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Cited by 66Light effects on plantsPlant Molecular Biology ResearchPlant Parasitism and Resistance

Molecular Genetic Analysis of Phototropism in Arabidopsis

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Sakai, T., Haga, K.·2012·Plant and Cell Physiology
DOI 10.1093/pcp/pcs111PMC PMC3439871
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Abstract

Plant life is strongly dependent on the environment, and plants regulate their growth and development in response to many different environmental stimuli. One of the regulatory mechanisms involved in these responses is phototropism, which allows plants to change their growth direction in response to the location of the light source. Since the study of phototropism by Darwin, many physiological studies of this phenomenon have been published. Recently, molecular genetic analyses of Arabidopsis have begun to shed light on the molecular mechanisms underlying this response system, including phototropin blue light photoreceptors, phototropin signaling components, auxin transporters, auxin action mechanisms and others. This review highlights some of the recent progress that has been made in further elucidating the phototropic response, with particular emphasis on mutant phenotypes.

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  • Many light-bending mutants exhibit defects in auxin-related signaling, suggesting that auxin transport is vital for phototropism.

    “Many light-bending mutants exhibit defects in auxin-related signaling (Sakai et al., 2012), suggesting that auxin transport is vital for phototropism.”

    From The action of enhancing weak light capture via phototropic growth and chloroplast movement in plants (2022) · cites this paper as Sakai et al., 2012

  • No phosphorylation sites associated with the first positive phototropism have been identified under low-fluence blue light.

    “However, no phosphorylation sites associated with the first positive phototropism have been identified under low-fluence blue light (Sakai and Haga, 2012; Christie and Murphy, 2013).”

    From The action of enhancing weak light capture via phototropic growth and chloroplast movement in plants (2022) · cites this paper as Sakai and Haga, 2012

    The Photoreceptors > Phototropins section identifies phot1 Ser851 as important for phototropic responses, while the Phototropin Signaling Components > NPH3 section says three identified sites are not required for a response under low-intensity blue light. Neither passage addresses whether any phosphorylation sites had been identified specifically for first positive phototropism under low-fluence blue light; searches for that combination found no such statement. (LLM, conf=0.70)

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  1. Ahmad M Jarillo JA Smirnova O Cashmore AR The CRY1 blue light photoreceptor of Arabidopsis interacts with phytochrome A in vitro Mol. Cell 1998 1 939 948 9651577
  2. Babourina O Newman I Shabala S Blue light-induced kinetics of H+ and Ca2+ fluxes in etiolated wild-type and phototropin-mutant Arabidopsis seedlings Proc. Natl Acad. Sci. USA 2002 99 2433 2438 11854534 PMC122382
  3. Baum G Long JC Jenkins GI Trewavas AJ Stimulation of the blue light phototropic receptor NPH1 causes a transient increase in cytosolic Ca2+ Proc. Natl Acad. Sci. USA 1999 96 13554 13559 10557359 PMC23986
  4. Benjamins R Ampudia CS Hooykaas PJ Offringa R PINOID-mediated signaling involves calcium-binding proteins Plant Physiol. 2003 132 1623 1630 12857841 PMC167099
  5. Benjamins R Malenica N Luschnig C Regulating the regulator: the control of auxin transport BioEssays 2005 27 1246 1255 16299756
  6. Blakeslee JJ Bandyopadhyay A Lee OR Mravec J Titapiwatanakun B Sauer M Interactions among PIN-FORMED and P-glycoprotein auxin transporters in Arabidopsis Plant Cell 2007 19 131 147 17237354 PMC1820964
  7. Blakeslee JJ Bandyopadhyay A Peer WA Makam SN Murphy AS Relocalization of the PIN1 auxin efflux facilitator plays a role in phototropic responses Plant Physiol. 2004 134 28 31 14730061 PMC1540349
  8. Blakeslee JJ Peer WA Murphy AS Auxin transport Curr. Opin. Plant Biol. 2005 8 494 500 16054428
  9. Boccalandro HE De Simone SN Bergmann-Honsberger A Schepens I Fankhauser C Casal JJ PHYTOCHROME KINASE SUBSTRATE1 regulates root phototropism and gravitropism Plant Physiol. 2008 146 108 115 18024556 PMC2230574
  10. Bögre L Ökrész L Henriques R Anthony RG Growth signalling pathways in Arabidopsis and the AGC protein kinases Trends Plant Sci. 2003 8 424 431 13678909
  11. Briggs WR Beck CF Cashmore AR Christie JM Hughes J Jarillo JA The phototropin family of photoreceptors Plant Cell 2001 13 993 997 11424903 PMC1464709
  12. Casal JJ Phytochromes, cryptochromes, phototropin: photoreceptor interactions in plants Photochem. Photobiol. 2000 71 1 11 10649883
  13. Chen JG Ullah H Young JC Sussman MR Jones AM ABP1 is required for organized cell elongation and division in Arabidopsis embryogenesis Genes Dev. 2001 15 902 911 11297513 PMC312669
  14. Chen M Chory J Fankhauser C Light signal transduction in higher plants Annu. Rev. Genet. 2004 38 87 117 15568973
  15. Cheng Y Qin G Dai X Zhao Y NPY1, a BTB-NPH3-like protein, plays a critical role in auxin-regulated organogenesis in Arabidopsis Proc. Natl Acad. Sci. USA 2007 104 18825 18829 18000043 PMC2141861
  16. Cheng Y Qin G Dai X Zhao Y NPY genes and AGC kinases define two key steps in auxin-mediated organogenesis in Arabidopsis Proc. Natl Acad. Sci. USA 2008 105 21017 21022 19075219 PMC2634868
  17. Christie JM Phototropin blue-light receptors Annu. Rev. Plant Biol. 2007 58 21 45 17067285
  18. Christie JM Reymond P Powell GK Bernasconi P Raibekas AA Liscum E Arabidopsis NPH1: a flavoprotein with the properties of a photoreceptor for phototropism Science 1998 282 1698 1701 9831559
  19. Christie JM Yang H Richter GL Sullivan S Thomson CE Lin J phot1 inhibition of ABCB19 primes lateral auxin fluxes in the shoot apex required for phototropism PLoS Biol. 2011 9 e1001076 21666806 PMC3110179
  20. Colón-Carmona A Chen DL Yeh KC Abel S Aux/IAA proteins are phosphorylated by phytochrome in vitro Plant Physiol. 2000 124 1728 1738 11115889 PMC59870
  21. Cosgrove DJ Loosening of plant cell walls by expansins Nature 2000 407 321 326 11014181
  22. de Carbonnel M Davis P Roelfsema MR Inoue S Schepens I Lariguet P The Arabidopsis PHYTOCHROME KINASE SUBSTRATE2 protein is a phototropin signaling element that regulates leaf flattening and leaf positioning Plant Physiol. 2010 152 1391 1405 20071603 PMC2832238
  23. del Pozo JC Dharmasiri S Hellmann H Walker L Gray WM Estelle M AXR1-ECR1-dependent conjugation of RUB1 to the Arabidopsis Cullin AtCUL1 is required for auxin response Plant Cell 2002 14 421 433 11884684 PMC152922
  24. Devlin PF Yanovsky MJ Kay SA A genomic analysis of the shade avoidance response in Arabidopsis Plant Physiol. 2003 133 1617 1629 14645734 PMC300718
  25. Dharmasiri N Dharmasiri S Weijers D Karunarathna N Jurgens G Estelle M AXL and AXR1 have redundant functions in RUB conjugation and growth and development in Arabidopsis Plant J. 2007 52 114 123 17655650
  26. Dharmasiri N Dharmasiri S Weijers D Lechner E Yamada M Hobbie L Plant development is regulated by a family of auxin receptor F box proteins Dev. Cell 2005 9 109 119 15992545
  27. Dhonukshe P Huang F Galván-Ampudia CS Mähönen AP Kleine-Vehn J Xu J Plasma membrane-bound AGC3 kinases phosphorylate PIN auxin carriers at TPRXS(N/S) motifs to direct apical PIN recycling Development 2010 137 3245 3255 20823065
  28. Ding Z Galván-Ampudia CS Demarsy E Łangowski L Kleine-Vehn J Fan Y Light-mediated polarization of the PIN3 auxin transporter for the phototropic response in Arabidopsis Nat. Cell Biol. 2011 13 447 452 21394084
  29. Donaldson JG Jackson CL Regulators and effectors of the ARF GTPases Curr. Opin. Cell Biol. 2000 12 475 482 10873831
  30. Effendi Y Rietz S Fischer U Scherer GF The heterozygous abp1/ABP1 insertional mutant has defects in functions requiring polar auxin transport and in regulation of early auxin-regulated genes Plant J. 2011 65 282 294 21223392
  31. Esmon CA Tinsley AG Ljung K Sandberg G Hearne LB Liscum E A gradient of auxin and auxin-dependent transcription precedes tropic growth responses Proc. Natl Acad. Sci. USA 2006 103 236 241 16371470 PMC1324985
  32. Fankhauser C Yeh K-C Lagarias JC Zhang H Elich TD Chory J PKS1, a substrate phosphorylated by phytochrome that modulates light signaling in Arabidopsis Science 1999 284 1539 1541 10348744
  33. Figueroa P Gusmaroli G Serino G Habashi J Ma L Shen Y Arabidopsis has two redundant Cullin3 proteins that are essential for embryo development and that interact with RBX1 and BTB proteins to form multisubunit E3 ubiquitin ligase complexes in vivo Plant Cell 2005 17 1180 1195 15772280 PMC1087995
  34. Friml J Vieten A Sauer M Schwarz H Hamann T Offringa R Efflux-dependent auxin gradients establish the apical–basal axis of Arabidopsis Nature 2003 426 147 153 14614497
  35. Friml J Wiśniewska J Benková E Mendgen K Palme K Lateral relocation of auxin efflux regulator PIN3 mediates tropism in Arabidopsis Nature 2002 415 806 809 11845211
  36. Friml J Yang X Michniewicz M Weijers D Quint A Tietz O A PINOID-dependent binary switch in apical–basal PIN polar targeting directs auxin efflux Science 2004 306 862 865 15514156
  37. Gallego-Bartolomé J Kami C Fankhauser C Alabadí D Blázquez MA A hormonal regulatory module that provides flexibility to tropic responses Plant Physiol. 2011 156 1819 1825 21543725 PMC3149964
  38. Galván-Ampudia CS Offringa R Plant evolution: AGC kinases tell the auxin tale Trends Plant Sci. 2007 12 541 547 18024140
  39. Geldner N Anders N Wolters H Keicher J Kornberger W Muller P The Arabidopsis GNOM ARF-GEF mediates endosomal recycling, auxin transport, and auxin-dependent plant growth Cell 2003 112 219 230 12553910
  40. Geldner N Richter S Vieten A Marquardt S Torres-Ruiz RA Mayer U Partial loss-of-function alleles reveal a role for GNOM in auxin transport-related, post-embryonic development of Arabidopsis Development 2004 131 389 400 14681187
  41. Greenham K Santner A Castillejo C Mooney S Sairanen I Ljung K The AFB4 auxin receptor is a negative regulator of auxin signaling in seedlings Curr. Biol. 2011 21 520 525 21396817 PMC4295904
  42. Guilfoyle TJ Hagen G Auxin response factors Curr. Opin. Plant Biol. 2007 10 453 460 17900969
  43. Haga K Takano M Neumann R Iino M The rice COLEOPTILE PHOTOTROPISM1 gene encoding an ortholog of Arabidopsis NPH3 is required for phototropism of coleoptiles and lateral translocation of auxin Plant Cell 2005 17 103 115 15598797 PMC544493
  44. Hangarter RP Gravity, light and plant form Plant Cell Environ. 1997 20 796 800 11541207
  45. Harada A Sakai T Okada K Phot1 and phot2 mediate blue light-induced transient increases in cytosolic Ca2+ differently in Arabidopsis leaves Proc. Natl Acad. Sci. USA 2003 100 8583 8588 12821778 PMC166272
  46. Harada A Shimazaki K Phototropins and blue light-dependent calcium signaling in higher plants Photochem. Photobiol. 2007 83 102 111 16906793
  47. Harper RM Stowe-Evans EL Luesse DR Muto H Tatematsu K Watahiki MK The NPH4 locus encodes the auxin response factor ARF7, a conditional regulator of differential growth in aerial Arabidopsis tissue Plant Cell 2000 12 757 770 10810148 PMC139925
  48. Hoecker U Toledo-Ortiz G Bender J Quail PH The photomorphogenesis-related mutant red1 is defective in CYP83B1, a red light-induced gene encoding a cytochrome P450 required for normal auxin homeostasis Planta 2004 219 195 200 14963708
  49. Holland JJ Roberts D Liscum E Understanding phototropism: from Darwin to today J. Exp. Bot. 2009 60 1969 1978 19357428
  50. Hotton SK Callis J Regulation of cullin RING ligases Annu. Rev. Plant Biol. 2008 59 467 489 18444905
  51. Huala E Oeller PW Liscum E Han IS Larsen E Briggs WR Arabidopsis NPH1: a protein kinase with a putative redox-sensing domain Science 1997 278 2120 2123 9405347
  52. Huang F Zago MK Abas L van Marion A Galván-Ampudia CS Offringa R Phosphorylation of conserved PIN motifs directs Arabidopsis PIN1 polarity and auxin transport Plant Cell 2010 22 1129 1142 20407025 PMC2879764
  53. Iino M Häder D-P Lebert M Phototropism in higher plants Photomovement 2001 Amsterdam Elsevier Science B.V. 659 811
  54. Iino M Toward understanding the ecological functions of tropisms: interactions among and effects of light on tropisms Curr. Opin. Plant Biol. 2006 9 89 93 16338162
  55. Inada S Ohgishi M Mayama T Okada K Sakai T RPT2 is a signal transducer involved in phototropic response and stomatal opening by association with phototropin 1 in Arabidopsis thaliana Plant Cell 2004 16 887 896 15031408 PMC412863
  56. Inoue S Kinoshita T Matsumoto M Nakayama KI Doi M Shimazaki K Blue light-induced autophosphorylation of phototropin is a primary step for signaling Proc. Natl Acad. Sci. USA 2008 105 5626 5631 18378899 PMC2291087
  57. Janoudi AK Gordon WR Wagner D Quail P Poff KL Multiple phytochromes are involved in red-light-induced enhancement of first-positive phototropism in Arabidopsis thaliana Plant Physiol. 1997a 113 975 979 9085579 PMC158218
  58. Janoudi AK Konjević R Apel P Poff KL Time threshold for second positive phototropism is decreased by a preirradiation with red light Plant Physiol. 1992 99 1422 1425 11537887 PMC1080642
  59. Jensen PJ Hangarter RP Estelle M Auxin transport is required for hypocotyl elongation in light-grown but not dark-grown Arabidopsis Plant Physiol. 1998 116 455 462 9489005 PMC35101
  60. Jiao Y Lau OS Deng XW Light-regulated transcriptional networks in higher plants Nat. Rev. Genet. 2007 8 217 230 17304247
  61. Kagawa T Sakai T Suetsugu N Oikawa K Ishiguro S Kato T Arabidopsis NPL1: a phototropin homolog controlling the chloroplast high-light avoidance response Science 2001 291 2138 2141 11251116
  62. Kaiserli E Sullivan S Jones MA Feeney KA Christie JM Domain swapping to assess the mechanistic basis of Arabidopsis phototropin 1 receptor kinase activation and endocytosis by blue light Plant Cell 2009 21 3226 3244 19880798 PMC2782288
  63. Kang B Grancher N Koyffmann V Lardemer D Burney S Ahmad M Multiple interactions between cryptochrome and phototropin blue-light signalling pathways in Arabidopsis thaliana Planta 2008 227 1091 1099 18183416
  64. Khurana JP Poff KL Mutants of Arabidopsis thaliana with altered phototropism Planta 1989 178 400 406 11537724
  65. Kim K Shin J Lee SH Kweon HS Maloof JN Choi G Phytochromes inhibit hypocotyl negative gravitropism by regulating the development of endodermal amyloplasts through phytochrome-interacting factors Proc. Natl Acad. Sci. USA 2011 108 1729 1734 21220341 PMC3029704
  66. Kiss JZ Mullen JL Correll MJ Hangarter RP Phytochromes A and B mediate red-light-induced positive phototropism in roots Plant Physiol. 2003 131 1411 1417 12644690 PMC166900
  67. Knauer T Dümmer M Landgraf F Forreiter C A negative effector of blue light-induced and gravitropic bending in Arabidopsis Plant Physiol. 2011 156 439 447 21367967 PMC3091041
  68. Lalanne E Michaelidis C Moore JM Gagliano W Johnson A Patel R Analysis of transposon insertion mutants highlights the diversity of mechanisms underlying male progamic development in Arabidopsis Genetics 2004 167 1975 1986 15342534 PMC1471024
  69. Lariguet P Boccalandro HE Alonso JM Ecker JR Chory J Casal JJ A growth regulatory loop that provides homeostasis to phytochrome A signaling Plant Cell 2003 15 2966 2978 14615593 PMC282841
  70. Lariguet P Fankhauser C Hypocotyl growth orientation in blue light is determined by phytochrome A inhibition of gravitropism and phototropin promotion of phototropism Plant J. 2004 40 826 834 15546364
  71. Lariguet P Schepens I Hodgson D Pedmale UV Trevisan M Kami C PHYTOCHROME KINASE SUBSTRATE 1 is a phototropin 1 binding protein required for phototropism Proc. Natl Acad. Sci. USA 2006 103 10134 10139 16777956 PMC1502518
  72. Lascève G Leymarie J Olney MA Liscum E Christie JM Vavasseur A Arabidopsis contains at least four independent blue-light-activated signal transduction pathways Plant Physiol. 1999 120 605 614 10364413 PMC59300
  73. Li Y Dai X Cheng Y Zhao Y NPY genes play an essential role in root gravitropic responses in Arabidopsis Mol. Plant 2011 4 171 179 20833732 PMC3026118
  74. Li J Dai X Zhao Y A role for auxin response factor 19 in auxin and ethylene signaling in Arabidopsis Plant Physiol. 2006 140 899 908 16461383 PMC1400570
  75. Lincoln C Britton JH Estelle M Growth and development of the axr1 mutants of Arabidopsis Plant Cell 1990 2 1071 1080 1983791 PMC159955
  76. Liscum E Briggs WR Mutations in the NPH1 locus of Arabidopsis disrupt the perception of phototropic stimuli Plant Cell 1995 7 473 485 7773019 PMC160797
  77. Martinoia E Klein M Geisler M Bovet L Forestier C Kolukisaoglu U Multifunctionality of plant ABC transporters—more than just detoxifiers Planta 2002 214 345 355 11855639
  78. Mashiguchi K Tanaka K Sakai T Sugawara S Kawaide H Natsume M The main auxin biosynthesis pathway in Arabidopsis Proc. Natl Acad. Sci. USA 2011 108 18512 18517 22025724 PMC3215075
  79. Michniewicz M Zago MK Abas L Weijers D Schweighofer A Meskiene I Antagonistic regulation of PIN phosphorylation by PP2A and PINOID directs auxin flux Cell 2007 130 1044 1056 17889649
  80. Millar KD Kumar P Correll MJ Mullen JL Hangarter RP Edelmann RE A novel phototropic response to red light is revealed in microgravity New Phytol. 2010 186 648 656 20298479
  81. Miyazawa Y Takahashi A Kobayashi A Kaneyasu T Fujii N Takahashi H GNOM-mediated vesicular trafficking plays an essential role in hydrotropism of Arabidopsis roots Plant Physiol. 2009 149 835 840 19052151 PMC2633850
  82. Mockaitis K Estelle M Auxin receptors and plant development: a new signaling paradigm Annu. Rev. Cell Dev. Biol. 2008 24 55 80 18631113
  83. Möller B Schenck D Lüthen H Exploring the link between auxin receptors, rapid cell elongation and organ tropisms Plant Signal. Behav. 2010 5 601 603 PMC7080487 21228634
  84. Mravec J Skůpa P Bailly A Hoyerová K Křeček P Bielach A Subcellular homeostasis of phytohormone auxin is mediated by the ER-localized PIN5 transporter Nature 2009 459 1136 1140 19506555
  85. Muday GK Brady SR Argueso C Deruère J Kieber JJ DeLong A RCN1-regulated phosphatase activity and EIN2 modulate hypocotyl gravitropism by a mechanism that does not require ethylene signaling Plant Physiol. 2006 141 1617 1629 16798939 PMC1533932
  86. Nagashima A Suzuki G Uehara Y Saji K Furukawa T Koshiba T Phytochromes and cryptochromes regulate the differential growth of Arabidopsis hypocotyls in both a PGP19-dependent and a PGP19-independent manner Plant J. 2008a 53 516 529 18086281
  87. Nagashima A Uehara Y Sakai T The ABC subfamily B auxin transporter AtABCB19 is involved in the inhibitory effects of N-1-naphthyphthalamic acid on the phototropic and gravitropic responses of Arabidopsis hypocotyls Plant Cell Physiol. 2008b 49 1250 1255 18556728
  88. Noh B Bandyopadhyay A Peer WA Spalding EP Murphy AS Enhanced gravi- and phototropism in plant mdr mutants mislocalizing the auxin efflux protein PIN1 Nature 2003 423 999 1002 12827205
  89. Noh B Murphy AS Spalding EP Multidrug resistance-like genes of Arabidopsis required for auxin transport and auxin-mediated development Plant Cell 2001 13 2441 2454 11701880 PMC139463
  90. Ohgishi M Saji K Okada K Sakai T Functional analysis of each blue light receptor, cry1, cry2, phot1, and phot2, by using combinatorial multiple mutants in Arabidopsis Proc. Natl Acad. Sci. USA 2004 101 2223 2228 14982991 PMC356932
  91. Okada K Shimura Y Meyerowitz EM Somerville CR Modulation of root growth by physical stimuli Arabidopsis 1994 Cold Spring Harbor, NY Cold Spring Harbor Laboratory Press 665 684
  92. Okushima Y Overvoorde PJ Arima K Alonso JM Chan A Chang C Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19 Plant Cell 2005 17 444 463 15659631 PMC548818
  93. Parks BM Quail PH Hangarter RP Phytochrome A regulates red-light induction of phototropic enhancement in Arabidopsis Plant Physiol. 1996 110 155 162 8587979 PMC157704
  94. Parry G Calderon-Villalobos LI Prigge M Dharmasiri PS Itoh H Lechner E Complex regulation of the TIR1/AFB family of auxin receptors Proc. Natl Acad. Sci. USA 2009 106 22540 22545 20018756 PMC2799741
  95. Pedmale UV Liscum E Regulation of phototropic signaling in Arabidopsis via phosphorylation state changes in the phototropin 1-interacting protein NPH3 J. Biol. Chem. 2007 282 19992 20001 17493935
  96. Petricka JJ Clay NK Nelson TM Vein patterning screens and the defectively organized tributaries mutants in Arabidopsis thaliana Plant J. 2008 56 251 263 18643975
  97. Poff KL Janoudi A-K Rosen ES Orbović V Meyerowitz EM Somerville CR The physiology of tropisms Arabidopsis 1994 Cold Spring Harbor, NY Cold Spring Harbor Laboratory Press 639 664
  98. Rakusová H Gallego-Bartolomé J Vanstraelen M Robert HS Alabadi D Blázquez MA Polarization of PIN3-dependent auxin transport for hypocotyl gravitropic response in Arabidopsis thaliana Plant J. 2011 67 817 826 21569134
  99. Robert HS Friml J Auxin and other signals on the move in plants Nat. Chem. Biol. 2009 5 325 332 19377459
  100. Robert HS Offringa R Regulation of auxin transport polarity by AGC kinases Curr. Opin. Plant Biol. 2008 11 495 502 18640868
  101. Robert S Kleine-Vehn J Barbez E Sauer M Paciorek T Baster P ABP1 mediates auxin inhibition of clathrin-dependent endocytosis in Arabidopsis Cell 2010 143 111 121 20887896 PMC3503507
  102. Robson PR Smith H Genetic and transgenic evidence that phytochromes A and B act to modulate the gravitropic orientation of Arabidopsis thaliana hypocotyls Plant Physiol. 1996 110 211 216 11536725 PMC157711
  103. Sakai T Wada M Shimazaki K Iino M NPH3 and RPT2: signal transducers in phototropin signaling pathways Light Sensing in Plants 2005 Tokyo Springer-Verlag 179 184
  104. Sakai T Kagawa T Kasahara M Swartz TE Christie JM Briggs WR Arabidopsis nph1 and npl1: blue light receptors that mediate both phototropism and chloroplast relocation Proc. Natl Acad. Sci. USA 2001 98 6969 6974 11371609 PMC34462
  105. Sakai T Mochizuki S Haga K Uehara Y Suzuki A Harada A The WAVY GROWTH 3 E3 ligase family controls the gravitropic response in Arabidopsis roots Plant J. 2012 70 303 314 22122664
  106. Sakai T Wada T Ishiguro S Okada K RPT2. A signal transducer of the phototropic response in Arabidopsis Plant Cell 2000 12 225 236 10662859 PMC139760
  107. Salomon M Zacherl M Rüdiger W Asymmetric, blue light-dependent phosphorylation of a 116-kilodalton plasma membrane protein can be correlated with the first- and second-positive phototropic curvature of oat coleoptiles Plant Physiol. 1997b 115 485 491 11536817 PMC158506
  108. Santner AA Watson JC The WAG1 and WAG2 protein kinases negatively regulate root waving in Arabidopsis Plant J. 2006 45 752 764 16460509
  109. Sauer M Kleine-Vehn J AUXIN BINDING PROTEIN1: the outsider Plant Cell 2011 23 2033 2043 21719690 PMC3160040
  110. Schenck D Christian M Jones A Lüthen H Rapid auxin-induced cell expansion and gene expression: a four-decade-old question revisited Plant Physiol. 2010 152 1183 1185 20071604 PMC2832252
  111. Scherer GFE AUXIN-BINDING-PROTEIN1, the second auxin receptor: what is the significance of a two-receptor concept in plant signal transduction? J Exp. Bot. 2011 62 3339 3357 21733909
  112. Schwechheimer C Understanding gibberellic acid signaling—are we there yet? Curr. Opin. Plant Biol. 2008 11 9 15 18077204
  113. Shin R Burch AY Huppert KA Tiwari SB Murphy AS Guilfoyle TJ The Arabidopsis transcription factor MYB77 modulates auxin signal transduction Plant Cell 2007 19 2440 2453 17675404 PMC2002618
  114. Steinitz B Ren Z Poff KL Blue and green light-induced phototropism in Arabidopsis thaliana and Lactuca sativa L. seedlings Plant Physiol. 1985 77 248 251 16664021 PMC1064494
  115. Steinmann T Geldner N Grebe M Mangold S Jackson CL Paris S Coordinated polar localization of auxin efflux carrier PIN1 by GNOM ARF GEF Science 1999 286 316 318 10514379
  116. Stepanova AN Yun J Robles LM Novak O He W Guo H The Arabidopsis YUCCA1 flavin monooxygenase functions in the indole-3-pyruvic acid branch of auxin biosynthesis Plant Cell 2011 23 3961 3973 22108406 PMC3246335
  117. Stoelzle S Kagawa T Wada M Hedrich R Dietrich P Blue light activates calcium-permeable channels in Arabidopsis mesophyll cells via the phototropin signaling pathway Proc. Natl Acad. Sci. USA 2003 100 1456 1461 12540824 PMC298794
  118. Stone BB Stowe-Evans EL Harper RM Celaya RB Ljung K Sandberg G Disruptions in AUX1-dependent auxin influx alter hypocotyl phototropism in Arabidopsis Mol. Plant 2008 1 129 144 20031920
  119. Stowe-Evans EL Luesse DR Liscum E The enhancement of phototropin-induced phototropic curvature in Arabidopsis occurs via a photoreversible phytochrome A-dependent modulation of auxin responsiveness Plant Physiol. 2001 126 826 834 11402210 PMC111172
  120. Sullivan S Thomson CE Kaiserli E Christie JM Interaction specificity of Arabidopsis 14-3-3 proteins with phototropin receptor kinases FEBS Lett. 2009 583 2187 2193 19524572
  121. Sullivan S Thomson CE Lamont DJ Jones MA Christie JM In vivo phosphorylation site mapping and functional characterization of Arabidopsis phototropin 1 Mol. Plant 2008 1 178 194 20031924
  122. Tanaka H Dhonukshe P Brewer PB Friml J Spatiotemporal asymmetric auxin distribution: a means to coordinate plant development Cell Mol. Life Sci. 2006 63 2738 2754 17013565 PMC11136431
  123. Thomann A Brukhin V Dieterle M Gheyeselinck J Vantard M Grossniklaus U Arabidopsis CUL3A and CUL3B genes are essential for normal embryogenesis Plant J. 2005 43 437 448 16045478
  124. Titapiwatanakun B Blakeslee JJ Bandyopadhyay A Yang H Mravec J Sauer M ABCB19/PGP19 stabilises PIN1 in membrane microdomains in Arabidopsis Plant J. 2009 57 27 44 18774968
  125. Tromas A Paponov I Perrot-Rechenmann C AUXIN BINDING PROTEIN 1: functional and evolutionary aspects Trends Plant Sci. 2010 15 436 446 20605513
  126. Tseng TS Briggs WR The Arabidopsis rcn1-1 mutation impairs dephosphorylation of phot2, resulting in enhanced blue light responses Plant Cell 2010 22 392 402 20139163 PMC2845423
  127. Ulmasov T Hagen G Guilfoyle TJ Dimerization and DNA binding of auxin response factors Plant J. 1999 19 309 319 10476078
  128. Vitha S Zhao L Sack FD Interaction of root gravitropism and phototropism in Arabidopsis wild-type and starchless mutants Plant Physiol. 2000 122 453 462 10677438 PMC58882
  129. Wang H Signaling mechanisms of higher plant photoreceptors: a structure–function perspective Curr. Top. Dev. Biol. 2005 68 227 261 16125001
  130. Watahiki MK Tatematsu K Fujihira K Yamamoto M Yamamoto KT The MSG1 and AXR1 genes of Arabidopsis are likely to act independently in growth–curvature responses of hypocotyls Planta 1999 207 362 369 9951732
  131. Whippo CW Hangarter RP Second positive phototropism results from coordinated co-action of the phototropins and cryptochromes Plant Physiol. 2003 132 1499 1507 12857830 PMC167088
  132. Whippo CW Hangarter RP A brassinosteroid-hypersensitive mutant of BAK1 indicates that a convergence of photomorphogenic and hormonal signaling modulates phototropism Plant Physiol. 2005 139 448 457 16126860 PMC1203393
  133. Wilmoth JC Wang S Tiwari SB Joshi AD Hagen G Guilfoyle TJ NPH4/ARF7 and ARF19 promote leaf expansion and auxin-induced lateral root formation Plant J. 2005 43 118 130 15960621
  134. Won C Shen X Mashiguchi K Zheng Z Dai X Cheng Y Conversion of tryptophan to indole-3-acetic acid by TRYPTOPHAN AMINOTRANSFERASES OF ARABIDOPSIS and YUCCAs in Arabidopsis Proc. Natl Acad. Sci. USA 2011 108 18518 18523 22025721 PMC3215067
  135. Yu X Liu H Klejnot J Lin C The cryptochrome blue light receptors Arabidopsis Book 2010 8 e0135 21841916 PMC3155252
  136. Žádníková P Petrášek J Marhavý P Raz V Vandenbussche F Ding Z Role of PIN-mediated auxin efflux in apical hook development of Arabidopsis thaliana Development 2010 137 607 617 20110326
  137. Zhao X Yu X Foo E Symons GM Lopez J Bendehakkalu KT A study of gibberellin homeostasis and cryptochrome-mediated blue light inhibition of hypocotyl elongation Plant Physiol. 2007 145 106 118 17644628 PMC1976579

Cited by

Sorted by citations

Authors
Sakai, T., & Haga, K.
Affiliations
Niigata University (JP)
Corresponding author
Sakai, T.
ORCID
Venue
Plant and Cell Physiology
Publisher
Oxford University Press (OUP)
Published
2012-08-03
Volume
53
Issue
9
Pages
1517-1534
ISSN
  • 0032-0781 (ISSN-L)
  • 1471-9053
DOI
10.1093/pcp/pcs111
PMC
PMC3439871
OpenAlex
W2107644740
Cited by
66
References
12
Citations by year
2026: 1 · 2025: 1 · 2024: 5 · 2023: 6 · 2022: 1 · 2020: 1 · 2019: 4 · 2018: 4 · 2017: 6 · 2016: 9 · 2015: 6 · 2014: 14 · 2013: 5 · 2012: 3
FWCI
0.96
Type
journal article
Language
en
Open access
Licence
cc-by-nc
Locations
  • Plant and Cell Physiology (publishedVersion, cc-by-nc)
  • Europe PMC (PubMed Central) (publishedVersion, cc-by-nc)
  • PubMed Central (publishedVersion, cc-by-nc)
  • PubMed (publishedVersion)
Funders
Japan Society for the Promotion of Science (22570058, 24657027)
Topics
  • Life Sciences › Agricultural and Biological Sciences › Plant Science › Light effects on plants
  • Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Molecular Biology Research
  • Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Parasitism and Resistance
Keywords
phototropism, Arabidopsis thaliana, phototropin, blue-light photoreceptor, auxin transporters, auxin action, mutant phenotypes, light signaling, plant growth response
MeSH terms
Indoleacetic Acids, Signal Transduction, Arabidopsis, Phototropism, Arabidopsis Proteins, Photoreceptors, Plant

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