yvonne Poeschl, Xixi Zhang, Jiřı́ Friml, Marcel Quint, Carolin Delker · 2019 · PLANT PHYSIOLOGY
A cell atlas foundation model for scalable search of similar human cells
Graham Heimberg, Tony Chien-Yen Kuo, Daryle J. DePianto, Omar Salem, Tobias Heigl, Nathaniel Diamant, Gabriele Scalia, Tommaso Biancalani, Shannon J. Turley, Jason R. Rock et al. · 2024 · Nature
Discovery and Validation of New Potential Biomarkers for Early Detection of Colon Cancer
Xavier Solé, Marta Crous‐Bou, David Cordero, David Olivares, Elisabet Guinó, Rebeca Sanz Pamplona, Francisco Rodríguez‐Moranta, Xavier Sanjuán, Javier de, Ramón Salazar et al. · 2014 · PLoS ONE
Smooth quantile normalization
Stephanie C. Hicks, Kwame Okrah, Joseph Nathaniel Paulson, John F Quackenbush, Rafael A. Irizarry, Héctor Corrada Bravo · 2017 · Biostatistics
poly(UG)-tailed RNAs in genome protection and epigenetic inheritance
Aditi Shukla, Jenny Jiacheng Yan, Daniel J. Pagano, Anne E. Dodson, Yuhan Fei, Josh M. Gorham, Jonathan G. Seidman, Marvin Wickens, Scott G. Kennedy · 2020 · Nature
Enzymatic Dissociation Induces Transcriptional and Proteotype Bias in Brain Cell Populations
Mattei, Daniele, Ivanov, Andranik, van Oostrum, Marc, Pantelyushin, Stanislav, Richetto, Juliet, Mueller, Flavia, Beffinger, Michal, Schellhammer, Linda, vom Berg, Johannes, Wollscheid, Bernd et al. · 2020 · International Journal of Molecular Sciences
Enzymatic dissociation induces transcriptional and proteotype bias in brain cell populations
Mattei, Daniele, Ivanov, Andranik, van Oostrum, Marc, Pantelyushin, Stanislav, Richetto, Juliet, Mueller, Flavia, Beffinger, Michal Matheus, Schellhammer, Linda, vom Berg, Johannes, Wollscheid, Bernd et al. · 2020
Peptidoglycan Recognition Proteins Protect Mice from Experimental Colitis by Promoting Normal Gut Flora and Preventing Induction of Interferon-γ
Saha, Sukumar, Jing, Xuefang, Park, Shin Yong, Wang, Shiyong, Li, Xinna, Gupta, Dipika, Dziarski, Roman · 2010 · Cell Host & Microbe
Whole-genome reconstruction and mutational signatures in gastric cancer
Niranjan Nagarajan, Denis Bertrand, Axel M. Hillmer, Zhi Jiang Zang, Fei Yao, Pierre‐Étienne Jacques, Audrey S.M. Teo, Ioana Cutcutache, Zhenshui Zhang, Wah Lee et al. · 2012 · Genome biology
A gene signature in histologically normal surgical margins is predictive of oral carcinoma recurrence
Patrícia P. Reis, Levi Waldron, Bayardo Perez‐Ordoñez, Melania Pintilie, Natalie Naranjo Galloni, Yali Xuan, Nilva K. Cervigne, Giles C. Warner, Antti A. Mäkitie, Colleen Simpson et al. · 2011 · BMC Cancer
Night/Day Changes in Pineal Expression of >600 Genes
Michael J. Bailey, Steven L. Coon, David Carter, Ann Humphries, Jong‐So Kim, Qiong Shi, Pascaline Gaildrat, Fabrice Morin, Surajit Ganguly, John B. Hogenesch et al. · 2008 · Journal of Biological Chemistry
Salicylic acid is an indispensable component of the Ny-1 resistance-gene-mediated response against Potato virus Y infection in potato
Špela Baebler, Kamil Witek, Marko Petek, Katja Stare, M. Tušek‐Žnidarič, Maruša Pompe‐Novak, Jenny Renaut, Katarzyna Szajko, Danuta Strzelczyk‐Żyta, Waldemar Marczewski et al. · 2014 · Journal of Experimental Botany
Differential Regulation of the Let-7 Family of MicroRNAs in CD4+ T Cells Alters IL-10 Expression
Sanjay Swaminathan, Kazuo Suzuki, Nabila Seddiki, Warren H. Kaplan, Mark J. Cowley, Chantelle L. Hood, Jennifer L Clancy, Daniel D. Murray, Catalina Méndez, Linda Gelgor et al. · 2012 · The Journal of Immunology
Systematic identification of mutations and copy number alterations associated with cancer patient prognosis
Joan C. Smith, Jason M. Sheltzer · 2018 · eLife
Gene Expression Pattern of Cells From Inflamed and Normal Areas of Osteoarthritis Synovial Membrane
Cécile Lambert, Jean‐Emile Dubuc, E. Montell, Josep Vergés, Carine Munaut, Agnès Noël, Yves Edgard Henrotin · 2013 · Arthritis & Rheumatology
Integrated genetic and epigenetic analysis of childhood acute lymphoblastic leukemia
María E. Figueroa, Shann-Ching Chen, Anna Andersson, Letha A. Phillips, Yushan Li, Jason R. Sotzen, Mondira Kundu, James R. Downing, Ari M. Melnick, Charles Grenfell Mullighan · 2013 · Journal of Clinical Investigation
TDP2 protects transcription from abortive topoisomerase activity and is required for normal neural function
Fernando Gómez-Herreros, Janneke H. M. Schuurs-Hoeijmakers, Mark McCormack, Marie T. Greally, Stuart L. Rulten, Rocío Romero‐Granados, Timothy J. Counihan, Elijah C. Chaila, Judith Conroy, Sean Ennis et al. · 2014 · Nature Genetics
UV-B Perception and Acclimation in Chlamydomonas reinhardtii
Kimberley Tilbrook, Marine Dubois, Carlos Daniel Crocco, Ruohe Yin, Richard Chappuis, Guillaume Allorent, Emanuel Schmid‐Siegert, Michel Goldschmidt‐Clermont, Roman Ulm · 2016 · The Plant Cell
Inferring Interaction Networks From Multi-Omics Data
Johann S. Hawe, Fabian Joachim Theis, Matthias Heinig · 2019 · Frontiers in Genetics
Reconstructed Single-Cell Fate Trajectories Define Lineage Plasticity Windows during Differentiation of Human PSC-Derived Distal Lung Progenitors
Killian Hurley, Jun Ding, Carlos Villacorta-Martín, Michael J. Herriges, Anjali Jacob, Marall Vedaie, Konstantinos–Dionysios Alysandratos, Yuliang L. Sun, Chieh Hubert Lin, Rhiannon B. Werder et al. · 2020 · Cell stem cell
Hepatocyte-specific deletion of Pparα promotes NAFLD in the context of obesity
Marion Régnier, Arnaud Polizzi, Sarra Smati, Céline Lukowicz, Anne Fougerat, Yannick Lippi, Edwin Fouché, Frédéric Lasserre, Claire Naylies, Colette Bétoulières et al. · 2020 · Scientific Reports
EphA2 Expression Is a Key Driver of Migration and Invasion and a Poor Prognostic Marker in Colorectal Cancer
Philip D. Dunne, Sonali Dasgupta, Jaine K. Blayney, Darragh G. McArt, Keara L. Redmond, Jessica-Anne Weir, Conor A. Bradley, Takehiko Sasazuki, Senji Shirasawa, Tingting Wang et al. · 2015 · Clinical Cancer Research
Genome-wide identification of transcriptional start sites in the haloarchaeon Haloferax volcanii based on differential RNA-Seq (dRNA-Seq)
Julia Babski, Karina A. Haas, Daniela NĂ¤Ther-Schindler, Friedhelm Pfeiffer, Konrad U. Förstner, Matthias Hammelmann, Rolf Hilker, Anke Becker, Cynthia Mira Sharma, Anita Marchfelder et al. · 2016 · BMC Genomics
EMPOWERING MULTI-COHORT GENE EXPRESSION ANALYSIS TO INCREASE REPRODUCIBILITY
Winston A. Haynes, Francesco Vallania, Charles Yu Liu, Erika Bongen, Aurelie Tomczak, Marta Andres-Terrè, Shane Lofgren, Andrew Tam, Cole A. Deisseroth, Matthew Li et al. · 2016 · Pacific Symposium on Biocomputing (PSB)
Specific Endothelial Cells Govern Nanoparticle Entry into Solid Tumors
Benjamin R. Kingston, Zachary Pengju Lin, Ben Ouyang, Presley MacMillan, Jessica Ngai, Abdullah M. Syed, Shrey Sindhwani, Warren C. W. Chan · 2021 · ACS Nano
Fibroblast-Derived Dermal Matrix Drives Development of Aggressive Cutaneous Squamous Cell Carcinoma in Patients with Recessive Dystrophic Epidermolysis Bullosa
Yi-Zhen Ng, Céline Pourreyron, Julio Cesar Salas-Alanis, Jasbani H.S. Dayal, Rodrigo Cepeda‐Valdes, Wenfei Yan, Sheila C. Wright, Mei Chen, Jo‐David Fine, Fiona J. Hogg et al. · 2012 · Cancer Research
Physiology of Pseudomonas aeruginosa in biofilms as revealed by transcriptome analysis
James Patrick Folsom, Lee Richards, Betsey Pitts, Frank Roe, Garth D. Ehrlich, Albert E. Parker, Aurélien Mazurie, Philip S. Stewart · 2010 · BMC Microbiology
Therapeutic potential of targeting microRNA‐10b in established intracranial glioblastoma: first steps toward the clinic
N. Teplyuk, Erik J. Uhlmann, G. Gabriely, N. Volfovsky, Yang Wang, J. Teng, P. Karmali, E. Marcusson, Merlene Peter, Athul Mohan et al. · 2016 · EMBO Molecular Medicine
A penicillin-binding protein inhibits selection of colistin-resistant, lipooligosaccharide-deficient Acinetobacter baumannii
Joseph M. Boll, Alexander A. Crofts, Katharina Peters, Vincent Cattoir, Waldemar Vollmer, Bryan W. Davies, M. Stephen Trent · 2016 · Proceedings of the National Academy of Sciences
Intermittent glucocorticoid steroid dosing enhances muscle repair without eliciting muscle atrophy
Mattia Quattrocelli, David Y. Barefield, James L. Warner, Andy H. Vo, Michele Hadhazy, Judy U. Earley, Alexis R. Demonbreun, Elizabeth M. McNally · 2017 · Journal of Clinical Investigation
Mammalian oocytes store proteins for the early embryo on cytoplasmic lattices
Ida Marie Astad Jentoft, Felix J.B. Bäuerlein, Luisa M. Welp, Benjamin H. Cooper, Arsen Petrović, Chun So, Sarah Mae U. Penir, Antonio Zaccaria Politi, Yehor Horokhovskyi, Iina Takala et al. · 2023 · Cell
Evolutionary Origin and Maintenance of Coexpressed Gene Clusters in Mammals
Marie Sémon, Laurent Duret · 2006 · Molecular Biology and Evolution
Human Promoters Are Intrinsically Directional
Sascha H. Duttke, S. Lacadie, Mahmoud M. Ibrahim, C. Glass, D. Corcoran, C. Benner, S. Heinz, J. T. Kadonaga, U. Ohler · 2015 · Molecules and Cells
Virulence Regulator EspR of Mycobacterium tuberculosis Is a Nucleoid-Associated Protein
Benjamin Blasco, Jeffrey M. Chen, Ruben Christiaan Hartkoorn, Claudia Sala, Swapna M. Uplekar, Jacques Rougemont, Florence Pojer, Stewart Thomas Cole · 2012 · PLoS Pathogens
Insight into the primary mode of action of TiO 2 nanoparticles on Escherichia coli in the dark
Bénédicte Sohm, Françoise Immel, Pascale Bauda, Christophe Pagnout · 2014 · PROTEOMICS
In silico Pathway Activation Network Decomposition Analysis (iPANDA) as a method for biomarker development
Ivan V. Ozerov, Ksenia V. Lezhnina, Evgeny Izumchenko, Artem V. Artemov, Sergey Medintsev, Quentin Vanhaelen, Alexander M. Aliper, Jan Vijg, Andreyan Nikolaevich Osipov, Ivan Labat et al. · 2016 · Nature Communications
Autocrine WNT2 signaling in fibroblasts promotes colorectal cancer progression
Nina Kramer, Johannes Schmoellerl, Christine Unger, Harini Nivarthi, Albin Rudisch, Daniela Unterleuthner, Martin Scherzer, Angelika Riedl, Matthias Artaker, Ilija Crnčec et al. · 2017 · Oncogene
Epigenetic regulation of gene expression in cancer: techniques, resources and analysis
Luciane Tsukamoto Kagohara, Genevieve Stein-O’Brien, Dylan Z. Kelley, Emily L. Flam, Heather C. Wick, Ludmila Danilova, Hariharan Easwaran, Alexander V. Favorov, Jiang X. Qian, Daria A. Gaykalova et al. · 2017 · Briefings in Functional Genomics
An Insulin-Sensitive Circular RNA that Regulates Lifespan in Drosophila
Carina Marianne Weigelt, Rohan Sehgal, Luke Stephen Tain, Jun Cheng, Jacqueline Eßer, André Pahl, Christoph Dieterich, Sebastian Grönke, Linda Partridge · 2020 · Molecular Cell
Quinone perception in plants via leucine-rich-repeat receptor-like kinases
Anuphon Laohavisit, Takanori Wakatake, Nobuaki Ishihama, Hugh Mulvey, Kaori Takizawa, Takamasa Suzuki, Ken Shirasu · 2020 · Nature
Arabidopsis thaliana RALF1 opposes brassinosteroid effects on root cell elongation and lateral root formation
Tábata Bergonci, Bianca Ribeiro, Paulo H. O. Ceciliato, Juan Carlos Guerrero‐Abad, Márcio C. Silva-Filho, Daniel Scherer de Moura · 2014 · Journal of Experimental Botany
DNA hypermethylation associated with upregulated gene expression in prostate cancer demonstrates the diversity of epigenetic regulation
Ieva Rauluševičiūtė, Finn Drabløs, Morten Beck Rye · 2020 · BMC Medical Genomics
METTL3 preferentially enhances non-m6A translation of epigenetic factors and promotes tumourigenesis
Xueju Wei, Yue Huo, Jingnan Pi, Yufeng Gao, Shuan Rao, Manman He, Qinglv Wei, Peng Song, Yiying Chen, Dongxu Lu et al. · 2022 · Nature Cell Biology
Arabidopsis Copper Transport Protein COPT2 Participates in the Cross Talk between Iron Deficiency Responses and Low-Phosphate Signaling
Ana Perea‐García, Antoni Garcia‐Molina, Nuria Andrés‐Colás, Francisco Vera‐Sirera, Miguel Angel Perez-Amador, Sergi Puig, Lola Peñarrubia · 2013 · PLANT PHYSIOLOGY
Atlas of RNA sequencing profiles for normal human tissues
Maria Suntsova, Нуршат Гайфуллин, Daria O. Allina, Alexey Reshetun, Xinmin Li, Larisa Pavlovna Mendeleeva, В. Л. Сурин, Anna Sergeeva, Pavel Spirin, Vladimir Prassolov et al. · 2019 · Scientific Data
Glycogen Synthase Kinase 3β-Mediated Serine Phosphorylation of the Human Glucocorticoid Receptor Redirects Gene Expression Profiles
Galliher-Beckley, Amy Jo, Williams, Jason Grant, Collins, Jennifer Brady, Cidlowski, John Anthony · 2008 · Molecular and Cellular Biology
Omics Technologies, Data and Bioinformatics Principles
Maria Victoria Schneider, Sandra E. Orchard · 2011 · Methods in molecular biology
Tbx20 regulates a genetic program essential to adult mouse cardiomyocyte function
Tao Shen, Ivy Aneas, Noboru J. Sakabe, Ralf J. Dirschinger, Gang Wang, Scott Smemo, John M. Westlund, Hongqiang Cheng, Nancy Dalton, Yusu Gu et al. · 2011 · Journal of Clinical Investigation
Transcriptomics of Desiccation Tolerance in the Streptophyte Green Alga Klebsormidium Reveal a Land Plant-Like Defense Reaction
Andreas Holzinger, Franziska Kaplan, Kathrin Blaas, Bernd Zechmann, Karin Komsic-Buchmann, Burkhard Becker · 2014 · PLoS ONE
Loss-of-function mutations within the IL-2 inducible kinase ITK in patients with EBV-associated lymphoproliferative diseases
René Martin Linka, Sarah L. Risse, Kirsten Bienemann, Martin Werner, Yvonne Linka, Frank Krux, Cindy Synaeve, René Deenen, Sebastian Ginzel, Radovan Dvorský et al. · 2012 · Leukemia
Zebrafish globin switching occurs in two developmental stages and is controlled by the LCR
Jared J. Ganis, Nelson Hsia, Eirini Trompouki, Jill L. O. de Jong, Anthony DiBiase, Janelle S. Lambert, Zhiying Jia, Peter J. Sabo, Molly Weaver, Richard S. Sandstrom et al. · 2012 · Developmental Biology
CRISPR RNA-Dependent Binding and Cleavage of Endogenous RNAs by the Campylobacter jejuni Cas9
Gaurav Dugar, Ryan T. Leenay, Sara K. Eisenbart, Thorsten Bischler, Belinda U. Aul, Chase L. Beisel, Cynthia Mira Sharma · 2018 · Molecular Cell
Microhomologies are prevalent at Cas9-induced larger deletions
Owens, Dominic D G, Caulder, Adam, Frontera, Vincent, Harman, Joe R, Allan, Alasdair J, Bucakci, Akin, Greder, Lucas, Codner, Gemma F, Hublitz, Philip, McHugh, Peter J et al. · 2019 · Nucleic Acids Research
Elevating acetyl-CoA levels reduces aspects of brain aging
Antonio Jose Martins Currais, Ling Huang, Joshua Goldberg, Michael Petrascheck, Gamze Ates, António Pinto‐Duarte, Maxim Nikolaievich Shokhirev, David A. Schubert, Pamela A Maher · 2019 · eLife
Microarray analysis reveals pivotal divergent mRNA expression profiles early in the development of either compensated ventricular hypertrophy or heart failure
Henk P.J. Buermans, Everaldo M. Redout, Anja E. Schiel, René J.P. Musters, Marian J. Zuidwijk, Paul P. Eijk, Cornelis van Hardeveld, Soemini Kasanmoentalib, Frans C. Visser, Bauke Ylstra et al. · 2005 · Physiological Genomics
MicroRNA-132 Is Enriched in Developing Axons, Locally Regulates Rasa1 mRNA, and Promotes Axon Extension
Melissa Hancock, Nicolas Preitner, Jie Quan, John G. Flanagan · 2013 · Journal of Neuroscience
Peri‐Implantitis versus Periodontitis: Functional Differences Indicated by Transcriptome Profiling
Stephan Thomas Becker, Benedicta Elisabeth Beck-Broichsitter, Christian Graetz, Christof Edmund Dörfer, Jörg Wiltfang, Robert Häsler · 2012 · Clinical Implant Dentistry and Related Research
Machine learning predictions of MHC-II specificities reveal alternative binding mode of class II epitopes
Julien Racle, Philippe Guillaume, Julien Schmidt, Justine Michaux, Amédé Larabi, Kelvin Lau, Marta A. S. Perez, Giancarlo Croce, Raphaël Genolet, George Coukos et al. · 2023 · Immunity
The Haploinsufficient Tumor Suppressor p18 Upregulates p53 via Interactions with ATM/ATR
Bum-Joon Park, Jin Wook Kang, Sang‐Won Lee, So‐Jung Choi, Young Kee Shin, Young Ha Ahn, Yun Hee Choi, Dongho Choi, Kwang Soo Lee, Sung‐Hoon Kim · 2005 · Cell
NLRP10 is a NOD-like receptor essential to initiate adaptive immunity by dendritic cells
Stephanie C. Eisenbarth, Adam Williams, Oscar R. Colegio, Hailong Meng, Till Strowig, Anthony Rongvaux, Jorge Henao‐Mejia, Christoph A. Thaiss, Sophie Joly, David G. Gonzalez et al. · 2012 · Nature
Sexual Dimorphism in Mammalian Autosomal Gene Regulation Is Determined Not Only by Sry but by Sex Chromosome Complement As Well
Patrick J. Wijchers, Cihangir Yandım, Eleni Panousopoulou, Mushfika Ahmad, Nicky Harker, Alexander Saveliev, Paul S. Burgoyne, Richard Festenstein · 2010 · Developmental Cell
Cdc7-Dbf4 Kinase Overexpression in Multiple Cancers and Tumor Cell Lines Is Correlated with p53 Inactivation
Dorine Bonte, Charlotta J. Lindvall, Hongyu Liu, Karl J. Dykema, Kyle Furge, Michael Weinreich · 2008 · Neoplasia
Characterizing and predicting carcinogenicity and mode of action using conventional and toxicogenomics methods
Michael D. Waters, Marcus A Jackson, Isabel A. Lea · 2010 · Mutation Research/Reviews in Mutation Research
Iterative rank-order normalization of gene expression microarray data
Eric A. Welsh, Steven A. Eschrich, Anders Berglund, David A. Fenstermacher · 2013 · BMC Bioinformatics
Silver Nanowire Exposure Results in Internalization and Toxicity to Daphnia magna
Leona D. Scanlan, Robert B. Reed, Alexandre V. Loguinov, Philipp Antczak, Abderrahmane Tagmount, Shaul Aloni, Daniel Thomas Nowinski, Pauline Luong, Christine Tran, N. L. V. V. Karunaratne et al. · 2013 · ACS Nano
Clonal evolution underlying leukemia progression and Richter transformation in patients with ibrutinib-relapsed CLL
Kadri, Sabah, Lee, Jimmy, Fitzpatrick, Carrie, Galanina, Natalie, Sukhanova, Madina, Venkataraman, Girish, Sharma, Shruti, Long, Brad, Petras, Kristin, Theissen, Megan et al. · 2017 · Blood Advances
Identification of grade and origin specific cell populations in serous epithelial ovarian cancer by single cell RNA-seq
Andrew Shih, Andrew W Menzin, Jill Suzanne Whyte, John L. Lovecchio, Anthony Liew, Houman Khalili, Tawfiqul Alam Bhuiya, Peter K. Gregersen, Annette T. Lee · 2018 · PLoS ONE
Estrogen Receptor α and β Heterodimers Exert Unique Effects on Estrogen- and Tamoxifen-Dependent Gene Expression in Human U2OS Osteosarcoma Cells
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