Posterior summarization in Bayesian phylogenetics using tracer 1.7

Cited by (1,017)

Items 201–300 of 1,017

1. Phylogenomics and species delimitation of the economically important Black Basses (Micropterus)
   Daemin Kim, Andrew T. Taylor, Thomas J. Near · 2022 · Scientific Reports
2. Comparative mitogenomics of the Decapoda reveals evolutionary heterogeneity in architecture and composition
   Mun Hua Tan, Han Ming Gan, Yin Peng Lee, Heather D. Bracken‐Grissom, Tin‐Yam Chan, Adam D. Miller, Christopher M. Austin · 2019 · Scientific Reports
3. Phylogenomic Relationships and Evolution of Polyploid Salix Species Revealed by RAD Sequencing Data
   Natascha Dorothea Wagner, Li He, Elvira Hörandl · 2020 · Frontiers in Plant Science
4. A point mutation in recC associated with subclonal replacement of carbapenem-resistant Klebsiella pneumoniae ST11 in China
   Kai Zhou, Chun‐Xu Xue, Tingting Xu, Ping Shen, Sha Wei, Kelly L. Wyres, Margaret M. C. Lam, Jinquan Liu, Haoyun Lin, Yunbo Chen et al. · 2023 · Nature Communications
5. The molecular phylogenetics of Trachymyrmex Forel ants and their fungal cultivars provide insights into the origin and coevolutionary history of ‘higher‐attine’ ant agriculture
   Scott E. Solomon, Christian Rabeling, Jeffrey Sosa‐Calvo, Cauê T. Lopes, André Luis Rodrigues, Heraldo Luis De Vasconcelos, Maurício Bacci, Ulrich G. Mueller, Ted R. Schultz · 2019 · Systematic Entomology
6. Phylogenomics of Parasitic and Nonparasitic Lice (Insecta: Psocodea): Combining Sequence Data and Exploring Compositional Bias Solutions in Next Generation Data Sets
   Robert S. de Moya, Kazunori Yoshizawa, Kimberly K. O. Walden, Andrew D. Sweet, Chris H. Dietrich, Johnson Kevin P · 2020 · Systematic Biology
7. A Founder Effect Led Early SARS-CoV-2 Transmission in Spain
   Francisco Díez‐Fuertes, María Iglesias‐Caballero, Javier García‐Pérez, Sara Monzón, Pilar Jiménez, Sarai Varona, Isabel Cuesta, Ángel Zaballos, Mercedes Jiménez, Laura Checa et al. · 2020 · Journal of Virology
8. Long-term isolation of European steppe outposts boosts the biome’s conservation value
   Philipp Kirschner, Eliška Záveská, Alexander Gamisch, Andreas Hilpold, Emiliano Trucchi, Ovidiu Paun, Isabel Sanmartín, Birgit Christiane Schlick-Steiner, Božo Frajman, Wolfgang Arthofer et al. · 2020 · Nature Communications
9. A 5,000-year-old hunter-gatherer already plagued by Yersinia pestis
   Julian Susat, Harald Lübke, Alexander Immel, Ute Brinker, Aija Macāne, John Meadows, Britta Steer, Andreas Tholey, Ilga Zagorska, Guntis Gerhards et al. · 2021 · Cell Reports
10. A mitochondrial genome phylogeny of voles and lemmings (Rodentia: Arvicolinae): Evolutionary and taxonomic implications
    N. I. Abramson, Semyon Yu. Bodrov, Olga Bondareva, Evgeny A. Genelt-Yanovskiy, Tatyana V. Petrova · 2021 · PLoS ONE
11. Distinct YFV Lineages Co-circulated in the Central-Western and Southeastern Brazilian Regions From 2015 to 2018
    Edson Oliveira Delatorre, Filipe Vieira Santos de Abreu, Ieda Pereira Ribeiro, Mariela Martínez Gómez, Alexandre Araújo Cunha dos Santos, Anielly Ferreira-de-Brito, MAYCON SABASTIÃO ALBERTO SANTOS NEVES, Iule de Souza Bonelly, Rafaella Moraes de Miranda, Nathália Dias Furtado et al. · 2019 · Frontiers in Microbiology
12. Phylogeny, origin and dispersal of Saussurea (Asteraceae) based on chloroplast genome data
    LIAN-SHENG XU, Sonia Herrando‐Moraira, Alfonso Susanna, Mercè Galbany‐Casals, YOU-SHENG CHEN · 2019 · Molecular Phylogenetics and Evolution
13. A new molecular phylogeny-based taxonomy of parasitic barnacles (Crustacea: Cirripedia: Rhizocephala)
    Jens T. Høeg, Christoph Noever, David A Rees, Keith A. Crandall, Henrik Glenner · 2019 · Zoological Journal of the Linnean Society
14. Comprehensive genome analyses of Sellimonas intestinalis, a potential biomarker of homeostasis gut recovery
    Marina Muñoz, Enzo Guerrero-Araya, Catalina Cortés-Tapia, Ángela Plaza-Garrido, Trevor D. Lawley, Daniel Paredes‐Sabja · 2020 · Microbial Genomics
15. DNA Barcodes Combined with Multilocus Data of Representative Taxa Can Generate Reliable Higher-Level Phylogenies
    Gerard Talavera, Vladimir A. Lukhtanov, Naomi E. Pierce, Roger Vila · 2021 · Systematic Biology
16. Phylogeny, biogeography and diversification of the mining bee family Andrenidae
    Silas Bossert, Thomas James Wood, Sébastien Patiny, Denis Michez, Eduardo A. B. Almeida, Robert L. Minckley, Laurence Packer, John L. Neff, Robert S. Copeland, Jakub Straka et al. · 2021 · Systematic Entomology
17. Emergence and phenotypic characterization of the global SARS-CoV-2 C.1.2 lineage
    Cathrine Scheepers, Josie Everatt, Daniel Gyamfi Amoako, Houriiyah Tegally, Constantinos Kurt Wibmer, Anele Mnguni, Arshad Ismail, Boitshoko Mahlangu, Bronwen E. Lambson, Simone I. Richardson et al. · 2022 · Nature Communications
18. The genomic history and global expansion of domestic donkeys
    Evelyn T. Todd, Laure Tonasso‐Calvière, Loreleï Chauvey, Stéphanie Schiavinato, Antoine Fages, Andaine Seguin‐Orlando, Pierre Clavel, Naveed Khan, Lucía Pérez-Pardal, Laura Patterson Rosa et al. · 2022 · Science
19. Machine learning and metagenomics reveal shared antimicrobial resistance profiles across multiple chicken farms and abattoirs in China
    Michelle Baker, Xibin Zhang, Alexandre Maciel-Guerra, Yinping Dong, Wei Wang, Yujie Hu, David Renney, Yue Hu, Longhai Liu, Hui Li et al. · 2023 · Nature Food
20. Phylogenomic analysis of trichomycterid catfishes (Teleostei: Siluriformes) inferred from ultraconserved elements
    Luz E. Ochoa, Aléssio Datovo, Carlos DoNascimiento, Fábio Fernandes Roxo, Mark Henry Sabaj, Jonathan L. Chang, Bruno Francelino de Melo, Gabriel de Souza da Costa e Silva, Fausto Foresti, Michael E. Alfaro et al. · 2020 · Scientific Reports
21. Ancient DNA reveals the chronology of walrus ivory trade from Norse Greenland
    Bastiaan Star, James H. Barrett, Agata T. Gondek, Sanne Boessenkool · 2018 · Proceedings of the Royal Society B Biological Sciences
22. Agricultural intensification and the evolution of host specialism in the enteric pathogen Campylobacter jejuni
    Evangelos Mourkas, Aidan J. Taylor, Guillaume Méric, Sion Bayliss, Ben Pascoe, Leonardos Mageiros, Jessica Kate Calland, Matthew D. Hitchings, Anne Ridley, Ana Vidal et al. · 2020 · Proceedings of the National Academy of Sciences
23. Origin and elaboration of a major evolutionary transition in individuality
    Ab. Matteen Rafiqi, Arjuna Rajakumar, Ehab Abouheif · 2020 · Nature
24. E484K as an innovative phylogenetic event for viral evolution: Genomic analysis of the E484K spike mutation in SARS-CoV-2 lineages from Brazil
    Ferrareze, Patrícia Aline Gröhs, Franceschi, Vinícius Bonetti, Mayer, Amanda de Menezes, Caldana, Gabriel Dickin, Zimerman, Ricardo Ariel, Thompson, Claudia Elizabeth · 2021 · Infection, Genetics and Evolution
25. A Distinct Phylogenetic Cluster of Indian Severe Acute Respiratory Syndrome Coronavirus 2 Isolates
    Sofia Banu, Bani Jolly, Payel Mukherjee, Priya Singh, Shagufta Khan, Lamuk Zaveri, Sakshi Shambhavi, Namami Gaur, Shashikala Reddy, K. Kaveri et al. · 2020 · Open Forum Infectious Diseases
26. An early Cambrian euarthropod with radiodont-like raptorial appendages
    Han Zeng, Fangchen Zhao, Kecheng Niu, Maoyan Zhu, Diying Huang · 2020 · Nature
27. Convergence assessment for Bayesian phylogenetic analysis using MCMC simulation
    Luiza Guimarães Fabreti, Sebastian Höhna · 2021 · Methods in Ecology and Evolution
28. Mitogenomes Reveal Two Major Influxes of Papuan Ancestry across Wallacea Following the Last Glacial Maximum and Austronesian Contact
    Gludhug A. Purnomo, Kieren J. Mitchell, Sue O’Connor, Shimona Kealy, Leonard Taufik, Sophie Schiller, Adam B. Rohrlach, Alan Cooper, Bastien Llamas, Herawati Sudoyo et al. · 2021 · Genes
29. Prey partitioning and livestock consumption in the world’s richest large carnivore assemblage
    Xinning Shao, Qi Lu, Mengyin Xiong, Hongliang Bu, Xiaoyun Shi, Dajun Wang, Jindong Zhao, Sheng Li, Meng Yao · 2021 · Current Biology
30. Emergence and spread of SARS-CoV-2 lineage B.1.620 with variant of concern-like mutations and deletions
    Gytis Dudas, Samuel Leandro Hong, Barney I. Potter, Sébastien Calvignac‐Spencer, Frédéric S. Niatou-Singa, Thais B. Tombolomako, Terence Fuh Neba, Ulrich Vickos, Markus Ulrich, Fabian Hubertus Leendertz et al. · 2021 · Nature Communications
31. Species diversity, taxonomy and multi-gene phylogeny of phlebioid clade (Phanerochaetaceae, Irpicaceae, Meruliaceae) of Polyporales
    Che-Chih Chen, Chi‐Yu Chen, Sheng-Hua Wu · 2021 · Fungal Diversity
32. Brawn before brains in placental mammals after the end-Cretaceous extinction
    Ornella Bertrand, Sarah L. Shelley, Thomas E. Williamson, John R. Wible, Stephen G. B. Chester, John J. Flynn, Luke Holbrook, Tyler R. Lyson, Jin Meng, Ian M. Miller et al. · 2022 · Science
33. A single mutation in dairy cow-associated H5N1 viruses increases receptor binding breadth
    Marina R. Good, Monica L. Fernández‐Quintero, Wei Ji, Alesandra J. Rodriguez, Julianna Han, Andrew B. Ward, Jenna J. Guthmiller · 2024 · Nature Communications
34. Discovery and Genomic Characterization of a Novel Henipavirus, Angavokely Virus, from Fruit Bats in Madagascar
    Madera, Sharline, Kistler, Amy, Ranaivoson, Hafaliana C., Ahyong, Vida, Andrianiaina, Angelo, Andry, Santino, Raharinosy, Vololoniaina, Randriambolamanantsoa, Tsiry H., Ravelomanantsoa, Ny Anjara Fifi, Tato, Cristina M. et al. · 2022 · Journal of Virology
35. A new taxonomic backbone for the infrageneric classification of the species‐rich genus Silene (Caryophyllaceae)
    Farzaneh Jafari, Shahin Zarré, Abbas Gholipour, Frida Eggens, Richard K. Rabeler, Bengt Oxelman · 2020 · Taxon
36. Precipitation is the main axis of tropical plant phylogenetic turnover across space and time
    Jens J. Ringelberg, Erik J. M. Koenen, Benjamin Sauter, Anahita Aebli, Juliana Gastaldello Rando, João Ricardo Vieira Iganci, Luciano Paganucci de Queiroz, Daniel J. Murphy, Myriam Gaudeul, Anne Bruneau et al. · 2023 · Science Advances
37. Large-scale mitogenomic analysis of the phylogeography of the Late Pleistocene cave bear
    Joscha Gretzinger, Martyna Molak, Ella Reiter, Saskia Pfrengle, Christian Urban, Judith Neukamm, Michel Blant, Nicholas J. Conard, Christophe Cupillard, Vesna M. Dimitrijević et al. · 2019 · Scientific Reports
38. Reconstructing the Complex Evolutionary History of the Papuasian Schefflera Radiation Through Herbariomics
    Zhi Qiang Shee, David G. Frodin, Rodrigo Cámara‐Leret, Lisa Pokorny · 2020 · Frontiers in Plant Science
39. A comprehensive analysis of genome composition and codon usage patterns of emerging coronaviruses
    Fernando López Tort, Matías Castells, Juan Cristina · 2020 · Virus Research
40. Multiple Introductions of SARS-CoV-2 Alpha and Delta Variants into White-Tailed Deer in Pennsylvania
    Andrew D. Marques, Scott A. Sherrill-Mix, J.K. Everett, Hriju Adhikari, Shantan G. Reddy, Julie C. Ellis, Haley Zeliff, Sabrina S. Greening, Carolyn C. Cannuscio, Katherine M. Strelau et al. · 2022 · mBio
41. Global genomic surveillance of monkeypox virus
    James Richard Otieno, Christopher Ruis, Anyebe Bernard Onoja, Krutika Kuppalli, Ana Hoxha, Andreas Nitsche, Annika Brinkmann, Janine Michel, Placide Mbala Kingebeni, Daniel Mukadi‐Bamuleka et al. · 2024 · Nature Medicine
42. Speciation Associated with Shifts in Migratory Behavior in an Avian Radiation
    Valentina Gómez‐Bahamón, Roberto Márquez, Alex E. Jahn, Cristina Yumi Miyaki, Diego T. Tuero, Oscar Laverde-R., Silvia Restrepo, Carlos Daniel Cadena · 2020 · Current Biology
43. Global Distribution and Evolution of Mycobacterium bovis Lineages
    Cristina Kraemer Zimpel, José Salvatore Leister Patané, Aureliano Coelho Proença Guedes, Robson Francisco de Souza, Taiana Tainá Silva‐Pereira, Naila Camargo, Antônio Francisco de Souza Filho, Cássia Yumi Ikuta, José Soares Ferreira Neto, João Carlos Setúbal et al. · 2020 · Frontiers in Microbiology
44. Plastome evolution and phylogenetic relationships among Malvaceae subfamilies
    Jianhua Wang, Michael J. Moore, Hong‐Xin Wang, Zhi‐Xin Zhu, Hua‐Feng Wang · 2020 · Gene
45. Discovery of a 382-nt deletion during the early evolution of SARS-CoV-2
    Yvonne C. F. Su, Danielle E. Anderson, Barnaby Edward Young, Feng Zhu, Martin Linster, Shirin Kalimuddin, Jenny Guek Hong Low, Yan Zhuang, Jayanthi Jayakumar, Louisa Jin Sun et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
46. Towards a global phylogeny of freshwater mussels (Bivalvia: Unionida): Species delimitation of Chinese taxa, mitochondrial phylogenomics, and diversification patterns
    Xiao‐Chen Huang, Jin-Hui Su, Jiexiu Ouyang, Shan Ouyang, Chunhua Zhou, Xiaoping Wu · 2018 · Molecular Phylogenetics and Evolution
47. A chromosome‐level genome assembly ofPyropia haitanensis(Bangiales, Rhodophyta)
    Min Cao, Kuipeng Xu, Xinzi Yu, Guiqi Bi, Yang Liu, Fanna Kong, Peipei Sun, Xianghai Tang, Guoying Du, Yuan Ge et al. · 2019 · Molecular Ecology Resources
48. Conservation and innovation: Plastome evolution during rapid radiation of Rhodiola on the Qinghai-Tibetan Plateau
    Dan-Ni Zhao, Yi Ren, Jianqiang Zhang · 2019 · Molecular Phylogenetics and Evolution
49. Evolutionary history and divergence times of Odonata (dragonflies and damselflies) revealed through transcriptomics
    Manpreet K. Kohli, Harald O. Letsch, Carola Greve, Olivier Béthoux, Isabelle Deregnaucourt, Shanlin Liu, Xin Yu Zhou, Alexander Donath, Christoph Mayer, Lars Podsiadłowski et al. · 2021 · iScience
50. A highly virulent variant of HIV-1 circulating in the Netherlands
    Chris Wymant, Daniela Bezemer, François Blanquart, Luca Ferretti A, Astrid Gall, Matthew D. Hall, Tanya Golubchik, Margreet Bakker, Swee Hoe Ong, Lele Zhao et al. · 2022 · Science
51. A second view on the evolution of flight in stick and leaf insects (Phasmatodea)
    Sarah Bank-Aubin, Sven Bradler · 2022 · BMC Ecology and Evolution
52. Discovery of All Three Types in Cartilaginous Fishes Enables Phylogenetic Resolution of the Origins and Evolution of Interferons
    Anthony K. Redmond, Jun Zou, Christopher John Secombes, Daniel J. Macqueen, Helen M. Dooley · 2019 · Frontiers in Immunology
53. Biogeographic study of human gut-associated crAssphage suggests impacts from industrialization and recent expansion
    Tanvi P. Honap, Krithivasan Sankaranarayanan, Stephanie L. Schnorr, Andrew T. Ozga, Christina Warinner, Cecil M. Lewis · 2020 · PLoS ONE
54. Genomic and Epidemiological Surveillance of Zika Virus in the Amazon Region
    Marta Giovanetti, Nuno Rodrigues Faria, José Lourenço, Jaqueline Góes de Jesus, Joilson Xavier, Ingra Morales Claro, Moritz U. G. Kraemer, Vagner Fonseca, Simon Dellicour, Julien Thézé et al. · 2020 · Cell Reports
55. A taxonomic revision of Lemna sect. Uninerves (Lemnaceae)
    Manuela Bog, K. Sowjanya Sree, Jörg Fuchs, Hoang Thi Nhu Phuong, Ingo A. Schubert, Jan Kuever, Andreas Rabenstein, Simona Paolacci, Marcel A. K. Jansen, Klaus‐J. Appenroth · 2020 · Taxon
56. Evolutionary Dynamics and Dissemination Pattern of the SARS-CoV-2 Lineage B.1.1.33 During the Early Pandemic Phase in Brazil
    Paola Cristina Resende, Edson Oliveira Delatorre, Tiago Gräf, Daiana Mir, Fernando Couto Motta, Luciana Appolinario, Anna Carolina Dias Paixão, Ana Carolina da Fonseca Mendonça, Maria Ogrzewalska, Bráulia Costa Caetano et al. · 2021 · Frontiers in Microbiology
57. Contact-tracing in cultural evolution: a Bayesian mixture model to detect geographic areas of language contact
    Peter Ranacher, Nico Neureiter, Rik van Gijn, Barbara Sonnenhauser, Anastasia Escher, Robert Weibel, Pieter C. Muysken, Balthasar Bickel · 2021 · Journal of The Royal Society Interface
58. Africa’s oldest dinosaurs reveal early suppression of dinosaur distribution
    Christopher T. Griffin, Brenen M. Wynd, Darlington Munyikwa, Tim J. Broderick, Michel Zondo, Stephen Tolan, Max C. Langer, Sterling J. Nesbitt, Hazel R. Taruvinga · 2022 · Nature
59. The relative transmission fitness of multidrug-resistant Mycobacterium tuberculosis in a drug resistance hotspot
    Chloé Loiseau, Etthel M. Windels, Sebastian M. Gygli, Levan Jugheli, Nino Maghradze, Daniela Brites, Amanda J Ross, Galo Adrián Goig, Miriam Reinhard, Sònia Borrell et al. · 2023 · Nature Communications
60. A high-quality assembly of the nine-spined stickleback (Pungitius pungitius) genome
    Srinidhi Varadharajan, Pasi M. A. Rastas, Ari Löytynoja, Michael Matschiner, Federico C. F. Calboli, Baocheng Guo, Alexander J. Nederbragt, Kjetill S. Jakobsen, Juha Merilä · 2019 · Genome Biology and Evolution
61. Phylogenetic relationship between Australian Fusarium oxysporum isolates and resolving the species complex using the multispecies coalescent model
    Saidi R. Achari, Jatinder K. Kaur, Quang Dinh, Ross Cameron Mann, Timothy Sawbridge, Brett Anthony Summerell, Jacqueline Edwards · 2020 · BMC Genomics
62. Pre-extinction Demographic Stability and Genomic Signatures of Adaptation in the Woolly Rhinoceros
    Edana Lord, Nicolás Dussex, Marcin Kierczak, David Díez‐del‐Molino, Oliver A. Ryder, David W. G. Stanton, Marcus Thomas P. Gilbert, Fátima Sánchez-Barreiro, Guojie Zhang, Mikkel‐Holger S. Sinding et al. · 2020 · Current Biology
63. Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom‐forming fungi
    Brian P. Looney, Shingo Miyauchi, Emmanuelle Morin, Élodie Drula, Pierre‐Emmanuel Courty, Annegret Kohler, Alan Kuo, Kurt M. LaButti, Jasmyn L. Pangilinan, Anna Lipzen et al. · 2021 · New Phytologist
64. A Total-Evidence Dated Phylogeny of Echinoidea Combining Phylogenomic and Paleontological Data
    Nicolás Mongiardino Koch, Jeffrey R. Thompson · 2020 · Systematic Biology
65. Plastid phylogenomics and biogeographic analysis support a trans-Tethyan origin and rapid early radiation of Cornales in the Mid-Cretaceous
    Chao‐Nan Fu, Zhi‐Qiong Mo, Junbo Yang, Xue‐Jun Ge, De-Zhu Li, Qiu‐Yun Xiang, Lian‐Ming Gao · 2019 · Molecular Phylogenetics and Evolution
66. Bayesian Inference of Species Trees using Diffusion Models
    Marnus Stoltz, Boris Baeumer, Remco Bouckaert, Colin Fox, Gordon Hiscott, David Bryant · 2020 · Systematic Biology
67. Museomics of tree squirrels: a dense taxon sampling of mitogenomes reveals hidden diversity, phenotypic convergence, and the need of a taxonomic overhaul
    Edson F. Abreu, Silvia Eliza D`oliveira Pavan, Mirian T. N. Tsuchiya, Don E. Wilson, Alexandre Reis Percequillo, Jesús Eduardo Maldonado · 2020 · BMC Evolutionary Biology
68. Sampling bias and model choice in continuous phylogeography: Getting lost on a random walk
    Antanas Kalkauskas, Umberto Perron, Yuxuan Sun, Nick Goldman, Guy Baele, Stéphane Guindon, Nicola De Maio · 2021 · PLoS Computational Biology
69. Relax, Keep Walking — A Practical Guide to Continuous Phylogeographic Inference with BEAST
    Simon Dellicour, Mandev S. Gill, Nuno Rodrigues Faria, Andrew Rambaut, Oliver G. Pybus, Marc A. Suchard, Philippe Lemey · 2021 · Molecular Biology and Evolution
70. Purifying Selection Determines the Short-Term Time Dependency of Evolutionary Rates in SARS-CoV-2 and pH1N1 Influenza
    Mahan Ghafari, Louis du Plessis, Jayna Raghwani, Samir Bhatt, Bo Xu, Oliver G. Pybus, Aris Katzourakis · 2022 · Molecular Biology and Evolution
71. Dense sampling of taxa and characters improves phylogenetic resolution among deltocephaline leafhoppers (Hemiptera: Cicadellidae: Deltocephalinae)
    Yanghui Cao, Chris H. Dietrich, James N. Zahniser, Dmitry A. Dmitriev · 2022 · Systematic Entomology
72. The Chalcidoidea bush of life: evolutionary history of a massive radiation of minute wasps
    Astrid Cruaud, Jean–Yves Rasplus, Junxia Zhang, Roger A. Burks, Gérard Delvare, Lucian Fusu, ALEX V. GUMOVSKY, John Huber, Petr Janšta, Mircea‐Dan Mitroiu et al. · 2023 · Cladistics
73. Rapid evolution and biogeographic spread in a colorectal cancer
    João M. Alves, Sonia Prado‐Lòpez, José Cameselle‐Teijeiro, David Posada · 2019 · Nature Communications
74. Radiation of the coralline red algae (Corallinophycidae, Rhodophyta) crown group as inferred from a multilocus time-calibrated phylogeny
    Viviana Peña, Christophe Vieira, Juan Carlos Braga, Julio Aguirre, Anja Rösler, Guy Baele, Olivier De Clerck, Line Le Gall · 2020 · Molecular Phylogenetics and Evolution
75. Emergence and global spread of Listeria monocytogenes main clinical clonal complex
    Alexandra Moura, Noémie Lefrancq, Alexandre Leclercq, Thierry Wirth, Vítor Borges, Brent Gilpin, Timothy J. Dallman, Joachim Frey A, Eelco Franz, Eva Møller Nielsen et al. · 2021 · Science Advances
76. Global spatial dynamics and vaccine-induced fitness changes of Bordetella pertussis
    Noémie Lefrancq, Valérie Bouchez, Nadia J. Fernandes, Alex‐Mikael Barkoff, Thijs Bosch, Tine Dalby, Thomas Åkerlund, Jessica Darenberg, Katerina Fabianova, Didrik Frimann Vestrheim et al. · 2022 · Science Translational Medicine
77. Nuclear phylogeny and insights into whole-genome duplications and reproductive development of Solanaceae plants
    Jie Huang, Weibin Xu, Junwen Zhai, Yi Hu, Jing Guo, Caifei Zhang, Yiyong Zhao, Lin Zhang, Christopher T. Martine, Hong Mā et al. · 2023 · Plant Communications
78. Phylodynamics and evolutionary epidemiology of African swine fever p72-CVR genes in Eurasia and Africa
    Moh A. Alkhamis, Carmina Gallardo, Cristina Jurado, Alejandro Soler, Marisa Arias, José Manuel Sánchez‐Vizcaíno · 2018 · PLoS ONE
79. Phylogenomic conflict resulting from ancient introgression following species diversification in Stewartia s.l. (Theaceae)
    Hanyang Lin, Ya-Jun Hao, Jianhua Li, Chengxin Fu, Pamela S. Soltis, Pamela S. Soltis, Yunpeng Zhao · 2019 · Molecular Phylogenetics and Evolution
80. Draft genome of the famous ornamental plant Paeonia suffruticosa
    Shuzuo Lv, Shu Cheng, Zhanying Wang, Shiming Li, Xin Jin, Lei Lan, Bing Yang, Kang Yu, Xuemei Ni, Ning Li et al. · 2020 · Ecology and Evolution
81. Ignoring Fossil Age Uncertainty Leads to Inaccurate Topology and Divergence Time Estimates in Time Calibrated Tree Inference
    Joëlle Barido‐Sottani, Nina van Tiel, Melanie Jane Hopkins, David F. Wright, Tanja Stadler, Rachel C. M. Warnock · 2020 · Frontiers in Ecology and Evolution
82. Secretory structures in plants: Lessons from the Plumbaginaceae on their origin, evolution and roles in stress tolerance
    Ana Delaunay Caperta, Ana Sofia Rõis, Generosa Teixeira, Pedro García‐Caparrós, T. J. Flowers · 2020 · Plant Cell & Environment
83. Elephant Genomes Reveal Accelerated Evolution in Mechanisms Underlying Disease Defenses
    Marc Tollis, Elliott Ferris, Michael S. Campbell, Valerie K. Harris, Shawn M. Rupp, Tara M. Harrison, Wendy K. Kiso, Dennis L. Schmitt, Michael M. Garner, Athena C. Aktipis et al. · 2021 · Molecular Biology and Evolution
84. Archival influenza virus genomes from Europe reveal genomic variability during the 1918 pandemic
    Livia Victoria Patrono, Bram Vrancken, Matthias Budt, Ariane Düx, Sébastian Lequime, Şengül Boral, Marcus Thomas P. Gilbert, Jan F. Gogarten, Luísa Hoffmann, David A. Horst et al. · 2022 · Nature Communications
85. Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1
    Joseph L.-H. Tsui, John T. McCrone, Ben Lambert, Sumali Bajaj, Rhys P. D. Inward, Paolo Bosetti, Rosario Evans Pena, Houriiyah Tegally, Verity Hill, Alexander E. Zarebski et al. · 2023 · Science
86. A Simulation-Based Evaluation of Tip-Dating Under the Fossilized Birth–Death Process
    Arong Luo, David Alejandro Duchêne, Chi Zhang, Chao‐Dong Zhu, Simon Y. W. Ho · 2019 · Systematic Biology
87. Specialized Predation Drives Aberrant Morphological Integration and Diversity in the Earliest Ants
    Phillip Barden, Vincent Perrichot, Bó Wáng · 2020 · Current Biology
88. Phylogenetic analysis of Middle-Late Miocene apes
    Kelsey D. Pugh · 2022 · Journal of Human Evolution
89. Impact and mitigation of sampling bias to determine viral spread: Evaluating discrete phylogeography through CTMC modeling and structured coalescent model approximations
    Maylis Layan, Nicola Felix Müller, Simon Dellicour, Nicola De Maio, Hervé Bourhy, Simon Cauchemez, Guy Baele · 2023 · Virus Evolution
90. Genomic characterization of highly pathogenic avian influenza A H5N1 virus newly emerged in dairy cattle
    Xiao Hu, Anugrah Saxena, Drew Robert Magstadt, Phillip Charles Gauger, Eric Ryan Burrough, Jianqiang Zhang, Chris L. Siepker, Marta Mainenti, Patrick J. Gorden, Paul Joseph Plummer et al. · 2024 · Emerging Microbes & Infections
91. Temporal patterns of diversification in Brassicaceae demonstrate decoupling of rate shifts and mesopolyploidization events
    Xiao‐Chen Huang, Dmitry A. German, Мarcus A. Koch · 2019 · Annals of Botany
92. An African origin for Mycobacterium bovis
    Chloé Loiseau, Fabrizio Menardo, Abraham Aseffa, Elena Hailu, Balako Gumi, Gobena Ameni, Stefan Berg, Leen Rigouts, Suelee Robbe‐Austerman, Jakob Zinsstag et al. · 2020 · Evolution Medicine and Public Health
93. Convergent Evolution of Cysteine-Rich Keratins in Hard Skin Appendages of Terrestrial Vertebrates
    Florian Ehrlich, Julia Lachner, Marcela Hermann, Erwin Tschachler, Leopold Eckhart · 2019 · Molecular Biology and Evolution
94. Outbreak dynamics of foodborne pathogen Vibrio parahaemolyticus over a seventeen year period implies hidden reservoirs
    Chao Yang, Yinghui Li, Min Jiang, Lei Wang, Yixiang Jiang, Lulu Hu, Xiaolu Shi, Lianhua He, Rui Cai, Shuang Wu et al. · 2022 · Nature Microbiology
95. Cross-species and mammal-to-mammal transmission of clade 2.3.4.4b highly pathogenic avian influenza A/H5N1 with PB2 adaptations
    Catalina Pardo‐Roa, Martha I. Nelson, Naomi Ariyama, Carolina Aguayo, Leonardo I. Almonacid, Ana Silvia Gonzalez-Reiche, Gabriela Muñoz, Mauricio Ulloa, Claudia Ávila, Carlos Navarro et al. · 2025 · Nature Communications
96. Integrating coalescent species delimitation with analysis of host specificity reveals extensive cryptic diversity despite minimal mitochondrial divergence in the malaria parasite genus Leucocytozoon
    Spencer C. Galen, Renato Nunes, Paul R. Sweet, Susan L. Perkins · 2018 · BMC Evolutionary Biology
97. Respiratory Selenite Reductase from Bacillus selenitireducens Strain MLS10
    Michael C. Wells, Jennifer M. McGarry, Maissa M. Gaye, Partha Basu, Ronald S. Oremland, John F. Stolz · 2019 · Journal of Bacteriology
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