The DOI matches its Crossref record; 47 of the 47 references it cites were found in a registry or an index.
RNAcentral: a comprehensive database of non-coding RNA sequences
Open accessAbstract
RNAcentral is a database of non-coding RNA (ncRNA) sequences that aggregates data from specialised ncRNA resources and provides a single entry point for accessing ncRNA sequences of all ncRNA types from all organisms. Since its launch in 2014, RNAcentral has integrated twelve new resources, taking the total number of collaborating database to 22, and began importing new types of data, such as modified nucleotides from MODOMICS and PDB. We created new species-specific identifiers that refer to unique RNA sequences within a context of single species. The website has been subject to continuous improvements focusing on text and sequence similarity searches as well as genome browsing functionality. All RNAcentral data is provided for free and is available for browsing, bulk downloads, and programmatic access at http://rnacentral.org/.
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Cites
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
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Self-citationRibosomal Database Project: data and tools for high throughput rRNA analysis
Cole, J. R., Wang, Q., Fish, J. A., Chai, B., McGarrell, D. M., Sun, Y., Brown, C. T., Porras-Alfaro, A., Kuske, C. R., & Tiedje, J. M. (2014) · Nucleic Acids Research · doi:10.1093/nar/gkt1244 · Cited by 4,367
Self-citationSaccharomyces Genome Database: the genomics resource of budding yeast
Cherry, J. M., Hong, E. L., Amundsen, C., Balakrishnan, R., Binkley, G., Chan, E. T., Christie, K. R., Costanzo, M. C., Dwight, S. S., Engel, S. R., et al. (2012) · Nucleic Acids Research · doi:10.1093/nar/gkr1029 · Cited by 1,796
Self-citationCannone, J. J., Subramanian, S., Schnare, M. N., Collett, J. R., D'Souza, L. M., Du, Y., Feng, B., Lin, N., Madabusi, L. V., Müller, K. M., et al. (2002) · BMC Bioinformatics · doi:10.1186/1471-2105-3-2 · Cited by 1,612
Self-citationYates, A., Akanni, W., Amode, M. R., Barrell, D., Billis, K., Carvalho-Silva, D., Cummins, C., Clapham, P., Fitzgerald, S., Gil, L., et al. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkv1157 · Cited by 1,273
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Self-citationRfam 12.0: updates to the RNA families database
Nawrocki, E. P., Burge, S. W., Bateman, A., Daub, J., Eberhardt, R. Y., Eddy, S. R., Floden, E. W., Gardner, P. P., Jones, T. A., Tate, J., et al. (2015) · Nucleic Acids Research · doi:10.1093/nar/gku1063 · Cited by 1,071
Self-citationGtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomes
Chan, P. P., & Lowe, T. M. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkv1309 · Cited by 1,051
Self-citationMODOMICS: a database of RNA modification pathways—2013 update
Machnicka, M. A., Milanowska, K., Osman Oglou, O., Purta, E., Kurkowska, M., Olchowik, A., Januszewski, W., Kalinowski, S., Dunin-Horkawicz, S., Rother, K. M., et al. (2012) · Nucleic Acids Research · doi:10.1093/nar/gks1007 · Cited by 1,013
Self-citation
Cited by
miRBase: from microRNA sequences to function
Kozomara, A., Birgaoanu, M., & Griffiths-Jones, S. (2019) · Nucleic Acids Research · doi:10.1093/nar/gky1141 · Cited by 4,843
Self-citationTowards a complete map of the human long non-coding RNA transcriptome
Uszczynska-Ratajczak, B., Lagarde, J., Frankish, A., Guigó, R., & Johnson, R. (2018) · Nature Reviews Genetics · doi:10.1038/s41576-018-0017-y · Cited by 616
Self-citationLNCipedia 5: towards a reference set of human long non-coding RNAs
Volders, P.-J., Anckaert, J., Verheggen, K., Nuytens, J., Martens, L., Mestdagh, P., & Vandesompele, J. (2019) · Nucleic Acids Research · doi:10.1093/nar/gky1031 · Cited by 547
Self-citationEngineering salinity tolerance in plants: progress and prospects
Wani, S. H., Kumar, V., Khare, T., Guddimalli, R., Parveda, M., Solymosi, K., Suprasanna, P., & Kavi Kishor, P. B. (2020) · Planta · doi:10.1007/s00425-020-03366-6 · Cited by 233
LinearFold: linear-time approximate RNA folding by 5'-to-3' dynamic programming and beam search
Huang, L., Zhang, H., Deng, D., Zhao, K., Liu, K., Hendrix, D. A., & Mathews, D. H. (2019) · Bioinformatics · doi:10.1093/bioinformatics/btz375 · Cited by 207
“It is able to fold the longest sequence in RNAcentral (244 296nt) within 3 min, while neither CONTRAfold or RNAfold runs on anything longer than 32 767nt due to datastructure limitations.”
BackgroundInfluential
Metadata
- Authors
- The RNAcentral Consortium, Petrov, A. I., Kay, S. J. E., Kalvari, I., Howe, K. L., Gray, K. A., Bruford, E. A., Kersey, P. J., Cochrane, G., Finn, R. D., Bateman, A., Kozomara, A., Griffiths-Jones, S., Frankish, A., Zwieb, C. W., Lau, B. Y., Williams, K. P., Chan, P. P., Lowe, T. M., Cannone, J. J., Gutell, R., Machnicka, M. A., Bujnicki, J. M., Yoshihama, M., Kenmochi, N., Chai, B., Cole, J. R., Szymanski, M., Karlowski, W. M., Wood, V., Huala, E., Berardini, T. Z., Zhao, Y., Chen, R., Zhu, W., Paraskevopoulou, M. D., Vlachos, I. S., Hatzigeorgiou, A. G., Ma, L., Zhang, Z., Puetz, J., Stadler, P. F., McDonald, D., Basu, S., Fey, P., Engel, S. R., Cherry, J. M., Volders, P.-J., Mestdagh, P., Wower, J., Clark, M. B., Quek, X. C., & Dinger, M. E.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2016-10-28
- Volume
- 45
- Issue
- D1
- Pages
- D128-D134
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2596417560
- Cited by
- 258
- References
- 47
- FWCI
- 10.08
- Type
- journal article
- Language
- en
- Open access
- gold
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- CoChat. (2026). Citation check: RNAcentral: a comprehensive database of non-coding RNA sequences. https://app.cochat.ai/papers/10.1093/nar/gkw1008
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- The RNAcentral Consortium, Petrov, A. I., Kay, S. J. E., Kalvari, I., Howe, K. L., Gray, K. A., Bruford, E. A., Kersey, P. J., Cochrane, G., Finn, R. D., Bateman, A., Kozomara, A., Griffiths-Jones, S., Frankish, A., Zwieb, C. W., Lau, B. Y., Williams, K. P., Chan, P. P., Lowe, T. M., . . . Dinger, M. E. (2017). RNAcentral: a comprehensive database of non-coding RNA sequences. Nucleic Acids Research. https://doi.org/10.1093/nar/gkw1008
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