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Zinc-finger nuclease-driven targeted integration into mammalian genomes using donors with limited chromosomal homology

Orlando, Salvatore J., Santiago, Yolanda, DeKelver, Russell C., Freyvert, Yevgeniy, Boydston, Elizabeth A., Moehle, Erica A., Choi, Vivian M., Gopalan, Sunita M., Lou, Jacqueline F., Li, James, Miller, Jeffrey C., Holmes, Michael C., Gregory, Philip D., Urnov, Fyodor D., Cost, Gregory J.·2010·Nucleic Acids Research

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  1. Kwaks, 2006, Employing epigenetics to augment the expression of therapeutic proteins in mammalian cells, Trends Biotechnol., 24, 137, 10.1016/j.tibtech.2006.01.007 · DOI
  2. Thomas, 1986, High frequency targeting of genes to specific sites in the mammalian genome, Cell, 44, 419, 10.1016/0092-8674(86)90463-0 · DOI
  3. Koller, 1989, Germ-line transmission of a planned alteration made in a hypoxanthine phosphoribosyltransferase gene by homologous recombination in embryonic stem cells, Proc. Natl Acad. Sci. USA, 86, 8927, 10.1073/pnas.86.22.8927 · DOI
  4. Deng, 1992, Reexamination of gene targeting frequency as a function of the extent of homology between the targeting vector and the target locus, Mol. Cell Biol., 12, 3365, 10.1128/MCB.12.8.3365 · DOI
  5. Sedivy, 1992, Gene Targeting
  6. Rouet, 1994, Expression of a site-specific endonuclease stimulates homologous recombination in mammalian cells, Proc. Natl Acad. Sci. USA, 91, 6064, 10.1073/pnas.91.13.6064 · DOI
  7. Pavletich, 1991, Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 A, Science, 252, 809, 10.1126/science.2028256 · DOI
  8. Pabo, 2001, Design and selection of novel Cys2His2 zinc finger proteins, Annu. Rev. Biochem., 70, 313, 10.1146/annurev.biochem.70.1.313 · DOI
  9. Kim, 1996, Hybrid restriction enzymes: zinc finger fusions to Fok I cleavage domain, Proc. Natl Acad. Sci. USA, 93, 1156, 10.1073/pnas.93.3.1156 · DOI · Paper page
  10. Smith, 1999, A detailed study of the substrate specificity of a chimeric restriction enzyme, Nucleic Acids Res., 27, 674, 10.1093/nar/27.2.674 · DOI
  11. Weterings, 2004, The mechanism of non-homologous end-joining: a synopsis of synapsis, DNA Repair, 3, 1425, 10.1016/j.dnarep.2004.06.003 · DOI
  12. Moehle, 2007, Targeted gene addition into a specified location in the human genome using designed zinc finger nucleases, Proc. Natl Acad. Sci. USA, 104, 3055, 10.1073/pnas.0611478104 · DOI
  13. Hockemeyer, 2009, Efficient targeting of expressed and silent genes in human ESCs and iPSCs using zinc-finger nucleases, Nat. Biotechnol., 27, 851, 10.1038/nbt.1562 · DOI
  14. Baudin, 1993, A simple and efficient method for direct gene deletion in Saccharomyces cerevisiae, Nucleic Acids Res., 21, 3329, 10.1093/nar/21.14.3329 · DOI
  15. Haviv-Chesner, 2007, Capture of linear fragments at a double-strand break in yeast, Nucleic Acids Res., 35, 5192, 10.1093/nar/gkm521 · DOI
  16. Moore, 1996, Capture of retrotransposon DNA at the sites of chromosomal double-strand breaks, Nature, 383, 644, 10.1038/383644a0 · DOI
  17. Yu, 1999, Patching broken chromosomes with extranuclear cellular DNA, Mol. Cell, 4, 873, 10.1016/S1097-2765(00)80397-4 · DOI
  18. Lin, 2001, Capture of DNA sequences at double-strand breaks in mammalian chromosomes, Genetics, 158, 1665, 10.1093/genetics/158.4.1665 · DOI
  19. Lin, 2001, Promiscuous patching of broken chromosomes in mammalian cells with extrachromosomal DNA, Nucleic Acids Res., 29, 3975, 10.1093/nar/29.19.3975 · DOI
  20. Malphettes, 2010, Highly-efficient deletion of FUT8 in CHO cell lines using zinc-finger nucleases yields cells which produce completely nonfucosylated antibodies, Biotechnol. Bioeng., 10.1002/bit.22751 · DOI · Paper page
  21. Urnov, 2005, Highly efficient endogenous human gene correction using designed zinc-finger nucleases, Nature, 435, 646, 10.1038/nature03556 · DOI
  22. Miller, 2007, An improved zinc-finger nuclease architecture for highly specific genome editing, Nat. Biotechnol., 25, 778, 10.1038/nbt1319 · DOI · Paper page
  23. Cost, 2009, BAK and BAX deletion using zinc-finger nucleases yields apoptosis-resistant CHO cells, Biotechnol. Bioeng., 105, 330, 10.1002/bit.22541 · DOI
  24. DeKelver, 2010, Functional genomics, proteomics, and regulatory DNA analysis in isogenic settings using zinc finger nuclease-driven transgenesis into a safe harbor locus in the human genome, Genome Res., 10.1101/gr.106773.110 · DOI
  25. Hanin, 2001, Gene targeting in Arabidopsis, Plant J., 28, 671, 10.1046/j.1365-313x.2001.01183.x · DOI
  26. Smith, 2000, Requirements for double-strand cleavage by chimeric restriction enzymes with zinc finger DNA-recognition domains, Nucleic Acids Res., 28, 3361, 10.1093/nar/28.17.3361 · DOI
  27. Lee, 2009, Targeted chromosomal deletions in human cells using zinc finger nucleases, Genome Res., 20, 81, 10.1101/gr.099747.109 · DOI
  28. Richardson, 2000, Coupled homologous and nonhomologous repair of a double-strand break preserves genomic integrity in mammalian cells, Mol. Cell Biol., 20, 9068, 10.1128/MCB.20.23.9068-9075.2000 · DOI
  29. Aratani, 1992, End extension repair of introduced targeting vectors mediated by homologous recombination in mammalian cells, Nucleic Acids Res., 20, 4795, 10.1093/nar/20.18.4795 · DOI
  30. Merrihew, 1996, High-frequency illegitimate integration of transfected DNA at preintegrated target sites in a mammalian genome, Mol. Cell Biol., 16, 10, 10.1128/MCB.16.1.10 · DOI
  31. Waldman, 1988, Dependence of intrachromosomal recombination in mammalian cells on uninterrupted homology, Mol. Cell Biol., 8, 5350, 10.1128/MCB.8.12.5350 · DOI
  32. Ira, 2002, Characterization of RAD51-independent break-induced replication that acts preferentially with short homologous sequences, Mol. Cell Biol., 22, 6384, 10.1128/MCB.22.18.6384-6392.2002 · DOI
  33. Haber, 1995, In vivo biochemistry: physical monitoring of recombination induced by site-specific endonucleases, Bioessays, 17, 609, 10.1002/bies.950170707 · DOI
  34. Eckstein, 2000, Phosphorothioate oligodeoxynucleotides: what is their origin and what is unique about them?, Antisense Nucleic Acid Drug Dev., 10, 117, 10.1089/oli.1.2000.10.117 · DOI
  35. Zeevi, 2008, Increasing cloning possibilities using artificial zinc finger nucleases, Proc. Natl Acad. Sci. USA, 105, 12785, 10.1073/pnas.0803618105 · DOI
  36. Radecke, 2010, Zinc-finger nuclease-induced gene repair with oligodeoxynucleotides: wanted and unwanted target locus modifications, Mol. Ther., 18, 743, 10.1038/mt.2009.304 · DOI
  37. Yun, 2009, CtIP-BRCA1 modulates the choice of DNA double-strand-break repair pathway throughout the cell cycle, Nature, 459, 460, 10.1038/nature07955 · DOI · Paper page
  38. Storici, 2003, Chromosomal site-specific double-strand breaks are efficiently targeted for repair by oligonucleotides in yeast, Proc. Natl Acad. Sci. USA, 100, 14994, 10.1073/pnas.2036296100 · DOI
  39. Storici, 2006, Conservative repair of a chromosomal double-strand break by single-strand DNA through two steps of annealing, Mol. Cell Biol., 26, 7645, 10.1128/MCB.00672-06 · DOI
  40. Ivics, 2007, Targeted Sleeping Beauty transposition in human cells, Mol. Ther., 15, 1137, 10.1038/sj.mt.6300169 · DOI
  41. Feng, and Colloms, S.D. Precise targeted integration by a chimaeric transposase zinc-finger fusion protein, Nucleic Acids Res., 38, 1204, 10.1093/nar/gkp1068 · DOI
  42. Gersbach, and Barbas, C.F. III. Directed evolution of recombinase specificity by split gene reassembly, Nucleic Acids Res.
  43. Gordley, 2007, Evolution of programmable zinc finger-recombinases with activity in human cells, J. Mol. Biol., 367, 802, 10.1016/j.jmb.2007.01.017 · DOI
  44. Gordley, 2009, Synthesis of programmable integrases, Proc. Natl Acad. Sci. USA, 106, 5053, 10.1073/pnas.0812502106 · DOI
  45. Marschall, 1999, Transfer of YACs up to 2.3 Mb intact into human cells with polyethylenimine, Gene Ther., 6, 1634, 10.1038/sj.gt.3300975 · DOI
  46. Walker, 2001, Structure of the Ku heterodimer bound to DNA and its implications for double-strand break repair, Nature, 412, 607, 10.1038/35088000 · DOI
  47. Sandoval, 2004, High G/C content of cohesive overhangs renders DNA end joining Ku-independent, DNA Repair, 3, 13, 10.1016/j.dnarep.2003.08.014 · DOI

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Metadata

Authors
Orlando, S. J., Santiago, Y., DeKelver, R. C., Freyvert, Y., Boydston, E. A., Moehle, E. A., Choi, V. M., Gopalan, S. M., Lou, J. F., Li, J., Miller, J. C., Holmes, M. C., Gregory, P. D., Urnov, F. D., & Cost, G. J.
Venue
Nucleic Acids Research
Published
2010-06-08
Volume
38
Issue
15
Pages
e152-e152
ISSN
  • 1362-4962
  • 0305-1048
Cited by
174
References
5
Language
en

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