Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

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Items 101–200 of 1,110

1. Immune and stromal classification of colorectal cancer is associated with molecular subtypes and relevant for precision immunotherapy
   Becht, Etienne, de Reyniès, Aurélien, Giraldo, Nicolas A., Pilati, Camilla, Buttard, Bénédicte, Lacroix, Laetitia, Selves, Janick, Sautès-Fridman, Catherine, Laurent-Puig, Pierre, Fridman, Wolf Herman · 2016 · Clinical Cancer Research
2. Gene expression profiling of the tumor microenvironment during breast cancer progression
   Xiaojun Ma, Sonika M Dahiya, Elizabeth Richardson, Mark G. Erlander, Dennis C. Sgroi · 2009 · Breast Cancer Research
3. Large-scale foundation model on single-cell transcriptomics
   Hao, Minsheng, Gong, Jing, Zeng, Xin, Liu, Chiming, Guo, Yucheng, Cheng, Xingyi, Wang, Taifeng, Ma, Jianzhu, Zhang, Xuegong, Song, Le · 2024 · Nature Methods
4. CTCF and cohesin regulate chromatin loop stability with distinct dynamics
   Hansen, Anders S, Pustova, Iryna, Cattoglio, Claudia, Tjian, Robert, Darzacq, Xavier · 2017 · eLife
5. Mapping complex disease loci in whole-genome association studies
   Christopher S. Carlson, Michael A. Eberle, Leonid Kruglyak, Deborah A. Nickerson · 2004 · Nature
6. Revisiting Global Gene Expression Analysis
   Lovén, Jakob, Orlando, David A., Sigova, Alla A., Lin, Charles Y., Rahl, Peter B., Burge, Christopher B., Levens, David L., Lee, Tong Ihn, Young, Richard A. · 2012 · Cell
7. DUX-family transcription factors regulate zygotic genome activation in placental mammals
   Alberto De Iaco, Evarist Planet, Andrea Coluccio, Sonia Verp, Julien Duc, Didier Trono · 2017 · Nature Genetics
8. DZNep is a global histone methylation inhibitor that reactivates developmental genes not silenced by DNA methylation
   Tina Branscombe Miranda, Connie C. Cortez, Christine B. Yoo, Gangning Liang, Masanobu Abe, Theresa Kathleen Kelly, Víctor E. Márquez, Peter A. Jones · 2009 · Molecular Cancer Therapeutics
9. Missing data and technical variability in single-cell RNA-sequencing experiments
   Hicks, Stephanie C, Townes, F William, Teng, Mingxiang, Irizarry, Rafael A · 2018 · Biostatistics
10. Joint probabilistic modeling of single-cell multi-omic data with totalVI
    Gayoso, Adam, Steier, Zoë, Lopez, Romain, Regier, Jeffrey, Nazor, Kristopher L., Streets, Aaron, Yosef, Nir · 2021 · Nature Methods
11. Frozen robust multiarray analysis (fRMA)
    Martin N. McCall, Benjamin Milo Bolstad, Rafael A. Irizarry · 2010 · Biostatistics
12. Long noncoding RNA GAS5 inhibits progression of colorectal cancer by interacting with and triggering YAP phosphorylation and degradation and is negatively regulated by the m6A reader YTHDF3
    Wen Ni, Su Yao, Yunxia Zhou, Yuanyuan Liu, Piao Huang, Aijun Zhou, Jingwen Liu, Liheng Che, Jianming Li · 2019 · Molecular Cancer
13. Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse
    Shenglin Mei, Qian Qin, Qiu Wu, Hanfei Sun, Rongbin Zheng, Chongzhi Zang, Muyuan Zhu, Jiaxin Wu, Xiaohui Shi, Len Taing et al. · 2016 · Nucleic Acids Research
14. Impaired immune surveillance accelerates accumulation of senescent cells and aging
    Ovadya, Yossi, Landsberger, Tomer, Leins, Hanna, Vadai, Ezra, Gal, Hilah, Biran, Anat, Yosef, Reut, Sagiv, Adi, Agrawal, Amit, Shapira, Alon et al. · 2018 · Nature Communications
15. IL4I1 Is a Metabolic Immune Checkpoint that Activates the AHR and Promotes Tumor Progression
    Ahmed Sadik, Luis F. Somarribas Patterson, Selcen Öztürk, Soumya R. Mohapatra, Verena Panitz, Philipp F. Secker, Pauline Pfänder, Stefanie Loth, Heba Salem, Mirja Tamara Prentzell et al. · 2020 · Cell
16. Proteomic Profiling Identifies Dysregulated Pathways in Small Cell Lung Cancer and Novel Therapeutic Targets Including PARP1
    Lauren A. Byers, Jing Wang, Monique B. Nilsson, Junya Fujimoto, Pierre Saintigny, John S. Yordy, Uma P. Giri, Michael Peyton, You Hong Fan, Lixia Diao et al. · 2012 · Cancer Discovery
17. Large-scale prediction of long non-coding RNA functions in a coding–non-coding gene co-expression network
    Qi Liao, Changning Liu, Xiongying Yuan, Shuli Kang, Ruoyu Miao, Hui Xiao, Guoguang Zhao, Haitao Luo, Dechao Bu, Haitao Zhao et al. · 2011 · Nucleic Acids Research
18. EPIC: A Tool to Estimate the Proportions of Different Cell Types from Bulk Gene Expression Data
    Julien Racle, David Gfeller · 2020 · Methods in molecular biology
19. Repeatability of published microarray gene expression analyses
    Ioannidis, John P A, Allison, David B, Ball, Catherine A, Coulibaly, Issa, Cui, Xiangqin, Culhane, Aedín C, Falchi, Mario, Furlanello, Cesare, Game, Laurence, Jurman, Giuseppe et al. · 2009 · Nature Genetics
20. Removing Batch Effects in Analysis of Expression Microarray Data: An Evaluation of Six Batch Adjustment Methods
    Chao Chen, Kay S. Grennan, Judith Ann Badner, Dandan Zhang, Elliot S. Gershon, Jin Li, Chunyu Liu · 2011 · PLoS ONE
21. Paucity of Genes on the Drosophila X Chromosome Showing Male-Biased Expression
    Michael J Parisi, Rachel Nuttall, Daniel Q. Naiman, Gerard G. Bouffard, James D. Malley, Justen Andrews, Scott Eastman, Brian Oliver · 2003 · Science
22. Transcriptional control of preadipocyte determination by Zfp423
    Rana K. Gupta, Zoltan Pierre Arany, Patrick Seale, Rina J. Mepani, Ye Li, Heather M. Conroe, Yang A. Roby, Heather M. Kulaga, Randall R. Reed, Bruce M. Spiegelman · 2010 · Nature
23. A Novel Mechanism of Host-Pathogen Interaction through sRNA in Bacterial Outer Membrane Vesicles
    Katja Koeppen, Thomas H. Hampton, Michael Jarek, Maren Scharfe, Scott A. Gerber, Daniel W. Mielcarz, Elora G. Demers, Emily L. Dolben, John H. Hammond, Deborah A. Hogan et al. · 2016 · PLoS Pathogens
24. Key Issues in Conducting a Meta-Analysis of Gene Expression Microarray Datasets
    Adaikalavan Ramasamy, Adrian Mondry, Chris C. Holmes, Douglas G. Altman · 2008 · PLoS Medicine
25. Genome-Wide Profiling and Analysis of Arabidopsis siRNAs
    Kristin D. Kasschau, Noah Fahlgren, Elisabeth J. Chapman, Christopher M. Sullivan, Jason S. Cumbie, Scott A. Givan, James C. Carrington · 2007 · PLoS Biology
26. Rank–rank hypergeometric overlap: identification of statistically significant overlap between gene-expression signatures
    Plaisier, Seema B., Taschereau, Richard, Wong, Justin A., Graeber, Thomas G. · 2010 · Nucleic Acids Research
27. Development of a cross-platform biomarker signature to detect renal transplant tolerance in humans
    Pervinder Sagoo, Esperanza Perucha, Birgit Sawitzki, Stefan Tomiuk, David A. Stephens, Patrick Miqueu, Stephanie J. Chapman, Ligia Craciun, Ruhena Sergeant, Sophie Brouard et al. · 2010 · Journal of Clinical Investigation
28. Clinical update on head and neck cancer: molecular biology and ongoing challenges
    Elham Alsahafi, Katheryn Begg, Ivano Amelio, Nina Raulf, Philippe Lucarelli, Thomas Sauter, Mahvash Tavassoli · 2019 · Cell Death and Disease
29. NCBI GEO: archive for gene expression and epigenomics data sets: 23-year update
    Emily Clough, Tanya Barrett, Stephen E. Wilhite, Pierre Ledoux, Carlos C. Evangelista, Irene F. Kim, Maxim Tomashevsky, Kimberly A. Marshall, Katherine Phillippy, Patti M. Sherman et al. · 2023 · Nucleic Acids Research
30. Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature
    Yael Haberman, Timothy L. Tickle, Phillip J. Dexheimer, Mi‐Ok Kim, Dora Tang, Rebekah A. Karns, Robert N. Baldassano, Joshua D. Noe, Joel R. Rosh, James F. Markowitz et al. · 2014 · Journal of Clinical Investigation
31. DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly
    Ilari Scheinin, Daoud Sie, Henrik L. Bengtsson, Mark A. van de Wiel, Adam B. Olshen, Hinke F. van Thuijl, Hendrik F HFvE Van Essen, Paul P. Eijk, François Rustenburg, Gerrit A. Meijer et al. · 2014 · Genome Research
32. CXCL10 Is Critical for the Progression and Maintenance of Depigmentation in a Mouse Model of Vitiligo
    Mehdi Rashighi, Priti Agarwal, Jillian M. Richmond, Tajie H. Harris, Karen Dresser, Mingwan Su, Youwen Zhou, APRIL C. DENG, Christopher A. Hunter, Andrew David Luster et al. · 2014 · Science Translational Medicine
33. Mapping DNA methylation across development, genotype and schizophrenia in the human frontal cortex
    Jaffe, Andrew E, Gao, Yuan, Deep-Soboslay, Amy, Tao, Ran, Hyde, Thomas M, Weinberger, Daniel R, Kleinman, Joel E · 2016 · Nature Neuroscience
34. [19] Gene Expression Omnibus: Microarray Data Storage, Submission, Retrieval, and Analysis
    Tanya Barrett, Ron Edgar · 2006 · Methods in enzymology on CD-ROM/Methods in enzymology
35. Distinct Argonaute-Mediated 22G-RNA Pathways Direct Genome Surveillance in the C. elegans Germline
    Weifeng Gu, Masaki Shirayama, Darryl Conte, Jessica J. Vasale, Pedro J. Batista, Julie M. Claycomb, James J. Moresco, Elaine M. Youngman, Jennifer A. Keys, Matthew Stoltz et al. · 2009 · Molecular Cell
36. Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
    Lingyun Song, Zhancheng Zhang, Linda L. Grasfeder, Alan P. Boyle, Paul G. Giresi, Bum-Kyu Lee, Nathan C. Sheffield, Stefan Gräf, Mikael Huss, Damian Keefe et al. · 2011 · Genome Research
37. Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps
    Elena Nabieva, Kam Jim, Amit Agarwal, Bernard Chazelle, Mona Singh · 2005 · Bioinformatics
38. Digestive system is a potential route of COVID-19: an analysis of single-cell coexpression pattern of key proteins in viral entry process
    Zhang, Hao, Kang, Zijian, Gong, Haiyi, Xu, Da, Wang, Jing, Li, Zhixiu, Li, Zifu, Cui, Xinggang, Xiao, Jianru, Zhan, Jian et al. · 2020 · Gut
39. Network pharmacology applications to map the unexplored target space and therapeutic potential of natural products
    Milla Kibble, Niina Saarinen, Jing Ping Tang, Krister Wennerberg, Sari Mäkelä, Tero A. Aittokallio · 2015 · Natural Product Reports
40. The functional landscape of the human phosphoproteome
    Ochoa, David, Jarnuczak, Andrew F., Viéitez, Cristina, Gehre, Maja, Soucheray, Margaret, Mateus, André, Kleefeldt, Askar A., Hill, Anthony, Garcia-Alonso, Luz, Stein, Frank et al. · 2020 · Nature Biotechnology
41. Genome-wide meta-analyses of multiancestry cohorts identify multiple new susceptibility loci for refractive error and myopia
    Consortium for Refractive Error and Myopia (CREAM), Verhoeven, Virginie J M, The Diabetes Control and Complications Trial/Epidemiology of Diabetes Interventions and Complications (DCCT/EDIC) Research Group, Wellcome Trust Case Control Consortium 2 (WTCCC2), The Fuchs' Genetics Multi-Center Study Group, Hysi, Pirro G, Wojciechowski, Robert, Fan, Qiao, Guggenheim, Jeremy A, Höhn, René et al. · 2013 · Nature Genetics
42. Decoding the regulatory landscape of melanoma reveals TEADS as regulators of the invasive cell state
    Verfaillie, Annelien, Imrichova, Hana, Atak, Zeynep Kalender, Dewaele, Michael, Rambow, Florian, Hulselmans, Gert, Christiaens, Valerie, Svetlichnyy, Dmitry, Luciani, Flavie, Van den Mooter, Laura et al. · 2015 · Nature Communications
43. Divergence of human and mouse brain transcriptome highlights Alzheimer disease pathways
    Miller, Jeremy A., Horvath, Steve, Geschwind, Daniel H. · 2010 · Proceedings of the National Academy of Sciences
44. Co‐expression tools for plant biology: opportunities for hypothesis generation and caveats
    Björn Usadel, Takeshi Obayashi, Marek Mutwil, Federico Manuel Giorgi, George W. Bassel, Mimi Tanimoto, AMANDA CHOW, Dirk Steinhauser, Staffan Persson, Nicholas James Provart · 2009 · Plant Cell & Environment
45. pathfindR: An R Package for Comprehensive Identification of Enriched Pathways in Omics Data Through Active Subnetworks
    Ege Ülgen, Ozan Özışık, Osman Uğur Sezerman · 2019 · Frontiers in Genetics
46. Indole is an inter-species biofilm signal mediated by SdiA
    Jintae Lee, Arul Jayaraman, Thomas Keith Wood · 2007 · BMC Microbiology
47. Transcriptome Analyses Show Changes in Gene Expression to Accompany Pollen Germination and Tube Growth in Arabidopsis
    Yi Wang, Wenzheng Zhang, Lian-Fen Song, Junjie Zou, Zhen Su, Weihua Wu · 2008 · PLANT PHYSIOLOGY
48. Comparing genomic expression patterns across species identifies shared transcriptional profile in aging
    McCarroll, Steven A, Murphy, Coleen T, Zou, Sige, Pletcher, Scott D, Chin, Chen-Shan, Jan, Yuh Nung, Kenyon, Cynthia, Bargmann, Cornelia I, Li, Hao · 2004 · Nature Genetics
49. BioArray Software Environment (BASE): a platform for comprehensive management and analysis of microarray data
    Lao H. Saal, Carl Troein, Johan Vallon‐Christersson, Sofia K. Gruvberger-Saal, Åke Borg, Carsten Peterson · 2002 · Genome biology
50. The Drosophila HP1 Homolog Rhino Is Required for Transposon Silencing and piRNA Production by Dual-Strand Clusters
    Carla Klattenhoff, Hualin Simon Xi, Chengjian Li, Soohyun Lee, Jia L. Xu, Jaspreet S. Khurana, Fan Zhang, Nadine Schultz, Birgit S. Koppetsch, Anetta Nowosielska et al. · 2009 · Cell
51. Heterogeneous Tumor-Immune Microenvironments among Differentially Growing Metastases in an Ovarian Cancer Patient
    Alejandro Jiménez-Sánchez, Danish Memon, Stephane Pourpe, Harini Veeraraghavan, Yanyun Li, Hebert Alberto Vargas, Michael B. Gill, Kay J. Park, Oliver Zivanovic, Jason A. Konner et al. · 2017 · Cell
52. Global analysis of genome, transcriptome and proteome reveals the response to aneuploidy in human cells
    Silvia Stingele, Gabriele Stoehr, Karolina Peplowska, Jürgen Cox, Matthias Mann, Zuzana Štorchová · 2012 · Molecular Systems Biology
53. PlantPAN3.0: a new and updated resource for reconstructing transcriptional regulatory networks from ChIP-seq experiments in plants
    Chi-Nga Chow, Tzong-Yi Lee, Yu-Cheng Hung, Guan-Zhen Li, Kuan-Chieh Tseng, Ya-Hsin Liu, Po-Li Kuo, Han-Qin Zheng, Wen‐Chi Chang · 2018 · Nucleic Acids Research
54. The Argonaute CSR-1 and Its 22G-RNA Cofactors Are Required for Holocentric Chromosome Segregation
    Julie M. Claycomb, Pedro J. Batista, Ka Ming Pang, Weifeng Gu, Jessica J. Vasale, Josien C. van Wolfswinkel, Daniel A. Chaves, Masaki Shirayama, Shohei Mitani, René F. Ketting et al. · 2009 · Cell
55. DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns
    Lokk, Kaie, Modhukur, Vijayachitra, Rajashekar, Balaji, Märtens, Kaspar, Mägi, Reedik, Kolde, Raivo, Koltšina, Marina, Nilsson, Torbjörn K, Vilo, Jaak, Salumets, Andres et al. · 2014 · Genome Biology
56. CD80 and PD-L2 define functionally distinct memory B cell subsets that are independent of antibody isotype
    Griselda Zuccarino-Catania, Saheli Sadanand, Florian J. Weisel, Mary M. Tomayko, Hailong Meng, Steven H. Kleinstein, Kim L. Good‐Jacobson, Mark Jay Shlomchik · 2014 · Nature Immunology
57. Artificial intelligence in cancer target identification and drug discovery
    Yujie You, Xin Lai, Yi Feng Pan, Huiru Zheng, Julio Vera, Suran Liu, Senyi Deng, Le Zhang · 2022 · Signal Transduction and Targeted Therapy
58. Consistent inverse correlation between DNA methylation of the first intron and gene expression across tissues and species
    Dafni Anastasiadi, Anna Esteve‐Codina, Francesc Piferrer · 2018 · Epigenetics & Chromatin
59. Population transcriptomics of human malaria parasites reveals the mechanism of artemisinin resistance
    Sachel Mok, Elizabeth A. Ashley, Pedro Eduardo Ferreira, Lei Zhu, Zhaoting Lin, Tomas Yeo, Kesinee Chotivanich, Mallika Imwong, Sasithon Pukrittayakamee, Mehul Dhorda et al. · 2014 · Science
60. Sensory neuron diversity in the inner ear is shaped by activity
    Shrestha, Brikha R., Chia, Chester, Wu, Lorna, Kujawa, Sharon G., Liberman, M. Charles, Goodrich, Lisa V. · 2018 · Cell
61. Gene expression inference with deep learning
    Yifei Chen, Yi Li, Rajiv Narayan, Aravind Subramanian, Xiaohui S. Xie · 2016 · Bioinformatics
62. Polycomb-dependent regulatory contacts between distant Hox loci in Drosophila
    Bantignies, Frédéric, Roure, Virginie, Comet, Itys, Leblanc, Benjamin, Schuettengruber, Bernd, Bonnet, Jérôme, Tixier, Vanessa, Mas, André, Cavalli, Giacomo · 2011 · Cell
63. SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data
    Maximilian Diehn · 2003 · Nucleic Acids Research
64. Sequencing error profiles of Illumina sequencing instruments
    Nicholas Stoler, Anton Nekrutenko · 2021 · NAR Genomics and Bioinformatics
65. RiceXPro Version 3.0: expanding the informatics resource for rice transcriptome
    Yutaka Sato, Hinako Takehisa, Kaori Kamatsuki, Hiroshi Minami, Nobukazu Namiki, Hiroshi Ikawa, Hajime Ohyanagi, Kazuhiko Sugimoto, Baltazar A. Antonio, Yoshiaki Nagamura · 2012 · Nucleic Acids Research
66. Computational tools for prioritizing candidate genes: boosting disease gene discovery
    Moreau, Yves, Tranchevent, Léon-Charles · 2012 · Nature Reviews Genetics
67. Oncogene-like induction of cellular invasion from centrosome amplification
    Susana A. Godinho, Remigio Picone, Mithila Burute, Regina Dagher, Ying Su, Cheuk T. Leung, Kornélia Polyák, Joan S. Brugge, Manuel Théry, David S. Pellman · 2014 · Nature
68. Cigarette Smoke Exposure and Inflammatory Signaling Increase the Expression of the SARS-CoV-2 Receptor ACE2 in the Respiratory Tract
    Joan C. Smith, Erin L. Sausville, Vishruth Girish, Monet Lou Yuan, Anand Vasudevan, Kristen M. John, Jason M. Sheltzer · 2020 · Developmental Cell
69. Toxicogenomics and systems toxicology: aims and prospects
    Michael D. Waters, Jennifer M. Fostel · 2004 · Nature Reviews Genetics
70. Data integration in the era of omics: current and future challenges
    David Gómez-Cabrero, Imad Abugessaisa, Dieter Maier, Andrew Erich Teschendorff, Matthias Merkenschlager, Andreas Gisel, Esteban Ballestar, Erik Bongcam‐Rudloff, Ana Conesa, Jesper N. Tegner · 2014 · BMC Systems Biology
71. Global regulation of erythroid gene expression by transcription factor GATA-1
    J. J. Welch · 2004 · Blood
72. GeneMANIA Prediction Server 2013 Update
    Zuberi, Khalid, Franz, Max, Rodriguez, Harold, Montojo, Jason, Lopes, Christian Tannus, Bader, Gary D., Morris, Quaid · 2013 · Nucleic Acids Research
73. bc-GenExMiner: an easy-to-use online platform for gene prognostic analyses in breast cancer
    Pascal Jézéquel, Mario Campone, Wilfried Gouraud, Catherine Guérin‐Charbonnel, Christophe Leux, Gabriel Ricolleau, L. Campion · 2011 · Breast Cancer Research and Treatment
74. Clinical Decision Support Systems for Improving Diagnostic Accuracy and Achieving Precision Medicine
    Castaneda, Christian, Nalley, Kip, Mannion, Ciaran, Bhattacharyya, Pritish, Blake, Patrick, Pecora, Andrew, Goy, Andre, Suh, K Stephen · 2015 · Journal of Clinical Bioinformatics
75. Transcriptional neoteny in the human brain
    Mehmet Somel, Henriette Franz, Yan Zheng, Anna Lorenc, Song Guo, Thomas Giger, Janet F. Kelso, Birgit Nickel, Michael Dannemann, Sabine Bahn et al. · 2009 · Proceedings of the National Academy of Sciences
76. Nuclear FAK Controls Chemokine Transcription, Tregs, and Evasion of Anti-tumor Immunity
    Serrels, Alan, Lund, Tom, Serrels, Bryan, Byron, Adam, McPherson, Rhoanne C., von Kriegsheim, Alexander, Gómez-Cuadrado, Laura, Canel, Marta, Muir, Morwenna, Ring, Jennifer E. et al. · 2015 · Cell
77. A reference genome for Nicotiana tabacum enables map-based cloning of homeologous loci implicated in nitrogen utilization efficiency
    Kieron D. Edwards, Noé Fernández‐Pozo, Katherine E. Drake-Stowe, M. Humphry, Andrew Evans, Aureliano Bombarely, F. Allen, R. Hurst, B. White, Sheri P. Kernodle et al. · 2017 · BMC Genomics
78. Probabilistic integrative modeling of genome-scale metabolic and regulatory networks in Escherichia coli and Mycobacterium tuberculosis
    Sriram Chandrasekaran, Nathan D. Price · 2010 · Proceedings of the National Academy of Sciences
79. Genome-Wide Analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 Pathway inArabidopsisReveals Dependency on miRNA- and tasiRNA-Directed Targeting
    Miya D. Howell, Noah Fahlgren, Elisabeth J. Chapman, Jason S. Cumbie, Christopher M. Sullivan, Scott A. Givan, Kristin D. Kasschau, James C. Carrington · 2007 · The Plant Cell
80. APPLICATIONS OF DNA MICROARRAYS IN BIOLOGY
    Roland B. Stoughton · 2005 · Annual Review of Biochemistry
81. Ribosome profiling reveals pervasive and regulated stop codon readthrough in Drosophila melanogaster
    Joshua G. Dunn, Catherine K. Foo, Nicolette G Belletier, Elizabeth R. Gavis, Jonathan S. Weissman · 2013 · eLife
82. Mitochondrial stress induces chromatin reorganization to promote longevity and UPR(mt)
    Tian, Ye, Garcia, Gilberto, Bian, Qian, Steffen, Kristan K., Joe, Larry, Wolff, Suzanne, Meyer, Barbara J., Dillin, Andrew · 2016 · Cell
83. NASCArrays: a repository for microarray data generated by NASC's transcriptomics service
    David J Craigon · 2003 · Nucleic Acids Research
84. Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways
    Zachary A. King, Andreas Dräger, Ali Ebrahim, Nikolaus Sonnenschein, Nathan E. Lewis, Bernhard Ørn Palsson · 2015 · PLoS Computational Biology
85. A review of computational drug repositioning: strategies, approaches, opportunities, challenges, and directions
    Jarada, Tamer N., Rokne, Jon G., Alhajj, Reda · 2020 · Journal of Cheminformatics
86. Exit from Proliferation during Leaf Development in Arabidopsis thaliana: A Not-So-Gradual Process
    Megan Andriankaja, Stijn Dhondt, Stefanie De Bodt, Hannes Vanhaeren, Frederik Coppens, Liesbeth De Milde, Per Mühlenbock, Aleksandra Skirycz, Nathalie González, Gerrit T.S. Beemster et al. · 2012 · Developmental Cell
87. Mesenchymal Stem Cell–Derived Exosomes Stimulate Cycling Quiescence and Early Breast Cancer Dormancy in Bone Marrow
    Sarah A. Bliss, Garima Sinha, Oleta A. Sandiford, Lisa M. Williams, Daniel J. Engelberth, Khadidiatou Guiro, Leidy Lismeri Isenalumhe, Steven J. Greco, Seda Ayer, Margarette Bryan et al. · 2016 · Cancer Research
88. Batch effects and the effective design of single-cell gene expression studies
    Tung, Po-Yuan, Blischak, John D., Hsiao, Chiaowen Joyce, Knowles, David A., Burnett, Jonathan E., Pritchard, Jonathan K., Gilad, Yoav · 2017 · Scientific Reports
89. Synovial phenotypes in rheumatoid arthritis correlate with response to biologic therapeutics
    Glynn Dennis, Cecile T.J. Holweg, Sarah Kummerfeld, David F. Choy, Audi Setiadi, Jason A. Hackney, Peter M. Haverty, Houston Gilbert, Wei Yu Lin, Lauri J. Diehl et al. · 2014 · Arthritis Research & Therapy
90. The Application of Deep Learning in Cancer Prognosis Prediction
    Wan Zhu, Longxiang Xie, Jianye Han, Xiangqian Guo · 2020 · Cancers
91. Hyaluronan Receptor LYVE-1-Expressing Macrophages Maintain Arterial Tone through Hyaluronan-Mediated Regulation of Smooth Muscle Cell Collagen
    Lim, Hwee Ying, Lim, Sheau Yng, Tan, Chek Kun, Thiam, Chung Hwee, Goh, Chi Ching, Carbajo, Daniel, Chew, Samantha Hui Shang, See, Peter, Chakarov, Svetoslav, Wang, Xiao Nong et al. · 2018 · Immunity
92. FlyBase: genes and gene models
    Rachel A Drysdale · 2004 · Nucleic Acids Research
93. Chromatin-Remodeling Components of the BAF Complex Facilitate Reprogramming
    Singhal, Nishant, Graumann, Johannes, Wu, Guangming, Araúzo-Bravo, Marcos J., Han, Dong Wook, Greber, Boris, Gentile, Luca, Mann, Matthias, Schöler, Hans R. · 2010 · Cell
94. Increased sporulation underpins adaptation of Clostridium difficile strain 630 to a biologically–relevant faecal environment, with implications for pathogenicity
    Nigel George Ternan, Nicola Diana Moore, Deborah Smyth, Gordon J. McDougall, James William Allwood, Susan R. Verrall, Chris I. R. Gill, James Stephen Gerard Dooley, Geoff McMullan · 2018 · Scientific Reports
95. Reuse of public genome-wide gene expression data
    Johan Rung, Alvis Brāzma · 2012 · Nature Reviews Genetics
96. The Membrane-Bound NAC Transcription Factor ANAC013 Functions in Mitochondrial Retrograde Regulation of the Oxidative Stress Response in Arabidopsis
    Inge De Clercq, Vanessa Vermeirssen, Olivier Van Aken, Klaas Vandepoele, Monika W. Murcha, Simon R. Law, Annelies Inzé, Sophia Ng, Aneta Ivanova, Debbie Rombaut et al. · 2013 · The Plant Cell
97. Deletion of KDM6A, a Histone Demethylase Interacting with MLL2, in Three Patients with Kabuki Syndrome
    Damien Lederer, Bernard Grisart, Maria Cristina Digilio, Valérie Benoît, Marianne Crespin, S. Ghariani, Isabelle Maystadt, Bruno Dallapiccola, Christine Verellen‐Dumoulin · 2011 · The American Journal of Human Genetics
98. Burden-driven feedback control of gene expression
    Francesca Ceroni, Alice Boo, Simone Furini, Thomas E. Gorochowski, Olivier Borkowski, Yaseen Ladak, Ali R. Awan, Charlie Gilbert, Guy-Bart V. Stan, Tom Ellis · 2018 · Nature Methods
99. Key role for a glutathione transferase in multiple-herbicide resistance in grass weeds
    Ian Cummins, David J. Wortley, Federico Sabbadin, Zhesi He, Christopher R. Coxon, Hannah E. Straker, Jonathan D. Sellars, Kathryn M. Knight, Lesley Edwards, David Hughes et al. · 2013 · Proceedings of the National Academy of Sciences
100. Approaches for Extracting Practical Information from Gene Co-expression Networks in Plant Biology
     Koh Aoki, Yoshiyuki Ogata, Daisuke Shibata · 2007 · Plant and Cell Physiology