Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

Edgar, R.·2002·Nucleic Acids Research

DOI 10.1093/nar/30.1.207

Cited by (1,115)

Items 601–700 of 1,115

Topologically associating domain boundaries are required for normal genome function
Sudha Rajderkar, Iros Barozzi, Yiwen Zhu, Rong Hu, Yanxiao Zhang, Bin Li, Ana Alcaina‐Caro, Yoko Fukuda-Yuzawa, Guy Kelman, Adyam Akeza et al. · 2023 · Communications Biology
p38γ Mitogen-Activated Protein Kinase Is a Key Regulator in Skeletal Muscle Metabolic Adaptation in Mice
Pogozelski, Andrew R., Geng, Tuoyu, Li, Ping, Yin, Xinhe, Lira, Vitor A., Zhang, Mei, Chi, Jen-Tsan, Yan, Zhen · 2009 · PLoS ONE
Transcription factor p63 bookmarks and regulates dynamic enhancers during epidermal differentiation
Evelyn N. Kouwenhoven, Martin Oti, Hanna Niehues, Simon J. van Heeringen, Joost Schalkwijk, Hendrik G. Stunnenberg, Hans van Bokhoven, Huiqing Zhou · 2015 · EMBO Reports
Cardiac cell modelling: Observations from the heart of the cardiac physiome project
Martin Fink, Steven Niederer, Elizabeth M. Cherry, Flavio H. Fenton, Jussi T. Koivumäki, Gunnar Seemann, Rüdiger Thul, Henggui Zhang, Frank B. Sachse, Daniel Andrew Beard et al. · 2010 · Progress in Biophysics and Molecular Biology
Single-Cell RNA Sequencing Reveals Novel Markers of Male Pituitary Stem Cells and Hormone-Producing Cell Types
Leonard Cheung, Akima S George, Stacey R McGee, Alexandre Z. Daly, Michelle Lynn Brinkmeier, Buffy Sue Ellsworth, Sally Ann Camper · 2018 · Endocrinology
Two-dimensional Transcriptome Analysis in Chemostat Cultures
Siew Leng Tai, Viktor M. Boer, Pascale A. S. Daran-Lapujade, Michael C. Walsh, Johannes H. de Winde, Jean-Marc G Daran, Jack T. Pronk · 2004 · Journal of Biological Chemistry
Recapitulating maladaptive, multiscale remodeling of failing myocardium on a chip
McCain, Megan L., Sheehy, Sean P., Grosberg, Anna, Goss, Josue A., Parker, Kevin Kit · 2013 · Proceedings of the National Academy of Sciences
Association of FABP5 Expression With Poor Survival in Triple-Negative Breast Cancer
Rong‐Zong Liu, Kathryn Graham, Darryl D. Glubrecht, Devon R. Germain, John Robert Mackey, Roseline Godbout · 2011 · American Journal Of Pathology
Gene Regulation by Cytokinin in Arabidopsis
Wolfram G. Brenner, Eswarayya Ramireddy, Alexander Heyl, Thomas Schmülling · 2012 · Frontiers in Plant Science
Carbon Monoxide-releasing Antibacterial Molecules Target Respiration and Global Transcriptional Regulators
Kelly S. Davidge, Guido Sanguinetti, Chu Hoi Yee, Alan G. Cox, Cameron W. McLeod, Claire E. Monk, Brian E. Mann, Roberto Motterlini, Robert K. Poole · 2008 · Journal of Biological Chemistry
Mining Affymetrix microarray data for long non-coding RNAs: altered expression in the nucleus accumbens of heroin abusers
Sharon K. Michelhaugh, Leonard Lipovich, Jason Blythe, Hui Jia, Gregory Kapatos, Michael J. Bannon · 2010 · Journal of Neurochemistry
Transcriptome Analysis of High-Temperature Stress in Developing Barley Caryopses: Early Stress Responses and Effects on Storage Compound Biosynthesis
Elke Mangelsen, Joachim Kilian, Klaus Harter, Christer Jansson, Dierk Wanke, Eva Sundberg · 2010 · Molecular Plant
Global mapping of transcription start sites and promoter motifs in the symbiotic α-proteobacterium Sinorhizobium meliloti1021
Jan-Philip Schlüter, Jan Reinkensmeier, Melanie J. Barnett, Claus Lang, Elizaveta Krol, Robert Giegerich, Sharon R. Long, Anke Becker · 2013 · BMC Genomics
Genome‐wide survey by ChIP‐seq reveals YY1 regulation of lincRNAs in skeletal myogenesis
Leina Lu, Kun Sun, Xiaona Chen, Yu Fen Zhao, Lijun Wang, Liang Zhou, Hao Sun, Huating Wang · 2013 · The EMBO Journal
Unexpectedly High Bacterial Diversity in Arctic Tundra Relative to Boreal Forest Soils, Revealed by Serial Analysis of Ribosomal Sequence Tags
Josh David Neufeld, William W. Mohn · 2005 · Applied and Environmental Microbiology
Distinct longevity mechanisms across and within species and their association with aging
Tyshkovskiy, Alexander, Ma, Siming, Shindyapina, Anastasia V., Tikhonov, Stanislav, Lee, Sang-Goo, Bozaykut, Perinur, Castro, José P., Seluanov, Andrei, Schork, Nicholas J., Gorbunova, Vera et al. · 2023 · Cell
Mining Microarray Data at NCBI\'s Gene Expression Omnibus (GEO) *
Tanya Barrett, Ron Edgar · 2006 · Humana Press eBooks
Germination of conidia of Aspergillus niger is accompanied by major changes in RNA profiles
Martin Richard van Leeuwen, Pauline Krijgsheld, Robert‐Jan Bleichrodt, Hilly H. Menke, H. Stam, J. Stark, Han A. B. Wösten, Jan Dijksterhuis · 2013 · Studies in Mycology
ConceptGen: a gene set enrichment and gene set relation mapping tool
Maureen A. Sartor, Vasudeva Mahavisno, Venkateshwar G. Keshamouni, James D. Cavalcoli, Zachary Wright, Alla Karnovsky, Rork D. Kuick, H. V. Jagadish, Barbara Mirel, Terry E. Weymouth et al. · 2009 · Bioinformatics
Ubiquitin accumulation in autophagy-deficient mice is dependent on the Nrf2-mediated stress response pathway: a potential role for protein aggregation in autophagic substrate selection
Brigit E. Riley, Stephen E. Kaiser, Thomas A. Shaler, Aylwin Ng, Taichi Hara, Mark S. Hipp, Kasper Lage, Ramnik J. Xavier, Kwon‐Yul Ryu, Keiko Taguchi et al. · 2010 · The Journal of Cell Biology
TRIM37 controls cancer-specific vulnerability to PLK4 inhibition
Franz Meitinger, Midori Ohta, Kian-Yong Lee, Sadanori Watanabe, Robert Lowell Davis, John V. Anzola, Ruth Kabeche, David A. Jenkins, Andrew K. Shiau, Arshad B. Desai et al. · 2020 · Nature
Selective regulation of bone cell apoptosis by translational isoforms of the glucocorticoid receptor
Lu, Nick Z., Collins, Jennifer B., Grissom, Sherry F., Cidlowski, John A. · 2007 · Molecular and Cellular Biology
Soybean Homologs of MPK4 Negatively Regulate Defense Responses and Positively Regulate Growth and Development
Jianzhong Liu, Heidi D. Horstman, Edward J. Braun, Michelle A. Graham, Chunquan Zhang, Duroy A. Navarre, Wen-Li Qiu, Yeunsook Lee, Dan S. Nettleton, John H. Hill et al. · 2011 · PLANT PHYSIOLOGY
Gene expression profiling–based dissection of MLL translocated and MLL germline acute lymphoblastic leukemia in infants
Ronald W. Stam, Pauline Schneider, J A P Spijkers-Hagelstein, Marieke Hendrika van der Linden, Dominique J. P. M. Stumpel, Renée X. de Menezes, Paola De Lorenzo, Maria Grazia Valsecchi, Rob Pieters · 2009 · Blood
Systems biology approaches for advancing the discovery of effective drug combinations
Karen A. Ryall, Aik Choon Tan · 2015 · Journal of Cheminformatics
Consensus on Molecular Subtypes of High-Grade Serous Ovarian Carcinoma
Gregory M. Chen, Lavanya Kannan, Ludwig Geistlinger, Victor Kofia, Zhaleh Safikhani, Deena M.A. Gendoo, Giovanni Parmigiani, Michael J. Birrer, Benjamin Haibe‐Kains, Levi Waldron · 2018 · Clinical Cancer Research
Haemopedia RNA-seq: a database of gene expression during haematopoiesis in mice and humans
Jarny Choi, Tracey M. Baldwin, Mae Wong, Jessica E. Bolden, Kirsten A. Fairfax, Erin C. Lucas, Rebecca Cole, Christine Biben, Clare Morgan, Kerry A Ramsay et al. · 2018 · Nucleic Acids Research
Microenvironmental IL-6 inhibits anti-cancer immune responses generated by cytotoxic chemotherapy
Eric Huttenlocher Bent, Luis R. Millán-Barea, Iris Zhuang, Daniel R. Goulet, Julia Fröse, Michael T. Hemann · 2021 · Nature Communications
PlantPAN 4.0: updated database for identifying conserved non-coding sequences and exploring dynamic transcriptional regulation in plant promoters
Chi-Nga Chow, Chien-Wen Yang, Nai-Yun Wu, Hung-Teng Wang, Kuan-Chieh Tseng, Yu-Hsuan Chiu, Tzong-Yi Lee, Wen-Chi Chang · 2023 · Nucleic Acids Research
Prognostic genome and transcriptome signatures in colorectal cancers
Luís Nunes, Fuqiang Li, Meizhen Wu, Tian Luo, Klara Hammarström, Emma Torell, Ingrid Ljuslinder, Artur Mezheyeuski, Per-Henrik D. Edqvist, Anna Löfgren‐Burström et al. · 2024 · Nature
A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies
Winston Patrick Kuo, Fang Liu, Jeffrey M. Trimarchi, Claudio Punzo, Michael J. Lombardi, Jasjit Sarang, Mark Whipple, Malini Maysuria, Kyle A. Serikawa, Sun Young Lee et al. · 2006 · Nature Biotechnology
GWAS for executive function and processing speed suggests involvement of the CADM2 gene
Ibrahim-Verbaas, C A, Bressler, J, Debette, S, Schuur, M, Smith, A V, Bis, J C, Davies, G, Trompet, S, Smith, J A, Wolf, C et al. · 2016 · Molecular Psychiatry
Transcriptome-Wide Binding Sites for Components of the Saccharomyces cerevisiae Non-Poly(A) Termination Pathway: Nrd1, Nab3, and Sen1
Tyler J. Creamer, Miranda M. Darby, Nuttara Jamonnak, Paul Schaughency, Haiping Hao, Sarah J. Wheelan, Jeffry L. Corden · 2011 · PLoS Genetics
GEOmetadb: powerful alternative search engine for the Gene Expression Omnibus
Yuelin Jack Zhu, Sean R. Davis, Robert M. Stephens, Paul S. Meltzer, Yidong Chen · 2008 · Bioinformatics
Gene expression in the human mammary epithelium during lactation: the milk fat globule transcriptome
Patricia Delfin Maningat, Partha Sen, Monique Rijnkels, Agneta L. Sunehag, Darryl L. Hadsell, Molly S. Bray, Morey W. Haymond · 2008 · Physiological Genomics
Variable chromatin structure revealed by in situ spatially correlated DNA cleavage mapping
Viviana I. Risca, Sarah K. Denny, Aaron F. Straight, William James Greenleaf · 2016 · Nature
Transcriptomic Landscape and Functional Characterization of Induced Pluripotent Stem Cell–Derived Cerebral Organoids in Schizophrenia
Annie Kathuria, Kara Lopez-Lengowski, Smita Jagtap, Donna L. McPhie, Roy H. Perlis, Bruce M. Cohen, Rakesh Karmacharya · 2020 · JAMA Psychiatry
The human TTAGGG repeat factors 1 and 2 bind to a subset of interstitial telomeric sequences and satellite repeats
Thomas Simonet, Laure‐Emmanuelle Zaragosi, Claude Philippe, Kévin Lebrigand, Clementine Schouteden, Adeline Augereau, Serge Bauwens, Jing Ye, Marco Santagostino, Elena Giulotto et al. · 2011 · Cell Research
The Emerging Role of Reactive Oxygen Species Signaling during Lateral Root Development
Concepción Manzano, Mercedes Pallero‐Baena, Ilda Casimiro, Bert De Rybel, Beata Orman-Ligeza, Gert Van Isterdael, Tom Beeckman, Xavier Draye, Pedro J. Casero, Juan Carlos del Pozo · 2014 · PLANT PHYSIOLOGY
Rapid and spontaneous loss of phthiocerol dimycocerosate (PDIM) from Mycobacterium tuberculosis grown in vitro: implications for virulence studies
Pilar Domenech, Michael B. Reed · 2009 · Microbiology
miRGator: an integrated system for functional annotation of microRNAs
Seungyoon Nam, Bong Soo Kim, Sue Shin, Soo‐Youn Lee · 2007 · Nucleic Acids Research
Dissection of T-cell Antigen Specificity in Human Melanoma
Rikke Sick Andersen, Charlotte Albæk Thrue, Niels Junker, Rikke Lyngaa, Marco Donia, Eva Ellebæk, Inge Marie Svane, Ton N. Schumacher, Per thor Straten, Sine Reker Hadrup · 2012 · Cancer Research
Big behavior: challenges and opportunities in a new era of deep behavior profiling
Lukas von Ziegler, Oliver Sturman, Johannes Bohacek · 2020 · Neuropsychopharmacology
Transcription factor genes of Schizophyllum commune involved in regulation of mushroom formation
Robin A. Ohm, Jan F. de Jong, Charissa de Bekker, Han A. B. Wösten, Luis G. Lugones · 2011 · Molecular Microbiology
Differences in Gastric Carcinoma Microenvironment Stratify According to EBV Infection Intensity: Implications for Possible Immune Adjuvant Therapy
Michael J. Strong, Guorong Xu, Joseph Coco, Carl Baribault, Dass S. Vinay, Michelle R. Lacey, Amy L. Strong, Teresa A. Lehman, Michael B. Seddon, Zhen Nan Lin et al. · 2013 · PLoS Pathogens
Tissue-Specific Functional Networks for Prioritizing Phenotype and Disease Genes
Yuanfang Guan, Dmitriy Gorenshteyn, Margit Burmeister, Aaron K. Wong, John C. Schimenti, Mary Ann Handel, Carol J. Bult, Matthew Hibbs, Olga G. Troyanskaya · 2012 · PLoS Computational Biology
Release of Severe Acute Respiratory Syndrome Coronavirus Nuclear Import Block Enhances Host Transcription in Human Lung Cells
Amy María Sims, Susan C. Tilton, Vineet D. Menachery, Lisa E. Gralinski, Alexandra Schäfer, Melissa M. Matzke, Bobbie‐Jo Webb‐Robertson, Jean Chang, Maria L. Luna, Casey Long et al. · 2013 · Journal of Virology
MyoD induces myogenic differentiation through cooperation of its NH2- and COOH-terminal regions
Jeff Ishibashi, Robert L. Perry, Atsushi Asakura, Michael A. Rudnicki · 2005 · The Journal of Cell Biology
Gene Expression Correlated with Severe Asthma Characteristics Reveals Heterogeneous Mechanisms of Severe Disease
Brian D. Modena, Eugene R. Bleecker, William W. Busse, SERPIL CEM ERZURUM, Benjamin M Gaston, Nizar N. Jarjour, Deborah A. Meyers, Jadranka Milošević, John R Tedrow, Wei Wu et al. · 2017 · American Journal of Respiratory and Critical Care Medicine
Genes reveal traces of common recent demographic history for most of the Uralic-speaking populations
Kristiina Tambets, Bayazit Yunusbayev, Georgi Hudjashov, Anne-Mai IlumĂ¤E, Siiri Rootsi, Terhi Honkola, Outi Vesakoski, Quentin Douglas Atkinson, Pontus Skoglund, Alena Kushniarevich et al. · 2018 · Genome biology
Prognostic gene expression signature for high-grade serous ovarian cancer
Joshua Millstein, Timothy Budden, Ellen L. Goode, Michael S. Anglesio, Aline Talhouk, Maria P. Intermaggio, Huei San Leong, Shuang Chen, Wafaa A. Elatre, C. Blake Gilks et al. · 2020 · Annals of Oncology
Low Dimensionality in Gene Expression Data Enables the Accurate Extraction of Transcriptional Programs from Shallow Sequencing
Heimberg, Graham, Bhatnagar, Rajat, El-Samad, Hana, Thomson, Matt · 2016 · Cell Systems
Microglia mediate neurocognitive deficits by eliminating C1q-tagged synapses in sepsis-associated encephalopathy
Chung, Ha-Yeun, Wickel, Jonathan, Hahn, Nina, Mein, Nils, Schwarzbrunn, Meike, Koch, Philipp, Ceanga, Mihai, Haselmann, Holger, Baade-Büttner, Carolin, von Stackelberg, Nikolai et al. · 2023 · Science Advances
Stress hormones promote EGFR inhibitor resistance in NSCLC: Implications for combinations with β-blockers
Nilsson, Monique B., Sun, Huiying, Diao, Lixia, Tong, Pan, Liu, Diane, Li, Lerong, Fan, Youhong, Poteete, Alissa, Lim, Seung-Oe, Howells, Kathryn et al. · 2017 · Science Translational Medicine
Lactobacillus acidophilus induces virus immune defence genes in murine dendritic cells by a Toll‐like receptor‐2‐dependent mechanism
Gudrun Weiss, Simon Rasmussen, Louise Zeuthen, Birgit Nøhr Nielsen, Hanne Østergaard Jarmer, Lene Jespersen, Hanne Frøkiær · 2010 · Immunology
Widespread translational control contributes to the regulation of Arabidopsis photomorphogenesis
Ming‐Jung Liu, Szu‐Hsien Wu, Ho‐Ming Chen, Shu‐Hsing Wu · 2012 · Molecular Systems Biology
A hybrid gene selection approach to create the S1500+ targeted gene sets for use in high-throughput transcriptomics
Deepak Mav, Ruchir Shah, Brian E. Howard, Scott S. Auerbach, Pierre R. Bushel, Jennifer B. Collins, David Lee Gerhold, Richard Judson, Agnes L. Karmaus, Elizabeth A. Maull et al. · 2018 · PLoS ONE
Adult stem cell-derived complete lung organoid models emulate lung disease in COVID-19
Courtney Tindle, Mackenzie Fuller, Ayden G. Fonseca, Sahar Taheri, Stella‐Rita Ibeawuchi, Nathan Beutler, Gajanan Dattatray Katkar, Amanraj Claire, Vanessa Castillo, Moises Hernandez et al. · 2021 · eLife
Piwi-Interacting RNAs Protect DNA against Loss during Oxytricha Genome Rearrangement
Wenwen Fang, Xing Wang, John R. Bracht, Mariusz Nowacki, Laura F. Landweber · 2012 · Cell
dtangle: accurate and robust cell type deconvolution
Gregory J. Hunt, Saskia Freytag, Melanie Bahlo, Johann A. Gagnon-Bartsch · 2018 · Bioinformatics
The autoimmune signature of hyperinflammatory multisystem inflammatory syndrome in children
Rebecca A. Porritt, Aleksandra Binek, Lisa Paschold, Magali Noval Rivas, Angela McArdle, Lael M. Yonker, Galit Alter, Harsha K. Chandnani, Merrick Lopez, Alessio Fasano et al. · 2021 · Journal of Clinical Investigation
Deciphering priming-induced improvement of rapeseed (Brassica napus L.) germination through an integrated transcriptomic and proteomic approach
Szymon Kubala, Małgorzata Garnczarska, Łukasz Wojtyla, André Clippe, Arkadiusz Kosmala, Agnieszka Żmieńko, Stanley Lutts, Muriel Quinet · 2014 · Plant Science
FOXD1 promotes nephron progenitor differentiation by repressing decorin in the embryonic kidney
Jennifer L. Fetting, Justin A. Guay, Michele J. Karolak, Renato V. Iozzo, Derek C. Adams, David E. Maridas, Aaron Clifford Brown, Leif H. Oxburgh · 2013 · Development
Down-weighting overlapping genes improves gene set analysis
Adi Laurentiu Tarca, Sorin Drăghici, Gaurav Bhatti, Roberto J. Romero · 2012 · BMC Bioinformatics
The chemoattractant chemerin suppresses melanoma by recruiting natural killer cell antitumor defenses
Russell Kent Pachynski, Brian A. Zabel, Holbrook E K Kohrt, Nicole Tejeda, Justin Monnier, Christina Swanson, Alison K. Holzer, Andrew J. Gentles, Gizette V. Sperinde, Abdolhossein Edalati et al. · 2012 · The Journal of Experimental Medicine
Human plasma and serum extracellular small RNA reference profiles and their clinical utility
Klaas E.A. Max, Karl Bertram, Kemal Marc Akat, Kimberly A. Bogardus, Jenny Li, Pavel S Morozov, Iddo Z. Ben‐Dov, Xin Li, Zachary R. Weiss, Azadeh Azizian et al. · 2018 · Proceedings of the National Academy of Sciences
The Mouse Cytosine-5 RNA Methyltransferase NSun2 Is a Component of the Chromatoid Body and Required for Testis Differentiation
Shobbir Hussain, Francesca Tuorto, Suraj Menon, Sandra Blanco, Claire Cox, Joana V. Flores, Stephen B. Watt, Nobuaki R. Kudo, Frank Lyko, Michaela Frye · 2013 · Molecular and Cellular Biology
Stem cells isolated from adipose tissue of obese patients show changes in their transcriptomic profile that indicate loss in stemcellness and increased commitment to an adipocyte-like phenotype
Blanca Oñate, Gemma Vilahur, Sandra Camino-López, Alberto Diez-Caballero, Carlos Ballesta‐López, Juan Ybarra, Fabrizio Moscatiello, Javier Herrero, Lina Badimón · 2013 · BMC Genomics
Metal Dyshomeostasis and Inflammation in Alzheimer’s and Parkinson’s Diseases: Possible Impact of Environmental Exposures
Oddvar Myhre, Hans Utkilen, Nur Duale, Gunnar Brunborg, Tim Hofer · 2013 · Oxidative Medicine and Cellular Longevity
Comparative microarray analysis of microRNA expression profiles in primary cutaneous malignant melanoma, cutaneous malignant melanoma metastases, and benign melanocytic nevi
Michael S. Sand, Marina Skrygan, Daniel Sand, Dimitrios Georgas, Thilo Gambichler, Stephan A. Hahn, Peter Josef Altmeyer, Falk G. Bechara · 2012 · Cell and Tissue Research
Global transcriptome profiling of wild soybean (Glycine soja) roots under NaHCO3treatment
Ying Ge, Yong Li, Yanming Zhu, Xi Bai, Dekang Lv, Dianjing Guo, Wei Ji, Hua Cai · 2010 · BMC Plant Biology
Parallel Epigenomic and Transcriptomic Responses to Viral Infection in Honey Bees (Apis mellifera)
David A. Galbraith, Xingyu Yang, Elina L. Niño, Soojin V. Yi, Christina M. Grozinger · 2015 · PLoS Pathogens
Acetylation of histone H3 at lysine 64 regulates nucleosome dynamics and facilitates transcription
Vincenzo Di Cerbo, Fabio Mohn, Daniel Ryan, Emilie Montellier, Salim Kacem, Philipp Tropberger, Eleni Kallis, Monika Holzner, Leslie Hoerner, Angelika Feldmann et al. · 2014 · eLife
A single-cell atlas and lineage analysis of the adult Drosophila ovary
Katja Rust, Lauren E. Byrnes, Kevin Shengyang Yu, Jason S. Park, Julie B. Sneddon, Aaron D. Tward, Todd G. Nystul · 2020 · Nature Communications
Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress
Vikas Belamkar, Nathan T. Weeks, Arvind K. Bharti, Andrew D Farmer, Michelle A. Graham, Steven B. Cannon · 2014 · BMC Genomics
Functional annotation and network reconstruction through cross-platform integration of microarray data
Xianghong Jasmine Zhou, Ming‐Chih Jeffrey Kao, Haiyan Huang, Angela Wong, Juan Nunez-Iglesias, Michael Primig, Oscar M. Aparicio, Caleb E. Finch, Todd E. Morgan, Wing Hung Wong · 2005 · Nature Biotechnology
Seed production temperature regulation of primary dormancy occurs through control of seed coat phenylpropanoid metabolism
Dana R. MacGregor, Sarah L. Kendall, Hannah Florance, Fabio Fedi, Karen Moore, Konrad H. Paszkiewicz, Nicholas Smirnoff, Steven D. Penfield · 2014 · New Phytologist
A mechanism for the segregation of age in mammalian neural stem cells
Darcie L. Moore, Gregor-Alexander Pilz, Marcos Jesus Araúzo-Bravo, Yves Barral, Sebastian Jessberger · 2015 · Science
TFLink: an integrated gateway to access transcription factor–target gene interactions for multiple species
Orsolya Liska, Balázs Bohár, András Hidas, Tamás Korcsmáros, Balázs Papp, Dávid Fazekas, Eszter EA Ari · 2022 · Database
Reciprocal effects on neurocognitive and metabolic phenotypes in mouse models of 16p11.2 deletion and duplication syndromes
Arbogast, Thomas, Ouagazzal, Abdel-Mouttalib, Chevalier, Claire, Kopanitsa, Maksym, Afinowi, Nurudeen, Migliavacca, Eugenia, Cowling, Belinda S., Birling, Marie-Christine, Champy, Marie-France, Reymond, Alexandre et al. · 2016 · PLOS Genetics
T H 17 cells require ongoing classic IL-6 receptor signaling to retain transcriptional and functional identity
Harbour, Stacey N., DiToro, Daniel F., Witte, Steven J., Zindl, Carlene L., Gao, Min, Schoeb, Trenton R., Jones, Gareth W., Jones, Simon A., Hatton, Robin D., Weaver, Casey T. · 2020 · Science Immunology
PD-1 axis expression in musculoskeletal tumors and antitumor effect of nivolumab in osteosarcoma model of humanized mouse
Zheng, Bingxin, Ren, Tingting, Huang, Yi, Sun, Kunkun, Wang, Shidong, Bao, Xing, Liu, Kuisheng, Guo, Wei · 2018 · Journal of Hematology & Oncology
Transcriptomic Analyses during the Transition from Biomass Production to Lipid Accumulation in the Oleaginous Yeast Yarrowia lipolytica
Nicolas Morin, Julien Cescut, Athanasios Béopoulos, Gaëlle Lelandais, Véronique Le Berre, Jean-Louis Uribelarrea, Carole Molina‐Jouve, Jean‐Marc Nicaud · 2011 · PLoS ONE
Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing
Philippe Lefrançois, Ghia M. Euskirchen, Raymond K. Auerbach, Joel S. Rozowsky, Theodore Gibson, Christopher M. Yellman, Mark Gerstein, Michael P. Snyder · 2009 · BMC Genomics
Analysis of the RelA:CBP/p300 Interaction Reveals Its Involvement in NF-κB-Driven Transcription
Sulakshana P. Mukherjee, Marcelo Behar, Harry A. Birnbaum, Alexander Hoffmann, Peter E. Wright, Gourisankar Ghosh · 2013 · PLoS Biology
Quadruplex Turncoats: Cation-Dependent Folding and Stability of Quadruplex-DNA Double Switches
Eric Largy, Adrien Marchand, Samir Amrane, Valérie Gabelica, Jean‐Louis Mergny · 2016 · Journal of the American Chemical Society
JAK-STAT and G-protein-coupled receptor signaling pathways are frequently altered in epitheliotropic intestinal T-cell lymphoma
Maarja‐Liisa Nairismägi, Jing Ying Tan, Jing Quan Lim, Sanjanaa Nagarajan, Cedric Chuan Young Ng, Vikneswari Rajasegaran, Dachuan Huang, Weng Khong Lim, Yurike Laurensia, Giovani-Claresta Wijaya et al. · 2016 · Leukemia
GATA3-dependent cellular reprogramming requires activation-domain dependent recruitment of a chromatin remodeler
Takaku, Motoki, Grimm, Sara A., Shimbo, Takashi, Perera, Lalith, Menafra, Roberta, Stunnenberg, Hendrik G., Archer, Trevor K., Machida, Shinichi, Kurumizaka, Hitoshi, Wade, Paul A. · 2016 · Genome Biology
Metabolic Effects of a Chronic Dietary Exposure to a Low-Dose Pesticide Cocktail in Mice: Sexual Dimorphism and Role of the Constitutive Androstane Receptor
Céline Lukowicz, Sandrine Ellero‐Simatos, Marion Régnier, Arnaud Polizzi, Frédéric Lasserre, Alexandra Montagner, Yannick Lippi, Emilien L. Jamin, Jean‐François Martin, Claire Naylies et al. · 2018 · Environmental Health Perspectives
Chromatin state marks cell-type- and gender-specific replication of the Drosophila genome
Michaela Schwaiger, Michael Beda Stadler, Oliver Bell, Hubertus Kohler, Edward J. Oakeley, Dirk Schübeler · 2009 · Genes & Development
miR-10b-5p expression in Huntington’s disease brain relates to age of onset and the extent of striatal involvement
Hoss, Andrew G, Labadorf, Adam, Latourelle, Jeanne C, Kartha, Vinay K, Hadzi, Tiffany C, Gusella, James F, MacDonald, Marcy E, Chen, Jiang-Fan, Akbarian, Schahram, Weng, Zhiping et al. · 2015 · BMC Medical Genomics
Progress in the use of microarray technology to study the neurobiology of disease
Mirnics, Károly, Pevsner, Jonathan · 2004 · Nature Neuroscience
Data standards can boost metabolomics research, and if there is a will, there is a way
Philippe Rocca‐Serra, Reza M. Salek, Masanori Arita, Elon Santos Correa, Saravanan Dayalan, Alejandra N Gonzalez-Beltran, Timothy M. D. Ebbels, Royston Goodacre, Janna Hastings, Kenneth Haug et al. · 2015 · Metabolomics
Spatiotemporal compartmentalization of hepatic NADH and NADPH metabolism
Russell P. Goodman, Sarah E. Calvo, Vamsi K. Mootha · 2018 · Journal of Biological Chemistry
Inhibition of microbiota-dependent TMAO production attenuates chronic kidney disease in mice
Wenchao Zhang, Aika Miikeda, Jonathan E. Zuckerman, Xun Jia, Sarada Charugundla, Zhiqiang Zhou, Karolina Elżbieta Kaczor‐Urbanowicz, Clara E. Magyar, Fangfei Guo, Zeneng Wang et al. · 2021 · Scientific Reports
Artificial Intelligence for Alzheimer’s Disease: Promise or Challenge?
Carlo Fabrizio, Andrea Termine, Carlo Caltagirone, Giulia Maria Sancesario · 2021 · Diagnostics
Evolutionary significance of gene expression divergence
I. King Jordan, Leonardo Mariño‐Ramírez, Eugene V. Koonin · 2004 · Gene
Targeted exploration and analysis of large cross-platform human transcriptomic compendia
Qian Zhu, Aaron K. Wong, Arjun Krishnan, Miriam R. R. Aure, Alicja Tadych, Ran Zhang, David C. Corney, Casey S. Greene, Lars Ailo Bongo, Vessela N. Kristensen et al. · 2015 · Nature Methods
Precise probes of type II interferon activity define the origin of interferon signatures in target tissues in rheumatic diseases
John C. Hall, Livia A Casciola-Rosen, Alan E. Berger, Efstathia K. Kapsogeorgou, Chris Cheadle, Athanasios G. Tzioufas, Alan N. Baer, Antony Rosen · 2012 · Proceedings of the National Academy of Sciences
CEBS Chemical Effects in Biological Systems: a public data repository integrating study design and toxicity data with microarray and proteomics data
Michael D. Waters, Stanley Stasiewicz, Bruce Alex Merrick, Kenneth B. Tomer, Pierre R. Bushel, Richard S. Paules, Natalie Stegman, Gerald J. Nehls, K. J. Yost, C. H. Johnson et al. · 2007 · Nucleic Acids Research