Posterior summarization in Bayesian phylogenetics using tracer 1.7
Rambaut, Andrew, Drummond, Alexei J, Xie, Dong, Baele, Guy, Suchard, Marc A·2018·Systematic Biology
Cited by (1,017)
Items 101–200 of 1,017
- Prolonged morphological expansion of spiny-rayed fishes following the end-CretaceousAva Ghezelayagh, Richard C. Harrington, Edward D. Burress, Matthew A. Campbell, Janet C. Buckner, Prosanta Chakrabarty, Jessica R. Glass, W. Tyler McCraney, Peter J. Unmack, Christine E. Thacker et al. · 2022 · Nature Ecology & Evolution
- The coincidence of ecological opportunity with hybridization explains rapid adaptive radiation in Lake Mweru cichlid fishesJoana I. Meier, Rike Bahati Stelkens, Domino A. Joyce, Salome Mwaiko, Numel Phiri, Ulrich K. Schliewen, Oliver M. Selz, Catherine E. Wagner, Cyprian Katongo, Ole Seehausen C D · 2019 · Nature Communications
- The fossil record of spiders revisited: implications for calibrating trees and evidence for a major faunal turnover since the MesozoicIvan L. F. Magalhães, Guilherme H. F. Azevedo, Peter Michalik, Martín Javier Ramírez · 2019 · Biological reviews/Biological reviews of the Cambridge Philosophical Society
- Context-specific emergence and growth of the SARS-CoV-2 Delta variantJohn T. McCrone, Verity Hill, Sumali Bajaj, Rosario Evans Pena, Ben C. Lambert, Rhys P. D. Inward, Samir Bhatt, Erik Volz, Christopher Ruis, Simon Dellicour et al. · 2022 · Nature
- Early introductions and transmission of SARS-CoV-2 variant B.1.1.7 in the United StatesTara Alpert, Anderson Fernandes Brito, Erica Lasek‐Nesselquist, Jessica E. Rothman, Andrew L. Valesano, Matthew J. MacKay, Mary E. Petrone, Mallery I. Breban, Anne E. Watkins, Chantal B. F. Vogels et al. · 2021 · Cell
- COVID-19 pandemic interventions reshaped the global dispersal of seasonal influenza virusesZhiyuan Chen, Joseph L.-H. Tsui, Bernardo Gutiérrez, Simon Busch‐Moreno, Louis du Plessis, Xiaowei Deng, Jun Cai, Sumali Bajaj, Marc A. Suchard, Oliver G. Pybus et al. · 2024 · Science
- Allele Phasing Greatly Improves the Phylogenetic Utility of Ultraconserved ElementsTobias Andermann, Alexandre Mendes Fernandes, Urban Olsson, Mats Töpel, Bernard E. Pfeil, Bengt Oxelman, Alexandre Luis Padovan Aleixo, Brant C. Faircloth, Alexandre Antonelli · 2018 · Systematic Biology
- Speciation through chromosomal fusion and fission in LepidopteraJurriaan M. de Vos, Hannah Augustijnen, Livio Bätscher, Kay Lucek · 2020 · Philosophical Transactions of the Royal Society B Biological Sciences
- Epidemiological hypothesis testing using a phylogeographic and phylodynamic frameworkSimon Dellicour, Sébastian Lequime, Bram Vrancken, Mandev S. Gill, Paul Bastide, Karthik Gangavarapu, Nathaniel L. Matteson, Yi Tan, Louis du Plessis, Alexander A. Fisher et al. · 2020 · Nature Communications
- A complete time-calibrated multi-gene phylogeny of the European butterfliesMartin Wiemers, Nicolas Chazot, Christopher West Wheat, Oliver Schweiger, Niklas Wahlberg · 2020 · ZooKeys
- Genomic monitoring of SARS-CoV-2 uncovers an Nsp1 deletion variant that modulates type I interferon responseJingwen Lin, Chao Tang, Han-cheng Wei, Baowen Du, Chuan Chen, Minjin Wang, Yongzhao Zhou, Mingxia Yu, Lu Cheng, Suvi H. Kuivanen et al. · 2021 · Cell Host & Microbe
- Yellow Fever Virus Reemergence and Spread in Southeast Brazil, 2016–2019Marta Giovanetti, Marcos César Lima de Mendonça, Vagner Fonseca, Maria Angélica Mares-Guia, Allison de Araújo Fabri, Joilson Xavier, Jaqueline Góes de Jesus, Tiago Gräf, Cintia Damasceno dos Santos Rodrigues, Carolina Cardoso dos Santos et al. · 2019 · Journal of Virology
- Evolution and host-specific adaptation ofPseudomonas aeruginosaAaron Weimann, Adam M. Dinan, Christopher Ruis, Audrey Bernut, Stéphane Pont, Karen Brown, Judy Y. Ryan, L. Santos, Louise Ellison, E.-F. Ukor et al. · 2024 · Science
- Mitochondrial Genomics Reveals Shared Phylogeographic Patterns and Demographic History among Three Periodical Cicada Species GroupsZhenyong Du, Hiroki Hasegawa, John R. Cooley, Chris M. Simon, Jin Yoshimura, Wanzhi Cai, Teiji Sota, Hu Li · 2019 · Molecular Biology and Evolution
- Interspecific hybridization facilitates niche adaptation in beer yeastBrigida Gallone, Jan Steensels, Stijn Mertens, Maria C. Dzialo, Jonathan Gordon, Ruben Wauters, Florian A. Theßeling, Francesca Bellinazzo, Veerle Saels, Beatriz Herrera‐Malaver et al. · 2019 · Nature Ecology & Evolution
- Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptationsKarcher, Nicolai, Pasolli, Edoardo, Asnicar, Francesco, Huang, Kun D., Tett, Adrian, Manara, Serena, Armanini, Federica, Bain, Debbie, Duncan, Sylvia H., Louis, Petra et al. · 2020 · Genome Biology
- Meta-analysis of northeast Atlantic marine taxa shows contrasting phylogeographic patterns following post-LGM expansionsTom L. Jenkins, Rita Castilho, Jamie R. Stevens · 2018 · PeerJ
- Repeated species radiations in the recent evolution of the key marine phytoplankton lineage GephyrocapsaEl Mahdi Bendif, Bruno Nevado, Edgar L. Y. Wong, Kyoko Hagino, Ian Probert, JEREMY R. YOUNG, Rosalind E. M. Rickaby, Dmitry A. Filatov · 2019 · Nature Communications
- Large-Scale Phylogenomic Analyses Reveal the Monophyly of Bryophytes and Neoproterozoic Origin of Land PlantsDanyan Su, Lingxiao Yang, Xuan Shi, Xiaoya Ma, Xiaofan Zhou, S. Blair Hedges, Bojian Zhong · 2021 · Molecular Biology and Evolution
- Population Genetic Inference With MIGRATEPeter Beerli, Somayeh Mashayekhi, Marjan Sadeghi, Marzieh Khodaei, Kyle Shaw · 2019 · Current Protocols in Bioinformatics
- The evolutionary history of bees in time and spaceEduardo A. B. Almeida, Silas Bossert, Bryan N. Danforth, Diego S. Porto, Felipe V. Freitas, Charles “Chuck” Davis, Elizabeth A. Murray, Bonnie B. Blaimer, Tamara Spasojevic, Patrícia R. Ströher et al. · 2023 · Current Biology
- The origin and early spread of SARS-CoV-2 in EuropeNadeau, Sarah A., Vaughan, Timothy G., Scire, Jérémie, Huisman, Jana S., Stadler, Tanja · 2021 · Proceedings of the National Academy of Sciences
- Old World and New World Phasmatodea: Phylogenomics Resolve the Evolutionary History of Stick and Leaf InsectsSabrina Simon, Harald O. Letsch, Sarah Bank-Aubin, Thomas R. Buckley, Alexander Donath, Shanlin Liu, Ryuichiro Machida, Karen Meusemann, Bernhard Y. Misof, Lars Podsiadłowski et al. · 2019 · Frontiers in Ecology and Evolution
- Comprehensive Species Sampling and Sophisticated Algorithmic Approaches Refute the Monophyly of ArachnidaJesús A. Ballesteros, Carlos E. Santibáñez‐López, Caitlin M. Baker, Ligia R. Benavides, Tauana Junqueira Cunha, Guilherme Gainett, Andrew Z. Ontano, Emily V.W. Setton, Claudia P. Arango, Efrat Gavish‐Regev et al. · 2022 · Molecular Biology and Evolution
- An Update of Orthopoxvirus Molecular EvolutionIgor V. Babkin, Irina N. Babkina, Тикунова Нина Викторовна · 2022 · Viruses
- Inference of person-to-person transmission of COVID-19 reveals hidden super-spreading events during the early outbreak phaseLiang Wang, Xavier Didelot, Jing Yang, Gary Wong, Yi Shi, Wenjun Liu, George F. Gao, Yuhai Bi · 2020 · Nature Communications
- Colonisation and Transmission Dynamics of Candida auris among Chronic Respiratory Diseases Patients Hospitalised in a Chest Hospital, Delhi, India: A Comparative Analysis of Whole Genome Sequencing and Microsatellite TypingAnamika Yadav, Anubhav Kumar Singh, Yue Wang, Merlijn H. I. van Haren, Ashutosh Kumar Singh, Theun de Groot, Jacques F. G. M. Meis, Jianping Xu, Anuradha Chowdhary · 2021 · Journal of Fungi
- PhyloSuite v2: The development of an all‐in‐one, efficient and visualization‐oriented suite for molecular dating analysis and other advanced featuresDong Zhao, Tong Ye, Fangluan Gao, Ivan Jakovlić, La Qiong, Yindong Tong, Xiang Liu, Rui Song, Fei Liu, Zhongmin Lian et al. · 2025 · iMeta
- A mirage of cryptic species: Genomics uncover striking mitonuclear discordance in the butterfly Thymelicus sylvestrisJoan Carles Hinojosa, Darina Koubínová, Mark A. Szenteczki, Camille Pitteloud, Vlad Dincă, Nadir Álvarez, Roger Vila · 2019 · Molecular Ecology
- Cycles of fusion and fission enabled rapid parallel adaptive radiations in African cichlidsJoana I. Meier, Matthew D. McGee, David A. Marques, Salome Mwaiko, Mary A. Kishe, S.B. Wandera, Dirk Neumann, Hillary D. J. Mrosso, Lauren J. Chapman, Colin A. Chapman et al. · 2023 · Science
- Comparative chloroplast genome analysis of Artemisia (Asteraceae) in East Asia: insights into evolutionary divergence and phylogenomic implicationsGoon-Bo Kim, Chae Eun Lim, Jin-Seok Kim, Kyeonghee Kim, Jeong Hoon Lee, Hee‐Ju Yu, Jeong‐Hwan Mun · 2020 · BMC Genomics
- Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New ZealandJemma L. Geoghegan, Xiaoyun Ren, Matthew Storey, James Hadfield, Lauren Jelley, Sarah Jefferies, Jill Sherwood, Shevaun Paine, Q. Sue Huang, Jordan Douglas et al. · 2020 · Nature Communications
- Spatiotemporal dynamics and recurrence of chikungunya virus in Brazil: an epidemiological studyWilliam Marciel de Souza, Shirlene Telmos Silva de Lima, Leda Maria Simões Mello, Darlan da Silva Cândido, Lewis Buss, Charles Whittaker, Ingra Morales Claro, Nilani Chandradeva, Fabiana Granja, Ronaldo de Jesus et al. · 2023 · The Lancet Microbe
- Continental-scale patterns of hyper-cryptic diversity within the freshwater model taxon Gammarus fossarum (Crustacea, Amphipoda)Rémi A. Wattier, Tomasz Mamos, Denis Copilaş‐Ciocianu, Mišel Jelić, Anthony Ollivier, Arnaud Chaumot, Michaël Danger, Vincent Felten, Christophe Piscart, Krešimir Žganec et al. · 2020 · Scientific Reports
- Dissemination of Mycobacterium abscessus via global transmission networksChristopher Ruis, Josephine M. Bryant, Scott Cameron Bell, Rachel Mary Thomson, Rebecca M. Davidson, Nabeeh A. Hasan, Jakko van Ingen, Michael Strong, R. Andrés Floto, Julian Parkhill · 2021 · Nature Microbiology
- Freshwater mussels (Bivalvia: Unionidae) from the rising sun (Far East Asia): phylogeny, systematics, and distributionManuel Lopes‐Lima, Akimasa Hattori, Takaki Kondo, Jin Hee Lee, Sang Ki Kim, Akihisa Shirai, Hironori Hayashi, Taira Usui, Kanta Sakuma, Taishi Toriya et al. · 2020 · Molecular Phylogenetics and Evolution
- Mountains, climate and niche heterogeneity explain global patterns of fern diversityJacob S. Suissa, Michael Sundue, Weston Testo · 2021 · Journal of Biogeography
- Genomic Epidemiology Reconstructs the Introduction and Spread of Zika Virus in Central America and MexicoThézé, Julien, Li, Tony, du Plessis, Louis, Bouquet, Jerome, Kraemer, Moritz U.G., Somasekar, Sneha, Yu, Guixia, de Cesare, Mariateresa, Balmaseda, Angel, Kuan, Guillermina et al. · 2018 · Cell Host & Microbe
- Disentangling structural genomic and behavioural barriers in a sea of connectivityJulia M. I. Barth, David Villegas‐Ríos, Carla Freitas, Even Moland, Bastiaan Star, Carl André, Halvor Knutsen, Ian Bradbury, Jan Dierking, Christoph Petereit et al. · 2019 · Molecular Ecology
- RevGadgets: An R package for visualizing Bayesian phylogenetic analyses from RevBayesCarrie M. Tribble, William A. Freyman, Michael J. Landis, Jun Ying Lim, Joëlle Barido‐Sottani, Bjørn Tore Kopperud, Sebastian Höhna, Michael R. May · 2021 · Methods in Ecology and Evolution
- StarBeast3: Adaptive Parallelized Bayesian Inference under the Multispecies CoalescentJordan Douglas, Cinthy L. Jiménez-Silva, Remco Bouckaert · 2022 · Systematic Biology
- Emergence and interstate spread of highly pathogenic avian influenza A(H5N1) in dairy cattleThao-Quyen Nguyen, Carl R. Hutter, Alexey Markin, Megan R Thomas, Kristina Lantz, Mary Lea Killian, Garrett M. Janzen, Sriram Vijendran, Sanket Wagle, Blake Inderski et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
- Ant phylogenomics reveals a natural selection hotspot preceding the origin of complex eusocialityJonathan Romiguier, Marek L. Borowiec, Arthur Weyna, Quentin Helleu, Étienne Loire, Christine La Mendola, Christian Rabeling, Brian Lee Fisher, Philip S. Ward, Laurent Keller · 2022 · Current Biology
- Travel Surveillance and Genomics Uncover a Hidden Zika Outbreak during the Waning EpidemicNathan D. Grubaugh, Sharada Saraf, Karthik Gangavarapu, Alexander Watts, Amanda L. Tan, Rachel J. Oidtman, Jason T. Ladner, Glenn Oliveira, Nathaniel L. Matteson, Moritz U. G. Kraemer et al. · 2019 · Cell
- Archaeogenomic distinctiveness of the Isthmo-Colombian areaMarco Rosario Capodiferro, Bethany Aram, Alessandro Raveane, Nicola Rambaldi Migliore, Giulia Colombo, Linda Ongaro, Javier Sandoval, Tomás Mendizábal, Iosvany Hernández Mora, Maribel Tribaldos et al. · 2021 · Cell
- Lifetime mobility of an Arctic woolly mammothMatthew J. Wooller, Clément P. Bataille, Patrick Scott Druckenmiller, Gregory M. Erickson, Pamela Groves, Norma Haubenstock, Timothy Howe, Johanna Irrgeher, Daniel H. Mann, Katherine L. Moon et al. · 2021 · Science
- Direct RNA sequencing and early evolution of SARS-CoV-2George Taiaroa, Daniel Rawlinson, Leo A. Featherstone, Miranda E. Pitt, Leon Caly, Julian D Druce, Damian F. J. Purcell, Leigh Harty, Thomas Tran, Jason Roberts et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- Next-generation museum genomics: Phylogenetic relationships among palpimanoid spiders using sequence capture techniques (Araneae: Palpimanoidea)Hannah Marie Wood, Vanessa Liz González, Michael W. Lloyd, Jonathan A. Coddington, Nikolaj Scharff · 2018 · Molecular Phylogenetics and Evolution
- Phylogeny of Myxobolidae (Myxozoa) and the evolution of myxospore appendages in the Myxobolus cladeYang Liu, Alena Lövy, Zemao Gu, Ivan Fiala · 2019 · International Journal for Parasitology
- Phylogenomic and Macroevolutionary Evidence for an Explosive Radiation of a Plant Genus in the MioceneHanghui Kong, Fabien L. Condamine, Lihua Yang, AJ Harris, Chao Feng, Fang Wen, Ming Kang · 2021 · Systematic Biology
- Polyploidy promotes species diversification of Allium through ecological shiftsTing‐Shen Han, Quan‐Jing Zheng, Renske E. Onstein, Blanca M. Rojas‐Andrés, Frank Hauenschild, Alexandra Nora Muellner-Riehl, Yaowu Xing · 2019 · New Phytologist
- Phylogenomics of the genus Glycine sheds light on polyploid evolution and life-strategy transitionYongbin Zhuang, Xutong Wang, Xianchong Li, Junmei Hu, Lichuan Fan, Jacob B. Landis, Steven B. Cannon, Jane Grimwood, Jeremy Schmutz, Scott A. Jackson et al. · 2022 · Nature Plants
- Epizootics due to Yellow Fever Virus in São Paulo State, Brazil: viral dissemination to new areas (2016–2017)Mariana Sequetin Cunha, Antônio Charlys da Costa, Natália Coelho Couto de Azevedo Fernandes, Juliana Mariotti Guerra, Fabiana Cristina Pereira dos Santos, Juliana Silva Nogueira, Leandro Guariglia D'Agostino, Shirley Vasconcelos Komninakis, Steven Sol Witkin, Rodrigo Albergaria Réssio et al. · 2019 · Scientific Reports
- The evolution of parental care diversity in amphibiansAndrew I. Furness, Isabella Capellini · 2019 · Nature Communications
- A seventeenth-century Mycobacterium tuberculosis genome supports a Neolithic emergence of the Mycobacterium tuberculosis complexSusanna J. Sabin, Alexander Herbig, Åshild J. Vågene, Torbjörn Ahlström, Gracijela Božović, Caroline Arcini, Denise Kühnert, Kirsten I. Bos · 2020 · Genome biology
- Phylogenomics and species delimitation for effective conservation of manta and devil raysJane Hosegood, Emily Humble, Rob Ogden, Mark de Bruyn, Simon Creer, Guy M. W. Stevens, Mohammed Abudaya, Kim Bassos‐Hull, Ramón Bonfil, Daniel Fernando et al. · 2020 · Molecular Ecology
- Phylogenetic and phylodynamic analyses of SARS-CoV-2Qing Hua Nie, Xingguang Li, Wei Chen, Dehui Liu, Yingying Chen, Haitao Li, Dongying Li, Mengmeng Tian, Wei Chang Colin Tan, Junjie Zai · 2020 · Virus Research
- Genome-wide macroevolutionary signatures of key innovations in butterflies colonizing new host plantsRémi Allio, Benoît Nabholz, Stefan Wanke, Guillaume Chomicki, Oscar Alejandro Pérez-Escobar, Adam M. Cotton, Anne‐Laure Clamens, Gaël J. Kergoat, Felix A. H. Sperling, Fabien L. Condamine · 2021 · Nature Communications
- Lying in wait: the resurgence of dengue virus after the Zika epidemic in BrazilAnderson Fernandes Brito, Laís Ceschini Machado, Rachel J. Oidtman, Márcio Junio Lima Siconelli, Quan Minh Tran, Joseph R. Fauver, Rodrigo Dias de Oliveira Carvalho, Filipe Zimmer Dezordi, Mylena Ribeiro Pereira, Luíza Antunes de Castro-Jorge et al. · 2021 · Nature Communications
- Phylogenomic discordance suggests polytomies along the backbone of the large genus SolanumEdeline Gagnon, Rebecca Hilgenhof, Andrés Orejuela, Angela McDonnell, Gaurav Sablok, Xavier Aubriot, Leandro Lacerda Giacomin, Yuri Gouvêa, Thamyris Bragionis, João Renato Stehmann et al. · 2022 · American Journal of Botany
- Phylogenomic Relationships of Diploids and the Origins of Allotetraploids in Dactylorhiza (Orchidaceae)Marie Kristine Brandrud, Juliane Baar, Maria T Lorenzo, Alexander Athanasiadis, Richard M. Bateman, Mark W. Chase, Mikael Hedrén, Ovidiu Paun · 2019 · Systematic Biology
- An Ancient and Eroded Social Supergene Is Widespread across Formica AntsAlan Brelsford, Jessica Purcell, Amaury Avril, Patrick Tran Van, Junxia Zhang, Timothée Brütsch, Liselotte Sundström, Heikki Helanterä, Michel Chapuisat · 2020 · Current Biology
- Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystemsFrance Denœud, Olivier Godfroy, Corinne Cruaud, Svenja Heesch, Zofia Nehr, Nachida Tadrent, Arnaud Couloux, Loraine Brillet-Guéguen, Ludovic Delage, Dean Mckeown et al. · 2024 · Cell
- Phylogeography Reveals Association between Swine Trade and the Spread of Porcine Epidemic Diarrhea Virus in China and across the WorldWanting He, Nena Bollen, Yi Xu, Jin Zhao, Simon Dellicour, Ziqing Yan, Wenjie Gong, Cheng Zhang, Letian Zhang, Meng Lu et al. · 2021 · Molecular Biology and Evolution
- A tenuis relationship: traditional taxonomy obscures systematics and biogeography of the ‘ Acropora tenuis ’ (Scleractinia: Acroporidae) species complexTom C. L. Bridge, Peter F. Cowman, Andrea M. Quattrini, Victor E. Bonito, Frédéric Sinniger, Saki Harii, Catherine E. I. Head, Julia Yun‐Hsuan Hung, Tuikolongahau Halafihi, Teina Rongo et al. · 2023 · Zoological Journal of the Linnean Society
- Pathophysiology of chikungunya virus infection associated with fatal outcomesWilliam Marciel de Souza, Marcílio Jorge Fumagalli, Shirlene Telmos Silva de Lima, Pierina Lorencini Parise, Deyse Cristina Madruga Carvalho, Cristian Hernandez, Ronaldo de Jesus, Jeany Delafiori, Darlan da Silva Cândido, Victor Corasolla Carregari et al. · 2024 · Cell Host & Microbe
- Stable species boundaries despite ten million years of hybridization in tropical eelsJulia M. I. Barth, Chrysoula Gubili, Michael Matschiner, Ole K. Tørresen, Shun Watanabe, Bernd Egger, Yu‐San Han, Éric Feunteun, Rubén Sommaruga, Robert Jehle et al. · 2020 · Nature Communications
- Phylogeny and divergence time estimation of the walnut family (Juglandaceae) based on nuclear RAD-Seq and chloroplast genome dataXian‐Yun Mu, Ling Tong, Miao Sun, Yixuan Zhu, Jun Wen, Qinwen Lin, Bing Liu · 2020 · Molecular Phylogenetics and Evolution
- A Phylodynamic Workflow to Rapidly Gain Insights into the Dispersal History and Dynamics of SARS-CoV-2 LineagesSimon Dellicour, Keith Durkin, Samuel Leandro Hong, Bert Vanmechelen, Joan Martí‐Carreras, Mandev S. Gill, Cécile Meex, Sébastien Bontems, Emmanuel André, Marius Gilbert et al. · 2020 · Molecular Biology and Evolution
- Predicting transcriptional responses to cold stress across plant speciesXiaoxi Meng, Zhikai Liang, Xiuru Dai, Yang Zhang, Samira Mahboub, Daniel W. Ngu, Rebecca Roston, James C. Schnable · 2021 · Proceedings of the National Academy of Sciences
- Phylogenetic Structure and Sequential Dominance of Sub-Lineages of PRRSV Type-2 Lineage 1 in the United StatesIgor A. D. Paploski, Nakarin Pamornchainavakul, Dennis N. Makau, Albert Rovira, Cesar A. Corzo, Declan C. Schroeder, Maxim C.‐J. Cheeran, Andrea Beate Doeschl-Wilson, Rowland Raymond Kao, Samantha Lycett et al. · 2021 · Vaccines
- Molecular evolutionary characteristics of SARS‐CoV‐2 emerging in the United StatesShihang Wang, Xuanyu Xu, Cai Wei, Sicong Li, Jingying Zhao, Yin Zheng, Xiaoyu Liu, Xiaomin Zeng, Wenliang Yuan, Sihua Peng · 2021 · Journal of Medical Virology
- Two Basidiomycete Fungi in the Cortex of Wolf LichensVeera Tuovinen, Stefan Ekman, Göran Thor, Dan Vanderpool, Toby Spribille, Hanna Johannesson · 2019 · Current Biology
- Ignoring stratigraphic age uncertainty leads to erroneous estimates of species divergence times under the fossilized birth–death processJoëlle Barido‐Sottani, Gabriel Aguirre Fernández, Melanie Jane Hopkins, Tanja Stadler, Rachel C. M. Warnock · 2019 · Proceedings of the Royal Society B Biological Sciences
- Ancient tropical extinctions at high latitudes contributed to the latitudinal diversity gradient*Andrea S. Meseguer, Fabien L. Condamine · 2020 · Evolution
- Comparative and phylogenetic analyses of six Kenya Polystachya (Orchidaceae) species based on the complete chloroplast genome sequencesHui Jiang, Jing Tian, Jiaxin Yang, Xiang Dong, Zhixiang Zhong, Geoffrey Mwachala, Caifei Zhang, Guang‐Wan Hu, Qingfeng Wang · 2022 · BMC Plant Biology
- Diversity and pathogenicity of Colletotrichum species causing strawberry anthracnose in Taiwan and description of a new species, Colletotrichum miaoliense sp. nov.Pei-Che Chung, Hung‐Yi Wu, Yen‐Wen Wang, Hiran Anjana Ariyawansa, Hsien-Pin Hu, Ting‐Hsuan Hung, S. S. Tzean, Chia‐Lin Chung · 2020 · Scientific Reports
- Predicting the evolution of the Lassa virus endemic area and population at risk over the next decadesRaphaëlle Klitting, Liana Eleni Kafetzopoulou, Wim Thiery, Gytis Dudas, Sophie Gryseels, Anjali Kotamarthi, Bram Vrancken, Karthik Gangavarapu, Mambu Momoh, John Demby Sandi et al. · 2022 · Nature Communications
- Ancient Bacterial Genomes Reveal a High Diversity of Treponema pallidum Strains in Early Modern EuropeKerttu Majander, Saskia Pfrengle, Arthur Kocher, Judith Neukamm, Louis du Plessis, Marta Pla-Díaz, Natasha Arora, Gülfirde Akgül, Kati Salo, Rachel Schats et al. · 2020 · Current Biology
- Fossil-Informed Models Reveal a Boreotropical Origin and Divergent Evolutionary Trajectories in the Walnut Family (Juglandaceae)Qiuyue Zhang, Richard H. Ree, Nicolas Salamin, Yaowu Xing, Daniele Silvestro · 2021 · Systematic Biology
- Comprehensive taxon sampling and vetted fossils help clarify the time tree of shorebirds (Aves, Charadriiformes)David Černý, Rossy Natale · 2022 · Molecular Phylogenetics and Evolution
- In-host evolution of Staphylococcus epidermidis in a pacemaker-associated endocarditis resulting in increased antibiotic toleranceVanina Dengler Haunreiter, Mathilde Boumasmoud, Nicola Häffner, Dennis Wipfli, Nadja Leimer, Carole Rachmühl, Denise Kühnert, Yvonne Achermann, Reinhard Zbinden, Stefano Benussi et al. · 2019 · Nature Communications
- Phylogeography of Lassa Virus in NigeriaDeborah U. Ehichioya, Simon Dellicour, Meike Pahlmann, Toni Rieger, Lisa Oestereich, Beate Becker-Ziaja, Dániel Cadar, Yemisi Ighodalo, Thomas Olokor, Emmanuel Omomoh et al. · 2019 · Journal of Virology
- Evaluating taxonomic inflation: towards evidence-based species delimitation in Eurasian vipers (Serpentes: Viperinae)Inês Freitas, Sylvain Ursenbacher, Konrad Mebert, Oleksandr I. Zinenko, Silke Schweiger, Wolfgang Wüster, José Carlos Brito, Jelka Crnobrnja‐Isailović, Bálint Halpern, Soumia Fahd D et al. · 2020 · Amphibia-Reptilia
- Antibiotic-resistant organisms establish reservoirs in new hospital built environments and are related to patient blood infection isolatesKimberley V. Sukhum, Erin P. Newcomer, Candice Cass, Meghan A. Wallace, Caitlin Johnson, Jeremy D. Fine, Steven R. Sax, Margaret H. Barlet, Carey‐Ann D. Burnham, Gautam A. Dantas et al. · 2022 · Communications Medicine
- Out of the Himalaya-Hengduan Mountains: Phylogenomics, biogeography and diversification of Polygonatum Mill. (Asparagaceae) in the Northern HemisphereMaoqin Xia, Ying Liu, Jingjing Liu, Donghong Chen, Yan Shi, Zhongxia Chen, Dingrui Chen, Ruofan Jin, Hongliang Chen, Hans Peter Comes et al. · 2022 · Molecular Phylogenetics and Evolution
- Dinosaur biodiversity declined well before the asteroid impact, influenced by ecological and environmental pressuresFabien L. Condamine, Guillaume Guinot, Michael J. Benton, Philip J. Currie · 2021 · Nature Communications
- A subterranean adaptive radiation of amphipods in EuropeŠpela Borko, Peter Trontelj, Ole Seehausen C D, Ajda Moškrič, Cene Fišer · 2021 · Nature Communications
- Deep Ancestral Introgression Shapes Evolutionary History of Dragonflies and DamselfliesAnton Suvorov, Céline Scornavacca, Mao Fujimoto, Paul Bodily, Mark Clement, Keith A. Crandall, Michael F. Whiting, Daniel R. Schrider, Seth Bybee · 2021 · Systematic Biology
- Genetic diversity and characteristics of high-level tigecycline resistance Tet(X) in Acinetobacter speciesChong Chen, Chao‐Yue Cui, Jun-Jun Yu, He Qian, Xiao-Ting Wu, Yuzhang He, Ze-Hua Cui, Cang Li, Qiu-Lin Jia, Xiang-Guang Shen et al. · 2020 · Genome Medicine
- Integration drives rapid phenotypic evolution in flatfishesKory M. Evans, Olivier Larouche, Sara-Jane Watson, Stacy C. Farina, María Laura Habegger, Matt Friedman · 2021 · Proceedings of the National Academy of Sciences
- Global Genetic Diversity, Introgression, and Evolutionary Adaptation of Indicine Cattle Revealed by Whole Genome SequencingChen, Ningbo, Xia, Xiaoting, Hanif, Quratulain, Zhang, Fengwei, Dang, Ruihua, Huang, Bizhi, Lyu, Yang, Luo, Xiaoyu, Zhang, Hucai, Yan, Huixuan et al. · 2023 · Nature Communications
- Taxonomical over splitting in the Rhodnius prolixus (Insecta: Hemiptera: Reduviidae) clade: Are R. taquarussuensis (da Rosa et al., 2017) and R. neglectus (Lent, 1954) the same species?Juliana Damieli Nascimento, João Aristeu da Rosa, Fabian C. Salgado‐Roa, Carolina Hernández, Carolina Pardo‐Díaz, Kaio Cesar Chaboli Alevi, Amanda Ravazi, Jader de Oliveira, Maria Tercília Vilela de Azeredo‐Oliveira, Camilo A. Salazar et al. · 2019 · PLoS ONE
- WGS based study of the population structure of Salmonella enterica serovar InfantisPernille Gymoese, Kristoffer Kiil, Mia Torpdahl, Mark T. Østerlund, Gitte Sørensen, John Elmerdahl Olsen, Eva Møller Nielsen, Eva Litrup · 2019 · BMC Genomics
- Integrative taxonomy, biogeography and conservation of freshwater mussels (Unionidae) in RussiaИван Николаевич Болотов, Alexander Vasilevich Kondakov, Ekaterina S. Konopleva, Ilya V. Vikhrev, Olga V. Aksenova, Andrey S. Aksenov, Yulia V. Bespalaya, Alexey V. Borovskoy, Данилов Петр Петрович, Геннадий Александрович Дворянкин et al. · 2020 · Scientific Reports
- The Radiation of Darwin’s Giant Daisies in the Galápagos IslandsMario Fernández‐Mazuecos, Pablo Vargas, Ross A. McCauley, David Monjas, Ana Otero, Jaime A. Chaves, Juan Ernesto Guevara, Gonzalo Francisco Rivas‐Torres · 2020 · Current Biology
- The Destructive Tree Pathogen Phytophthora ramorum Originates from the Laurosilva Forests of East AsiaThomas Jung, Marília Horta Jung, Joan Webber, Koji Kageyama, Ayaka Hieno, Hayato Masuya, Seiji Uematsu, Ana Pérez-Sierra, Anna Harris, Jack Forster et al. · 2021 · Journal of Fungi
- Disproportionate extinction of South American mammals drove the asymmetry of the Great American Biotic InterchangeJuan D. Carrillo, Søren Faurby, Daniele Silvestro, Alexander Zizka, Carlos Alberto Jaramillo, Christine D. Bacon, Alexandre Antonelli · 2020 · Proceedings of the National Academy of Sciences
- New multilocus phylogeny reorganises the family Macrobiotidae (Eutardigrada) and unveils complex morphological evolution of the Macrobiotus hufelandi groupDaniel Stec, Matteo Vecchi, Sara Calhim, Łukasz Michalczyk · 2020 · Molecular Phylogenetics and Evolution
- Culicidae evolutionary history focusing on the Culicinae subfamily based on mitochondrial phylogenomicsAlexandre Freitas da Silva, Laís Ceschini Machado, Márcia Bicudo de Paula, Carla Júlia da Silva Pessoa Vieira, Roberta Vieira de Morais Bronzoni, Maria Alice Varjal de Melo Santos, Gabriel Luz Wallau · 2020 · Scientific Reports