The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.
GenBank
Open accessAbstract
(www.ncbi.nlm.nih.gov/genbank/) is a comprehensive database that contains publicly available nucleotide sequences for 370 000 formally described species. These sequences are obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects, including whole genome shotgun (WGS) and environmental sampling projects. Most submissions are made using the web-based BankIt or the NCBI Submission Portal. GenBank staff assign accession numbers upon data receipt. Daily data exchange with the European Nucleotide Archive (ENA) and the DNA Data Bank of Japan (DDBJ) ensures worldwide coverage. GenBank is accessible through the NCBI Nucleotide database, which links to related information such as taxonomy, genomes, protein sequences and structures, and biomedical journal literature in PubMed. BLAST provides sequence similarity searches of GenBank and other sequence databases. Complete bimonthly releases and daily updates of the GenBank database are available by FTP. Recent updates include changes to policies regarding sequence identifiers, an improved 16S submission wizard, targeted loci studies, the ability to submit methylation and BioNano mapping files, and a database of anti-microbial resistance genes.
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Citations
Cites
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Altschul, S. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.17.3389 · Cited by 73,302
Direct detection of DNA methylation during single-molecule, real-time sequencing
Flusberg, B. A., Webster, D. R., Lee, J. H., Travers, K. J., Olivares, E. C., Clark, T. A., Korlach, J., & Turner, S. W. (2010) · Nature Methods · doi:10.1038/nmeth.1459 · Cited by 1,460 · cited 1×
“GenBank now accepts analysis files derived from SMRT sequencing provided by Pacific Biosciences (6).”
MethodFederhen, S. (2012) · Nucleic Acids Research · doi:10.1093/nar/gkr1178 · Cited by 1,436
Research works printed but not linked: 16
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- 10.1093/nar/gkv1105 · DOI
- 10.1093/nar/gkv1323 · DOI
- 10.1093/nar/gkv1290 · DOI
- 10.1093/nar/gkq673 · DOI
- Stankova, 2016, BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes, Plant Biotechnol. J., 14, 1523, 10.1111/pbi.12513 · DOI
- 10.1093/nar/gku1127 · DOI
- 10.1093/nar/gkt1146 · DOI · Paper page
- 10.1093/nar/gkr1202 · DOI
- 10.1093/nar/gkr854 · DOI · Paper page
- 10.1016/S0076-6879(96)66012-1 · DOI
- 10.1093/nar/gkr1163 · DOI · Paper page
- 10.1093/nar/gkv1226 · DOI · Paper page
- 10.1093/nar/26.17.3986 · DOI · Paper page
- 10.1093/nar/gkt282 · DOI · Paper page
Cited by
HMDB 4.0: the human metabolome database for 2018
Wishart, D. S., Feunang, Y. D., Marcu, A., Guo, A. C., Liang, K., Vázquez-Fresno, R., Sajed, T., Johnson, D., Li, C., Karu, N., et al. (2018) · Nucleic Acids Research · doi:10.1093/nar/gkx1089 · Cited by 3,438
Kim, S., Chen, J., Cheng, T., Gindulyte, A., He, J., He, S., Li, Q., Shoemaker, B. A., Thiessen, P. A., Yu, B., et al. (2023) · Nucleic Acids Research · doi:10.1093/nar/gkac956 · Cited by 3,443
Benson, D. A., Cavanaugh, M., Clark, K., Karsch-Mizrachi, I., Ostell, J., Pruitt, K. D., & Sayers, E. W. (2018) · Nucleic Acids Research · doi:10.1093/nar/gkx1094 · Cited by 760
Self-citationThe international nucleotide sequence database collaboration
Karsch-Mizrachi, I., Takagi, T., Cochrane, G., & on behalf of the International Nucleotide Sequence Database Collaboration (2018) · Nucleic Acids Research · doi:10.1093/nar/gkx1097 · Cited by 190
Self-citationIMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata
Camargo, A. P., Call, L., Roux, S., Nayfach, S., Huntemann, M., Palaniappan, K., Ratner, A., Chu, K., Mukherjeep, S., Reddy, T. B. K., et al. (2024) · Nucleic Acids Research · doi:10.1093/nar/gkad964 · Cited by 87
Scalable multiple whole-genome alignment and locally collinear block construction with SibeliaZ
Minkin, I., & Medvedev, P. (2020) · Nature Communications · doi:10.1038/s41467-020-19777-8 · Cited by 77
Exploring the reservoir of potential fungal plant pathogens in agricultural soil
Agtmaal, M. V., Straathof, A., Termorshuizen, A., Teurlincx, S., Hundscheid, M., Ruyters, S., Busschaert, P., Lievens, B., & Boer, W. D. (2017) · Applied Soil Ecology · doi:10.1016/j.apsoil.2017.09.032 · Cited by 62
Environmental conditions shape the nature of a minimal bacterial genome
Antczak, M., Michaelis, M., & Wass, M. N. (2019) · Nature Communications · doi:10.1038/s41467-019-10837-2 · Cited by 55
Mannelli, F., Daghio, M., Alves, S. P., Bessa, R. J. B., Minieri, S., Giovannetti, L., Conte, G., Mele, M., Messini, A., Rapaccini, S., et al. (2019) · Microorganisms · doi:10.3390/microorganisms7070202 · Cited by 33
Metadata
- Authors
- Benson, D. A., Cavanaugh, M., Clark, K., Karsch-Mizrachi, I., Lipman, D. J., Ostell, J., & Sayers, E. W.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2016-11-28
- Volume
- 45
- Issue
- D1
- Pages
- D37-D42
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W4246954632
- Cited by
- 632
- References
- 3
- FWCI
- 35.51
- Type
- journal article
- Language
- en
- Open access
- gold
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Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
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Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
