Commentary: How to Report Instrumental Variable Analyses (Suggestions Welcome)
Abstract
Instrumental variable (IV) methods are becoming mainstream in comparative effectiveness research,1 but IV methods are radically different from traditional epidemiologic methods. The goal of IV methods is to eliminate confounding without ever measuring the confounders. This apparent miracle can be achieved only when four conditions are met (see below).2,3 Here we suggest a checklist for investigators who use IV methods. Like others before,4 we hope this step-by-step guide will improve the reporting of IV estimates and increase the transparency of the underlying assumptions. Our discussion focuses on reports of causal effects of medical interventions and is informed by two papers by Davies et al5,6 that appear in this issue of EPIDEMIOLOGY: an application that estimates the causal effects of cyclooxygenase-2 (COX-2) selective versus nonselective nonsteroidal anti-inflammatory drugs (NSAIDs), and a literature review of IV papers that describes their use, and perhaps misuse, in epidemiology. We supplement this review with additional information from our own review of IV analyses of observational studies with a relatively well-defined medical intervention. Details of our review can be found in the online supplement (https://links.lww.com/EDE/A664). IV methods require a variable—the “instrument”—that meets the three so-called instrumental conditions: (1) the instrument is associated with the treatment, (2) the instrument does not affect the outcome except through treatment (also known as the exclusion restriction assumption), and (3) the instrument does not share any causes with the outcome. An example of such an instrument is the randomization indicator in double-blind randomized experiments.2 Davies et al6 summarize instruments that have been proposed in epidemiologic studies, including the physician preference type they use themselves.5 Unfortunately, no variable can be proved to be an instrument in observational studies because only condition (1) can be empirically verified. We outline some steps for reporting IV analyses based on the variables proposed as instruments (Figure) and discuss how these steps have been reported in previous studies (Table). A detailed specification of how IV methods should be implemented is beyond the scope of this commentary.FIGURE: Flowchart for reporting of IV analyses with a single, non–time-varying, dichotomous instrument.TABLE: Proportions Reporting According to Suggested Guidelines in a Review of IV Publications Assessing Effects of Medical Interventions (n = 81)The first step in our reporting flowchart is to empirically verify condition (1). When the association between the proposed instrument and the treatment is weak, the proposed “weak” instrument may amplify biases due to small violations of conditions (2) or (3), producing very biased effect estimates.7,8 Alternatively, if the proposed instrument is very strong, it may be more likely to violate conditions (2) or (3); in the extreme, a perfect correlation between the proposed instrument and the observational treatment implies the proposed instrument is associated with the same set of (possibly unmeasured) confounders as the treatment.9 Most prior studies have evaluated the strength of their proposed instrument via risk differences, odds ratios, or partial R2 or F statistics like Davies et al5 did and several authors have recommended.6,8 (In contrast, the use of R2 or F statistics as effect measures is subject to many study-specific artifacts and should generally be avoided.10,11) Unlike condition (1), conditions (2) and (3) are not empirically verifiable: they are assumptions. Therefore, the next step is to use subject-matter knowledge to build a case for why the proposed instrument may be reasonably assumed to meet each of these two conditions; this is similar to how one would use subject-matter knowledge to justify the no unmeasured confounding assumption of traditional methods. When dichotomizing a polytomous or continuous treatment, condition (2) may hold for the original treatment, but not for its dichotomous version. Investigators can provide some support for condition (3) by showing the proposed instrument is not associated with measured confounders.6 Although any associations found with measured covariates could be adjusted for by modeling (see below), associations with measured confounders may raise concerns over associations with unmeasured confounders. Davies et al5 provide arguments to support conditions (2) and (3) when physician’s preference is proposed as an instrument; other authors have provided counterarguments.2 In our review, we notice a tendency for conditions (2) and (3) to be treated as a single condition. Although these conditions are statistically similar, it is important to consider them separately in order to incorporate subject-matter knowledge in discussions about their validity and in decisions on adjustment. For example, Davies et al5 found some evidence that the proposed instrument is ass
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Instrumental variable methods have not yet been widely used to evaluate public health interventions because it can be difficult to find suitable instruments and to demonstrate convincingly, using theory or data, that they meet the second and third conditions.
“IV methods have not yet been widely used to evaluate public health interventions because it can be difficult to find suitable instruments and to demonstrate convincingly, using theory or data, that they meet the second and third conditions above (35, 71).”
From Natural Experiments: An Overview of Methods, Approaches, and Contributions to Public Health Intervention Research (2017) · cites this paper as [71]
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Think Globally, Act Globally: An Epidemiologist’s Perspective on Instrumental Variable Estimation
Swanson, S. A., & Hernán, M. Á. (2014) · Statistical Science · doi:10.1214/14-sts491 · Cited by 37 · see citing works
“Consider one of the most commonly proposed instruments in epidemiologic research, physician or facility prescribing preference (Swanson and Hernán, 2013).”
BackgroundInfluentialSelf-citationSwanson, S. A., Hernández–Dı́az, S., Palmsten, K. K., Mogun, H., Olfson, M., & Huybrechts, K. F. (2015) · Pharmacoepidemiology and Drug Safety · doi:10.1002/pds.3798 · Cited by 37 · see citing works
Self-citationPiske, M., Thomson, T. J., Krebs, E., Hongdilokkul, N., Bruneau, J., Greenland, S., Gustafson, P., Karim, M. E., McCandless, L. C., Maclure, M., et al. (2020) · BMJ Open · doi:10.1136/bmjopen-2019-036102 · Cited by 36 · see citing works
“74 We will also consider alternative empirical approaches for assessing conditions 2 and 3, consistent with recommendations of Glymour et al. 75 The use of IVs is controversial, in part because conditions (2) and (3) listed above are not explicitly testable for unmeasured confounders.”
BackgroundMethodInfluentialKang, H., Kreuels, B., May, J., & Small, D. S. (2016) · The Annals of Applied Statistics · doi:10.1214/15-aoas894 · Cited by 33 · see citing works
“…of an exposure on the outcome when there is unmeasured confounding, provided that a valid instrument is available [Angrist, Imbens and Rubin (1996), Baiocchi, Cheng and Small (2014), Brookhart and Schneeweiss (2007), Cheng, Qin and Zhang (2009), Hernán and Robins (2006), Swanson and Hernán (2013)].”
BackgroundMethodCross-sectional studies: strengths, limitations, and methodological considerations
Baumeister, S., Kocher, T., Papapanou, P. N., Holtfreter, B., & Demmer, R. T. (2026) · Journal of Periodontal Research · doi:10.1111/jre.70063 · Cited by 38 · see citing works
Viinikainen, J., Bryson, A., Böckerman, P., Elovainio, M. J., Pitkänen, N., Pulkki-Råbäck, L., Lehtimäki, T. J., Raitakari, O. T., & Pehkonen, J. (2018) · Preventive Medicine · doi:10.1016/j.ypmed.2018.08.026 · Cited by 32 · see citing works
“Fourth, the local average treatment effect (LATE) identified by IV estimation captures the average effect of education on depressive symptoms among compliers (Swanson and Hernán, 2013) i.”
BackgroundMody, A., Sikazwe, I. T., Czaicki, N. L., Mwanza, M. W., Savory, T., Sikombe, K., Beres, L. K., Somwe, P., Roy, M., Pry, J. M., et al. (2018) · PLoS Medicine · doi:10.1371/journal.pmed.1002574 · Cited by 31 · see citing works
“Under the aforementioned conditions, this method estimates the causal effect of ART initiation on retention in care in those patients who initiated ART in response to the change in guidelines—commonly referred to as the local average treatment effect (LATE) [25,32,33].”
BackgroundMethodBershteyn, A., Odeny, T., Lyamuya, R., Nakiwogga-Muwanga, A., Diero, L. O., Bwana, M., Braitstein, P. K. A., Somi, G. R., Kambugu, A. D., Bukusi, E. A., et al. (2017) · Clinical Infectious Diseases · doi:10.1093/cid/cix191 · Cited by 29 · see citing works
Are All Biases Missing Data Problems?
Howe, C. J., Cain, L. E., & Hogan, J. W. (2015) · Current Epidemiology Reports · doi:10.1007/s40471-015-0050-8 · Cited by 28 · see citing works
Lor, G. C. Y., Risch, H. A., Fung, W. T., Au Yeung, S. L., Wong, I. O. L., Zheng, W., & Pang, H. (2019) · Cancer Epidemiology · doi:10.1016/j.canep.2019.101577 · Cited by 27 · see citing works
Estimating the Effect of School Water, Sanitation, and Hygiene Improvements on Pupil Health Outcomes
Garn, J. V., Brumback, B., Drews‐Botsch, C., Lash, T. L., Kramer, M. R., & Freeman, M. C. (2016) · Epidemiology · doi:10.1097/ede.0000000000000522 · Cited by 26 · see citing works
“% with diarrheab (SD) 9% (28) 4% (21) 8% (27) 4% (19) 9% (29)”
Instrumental Variable Analyses in Pharmacoepidemiology: What Target Trials Do We Emulate?
Swanson, S. A. (2017) · Current Epidemiology Reports · doi:10.1007/s40471-017-0120-1 · Cited by 24 · see citing works
Self-citationIntroduction to Mendelian randomization
Yeung, S. L. A., Luo, S., Iwagami, M., & Goto, A. (2024) · Annals of Clinical Epidemiology · doi:10.37737/ace.25004 · Cited by 24 · see citing works
An Instrumental Variables Design for the Effect of Emergency General Surgery
Keele, L. J., Sharoky, C. E., Sellers, M. M., Wirtalla, C. J., & Kelz, R. R. (2018) · Epidemiologic Methods · doi:10.1515/em-2017-0012 · Cited by 22 · see citing works
“Following the recommendation in Swanson and Hernán (2013), we report nonparametric bounds for the IV estimate (Balke and Pearl 1997).”
MethodPatorno, E., Schneeweiß, S., & Wang, S. V. (2020) · Diabetes Obesity and Metabolism · doi:10.1111/dom.13918 · Cited by 22 · see citing works
“39,40 For all RWE studies conducted using RWD, the statistical software programs, packages or platforms used in cohort extraction and analysis should be reported (Table 2D).”
Tian, H., & Burgess, S. (2022) · International Journal of Epidemiology · doi:10.1093/ije/dyac240 · Cited by 21 · see citing works
Mendelian randomisation approaches to the study of prenatal exposures: A systematic review
Diemer, E. W., Labrecque, J. A., Neumann, A., Tiemeier, H., & Swanson, S. A. (2021) · Paediatric and Perinatal Epidemiology · doi:10.1111/ppe.12691 · Cited by 21 · see citing works
“As guidelines for MR suggest that the key conditions need to be assessed on a case-by-case basis relative to the study design and research question, 12,17-20 and prenatal MR studies present several unique challenges relative to other types of MR designs, 21,22 it is important to understand how…”
Self-citationEffect of Pharmacological Treatment of Attention-Deficit/Hyperactivity Disorder on Criminality
Widding‐Havneraas, T., Zachrisson, H. D., Markussen, S., Elwert, F., Lyhmann, I., Chaulagain, A., Bjelland, I., Halmøy, A., Rypdal, K., & Mykletun, A. (2023) · Journal of the American Academy of Child & Adolescent Psychiatry · doi:10.1016/j.jaac.2023.05.025 · Cited by 21 · see citing works
Taylor, M. R., Rode, L., Bjørngaard, J. H., Taylor, A. E., Bojesen, S. E., Åsvold, B. O., Gabrielsen, M. E., Lewis, G., Nordestgaard, B. G., Romundstad, P., et al. (2018) · International Journal of Epidemiology · doi:10.1093/ije/dyy027 · Cited by 21 · see citing works
“The Instrumental Variable Checklist(51) (Supplementary Table 3, available as Supplementary Data at IJE online) was used for MR analysis and the instrumental variable flow chart considered throughout analyses and reporting.(52)”
Osypuk, T. L., Schmidt, N. M., Kehm, R. D., Tchetgen, E. J. T., & Glymour, M. M. (2018) · Social Psychiatry and Psychiatric Epidemiology · doi:10.1007/s00127-018-1592-0 · Cited by 21 · see citing works
Evaluating a Key Instrumental Variable Assumption Using Randomization Tests
Branson, Z., & Keele, L. J. (2020) · American Journal of Epidemiology · doi:10.1093/aje/kwaa089 · Cited by 21 · see citing works
“Alternatively, bias in covariates from an IV can be compared to bias from an intention-to-treat analysis.4 Jackson and Swanson13 outlined a method of graphical display for easy bias comparisons, and Davies et al.14,15 suggest using formal statistical tests to compare the bias associated with the IV…”
MethodComparative Effectiveness of Oxaliplatin Versus 5-flourouricil in Older Adults
Mack, C. D., Brookhart, M. A., Glynn, R. J., Meyer, A. M., Carpenter, W. R., Sandler, R. S., & Stürmer, T. (2015) · Epidemiology · doi:10.1097/ede.0000000000000355 · Cited by 20 · see citing works
Diemer, E. W., Labrecque, J., Tiemeier, H., & Swanson, S. A. (2020) · Epidemiology · doi:10.1097/ede.0000000000001126 · Cited by 19 · see citing works
Self-citationGuidelines for estimating causal effects in pragmatic randomized trialsPreprint
Murray, E. J., Swanson, S. A., & Hernán, M. Á. (2019) · arXiv (Cornell University) · doi:10.48550/arxiv.1911.06030 · Cited by 26 · see citing works
Self-citationLack of Identification in Semiparametric Instrumental Variable Models With Binary Outcomes
Burgess, S., Granell, R., Palmer, T., Sterne, J. A. C., & Didelez, V. (2014) · American Journal of Epidemiology · doi:10.1093/aje/kwu107 · Cited by 18 · see citing works
“If investigators discover lack of identification in an applied context, they should consider not providing a point estimate for the causal effect and simply reporting the test for association between the IV and the outcome to establish a causal effect of the exposure on the outcome (which should be reported in any cas…”
BackgroundIslam, S. N., Ahammed, T., Anjum, A., Albalawi, O., & Uddin, M. J. (2022) · BMC Medical Research Methodology · doi:10.1186/s12874-022-01504-0 · Cited by 15 · see citing works
“For example, the homogeneity assumption (4 h) for estimating the Average Treatment Effect (ATE) and the monotonicity assumption (4 m) for estimating the Local Average Treatment Effect (LATE) is needed to be theoretically justifiable [5, 18, 31].”
BackgroundMethodInfluentialQuantitative Falsification of Instrumental Variables Assumption Using Balance Measures
Ali, M. S., Uddin, M. J., Groenwold, R. H. H., Pestman, W. R., Belitser, S. V., Hoes, A. W., de Boer, A., Roes, K. C. B., & Klungel, O. H. (2014) · Epidemiology · doi:10.1097/ede.0000000000000152 · Cited by 16 · see citing works
Bornioli, A., Vermeulen, S., van Haaren, J., Valente, R., & Mingardo, G. (2022) · Sustainability · doi:10.3390/su14031157 · Cited by 16 · see citing works
“The method employs an “instrument” variable that fulfils three conditions [37,38]: (1) it is associated with the regressor variable (tourism pressure); (2) it does not affect the dependent variable, except through the independent variable; and (3) it does not have causes shared with the dependent variable.”
BackgroundMethodSwanson, S. A. (2016) · Epidemiology · doi:10.1097/ede.0000000000000558 · Cited by 16 · see citing works
Self-citationKeele, L. J., Harris, S. K., Pimentel, S. D., & Grieve, R. (2018) · Journal of the Royal Statistical Society Series A (Statistics in Society) · doi:10.1111/rssa.12437 · Cited by 15 · see citing works
Burgess, S., & Small, D. S. (2016) · Journal of Causal Inference · doi:10.1515/jci-2015-0024 · Cited by 16 · see citing works
Beres, L. K., Mody, A., Sikombe, K., Nicholas, L. H., Schwartz, S., Eshun‐Wilson, I., Somwe, P., Simbeza, S., Pry, J. M., Kaumba, P. C., et al. (2021) · Journal of the International AIDS Society · doi:10.1002/jia2.25853 · Cited by 14 · see citing works
Graphical Diagnosis of Confounding Bias in Instrumental Variable Analysis
Zhao, Q., & Small, D. S. (2018) · Epidemiology · doi:10.1097/ede.0000000000000822 · Cited by 14 · see citing works
Quality of Care in Chronic Kidney Disease and Incidence of End-stage Renal Disease in Older Patients
Fukuma, S., Ikenoue, T., Shimizu, S., Norton, E. C., Saran, R., Yanagita, M., Kato, G., Nakayama, T., & Fukuhara, S. (2020) · Medical Care · doi:10.1097/mlr.0000000000001301 · Cited by 13 · see citing works
Schaffer, J. M., Kluis, A., Squiers, J. J., George, T. J., Shih, E., Banwait, J. K., Mack, M. J., & DiMaio, J. M. (2025) · The Annals of Thoracic Surgery · doi:10.1016/j.athoracsur.2025.03.044 · Cited by 14 · see citing works
Mandaviya, P. R., Joehanes, R., Aïssi, D., Kühnel, B., Marioni, R. E., Trương, V., Stolk, L., Beekman, M., Bonder, M. J., Franke, L., et al. (2017) · PLoS ONE · doi:10.1371/journal.pone.0182472 · Cited by 13 · see citing works
“Although assumptions one and two are satisfied in our case [5], the GRS model might violate assumption three [37, 38].”
BackgroundUddin, M. J., Groenwold, R. H. H., de Boer, A., Afonso, A. S. M., Primatesta, P., Becker, C., Belitser, S. V., Hoes, A. W., Roes, K. C. B., & Klungel, O. H. (2016) · Pharmacoepidemiology and Drug Safety · doi:10.1002/pds.3860 · Cited by 13 · see citing works
Comparative effectiveness research methodology using secondary data: A starting user’s guide
Sun, M., & Lipsitz, S. R. (2017) · Urologic Oncology Seminars and Original Investigations · doi:10.1016/j.urolonc.2017.10.011 · Cited by 13 · see citing works
Methodological Challenges When Studying Distance to Care as an Exposure in Health Research
Caniglia, E. C., Zash, R., Swanson, S. A., Wirth, K. E., Diseko, M., Mayondi, G. K., Lockman, S., Mmalane, M. O., Makhema, J. M., Dryden‐Peterson, S., et al. (2019) · American Journal of Epidemiology · doi:10.1093/aje/kwz121 · Cited by 13 · see citing works
Self-citationHomayra, F., Hongdilokkul, N., Piske, M., Pearce, L. A., Zhou, H., Min, J. E., Krebs, E., & Nosyk, B. (2019) · Drug and Alcohol Dependence · doi:10.1016/j.drugalcdep.2019.107798 · Cited by 13 · see citing works
Framing Causal Questions in Life Course Epidemiology
Stavola, B. L. D., Herle, M., & Pickles, A. R. (2021) · Annual Review of Statistics and Its Application · doi:10.1146/annurev-statistics-040120-024748 · Cited by 12 · see citing works
Keele, L. J., Harris, S. K., & Grieve, R. (2019) · Medical Care · doi:10.1097/mlr.0000000000001093 · Cited by 12 · see citing works
Gokhale, M., Buse, J. B., Mack, C. D., Funk, M. J., Lund, J. L., Simpson, R. J., & Stürmer, T. (2018) · Pharmacoepidemiology and Drug Safety · doi:10.1002/pds.4578 · Cited by 12 · see citing works
“It is often conservatively suggested to avoid IV methods when the assumptions are likely to be violated because relatively minor violations of the assumptions may lead to large biases.(14) This can be particularly problematic when there is no valid comparison analytic method.”
Using Counterfactual Worlds to Triangulate Evidence in the Real World
Labrecque, J. A., & Swanson, S. A. (2023) · Current Epidemiology Reports · doi:10.1007/s40471-023-00340-0 · Cited by 11 · see citing works
Self-citationJaschke, P., Keita, S., Vallizadeh, E., & Kühne, S. (2023) · PLoS ONE · doi:10.1371/journal.pone.0281893 · Cited by 11 · see citing works
Physician’s Preference-based Instrumental Variable Analysis
Boef, A. G. C., van Paassen, J., Arbous, M. S., Middelkoop, A., Vandenbroucke, J. P., le Cessie, S., & Dekkers, O. M. (2014) · Epidemiology · doi:10.1097/ede.0000000000000151 · Cited by 11 · see citing works
“Heart failure 18 (17) 9 (11) 19 (21) 14 (15) 9 (10)”
Lyhmann, I., Widding‐Havneraas, T., Bjelland, I., Markussen, S., Elwert, F., Chaulagain, A., Mykletun, A., & Halmøy, A. (2024) · BMJ Mental Health · doi:10.1136/bmjment-2024-301003 · Cited by 10 · see citing works
“17 22–24 SEs in all models were clustered at the clinic level, and we report 95% CIs.”
BackgroundChang, C., Lin, J., Hsu, J., Wu, L., & Lai, M. (2016) · Scientific Reports · doi:10.1038/srep37177 · Cited by 10 · see citing works
- Authors
- Swanson, S. A., & Hernán, M. A.
- Affiliations
- Harvard University (US)
- Corresponding author
- Swanson, Sonja A.
- ORCID
- Swanson, Sonja A.
- Venue
- Epidemiology
- Published
- 2013-05
- Volume
- 24
- Issue
- 3
- Pages
- 370-374
- ISSN
- 1044-3983 (ISSN-L)
- OpenAlex
- W2330290021
- Cited by
- 197
- References
- 30
- Citations by year
- 2026: 8 · 2025: 15 · 2024: 15 · 2023: 12 · 2022: 23 · 2021: 14 · 2020: 9 · 2019: 18 · 2018: 16 · 2017: 15 · 2016: 19 · 2015: 21 · 2014: 10 · 2013: 1
- FWCI
- 14.82
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Epidemiology (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Physical Sciences › Mathematics › Statistics and Probability › Advanced Causal Inference Techniques
- Social Sciences › Decision Sciences › Statistics, Probability and Uncertainty › Meta-analysis and systematic reviews
- Physical Sciences › Mathematics › Statistics and Probability › Statistical Methods in Epidemiology
- Keywords
- instrumental variables, reporting guidelines, confounding, exclusion restriction, weak instruments, reporting checklist, observational studies, medical interventions, COX-2 inhibitors, nonsteroidal anti-inflammatory drugs, causal effect estimation
- MeSH terms
- Data Interpretation, Statistical, Female, Gastrointestinal Diseases, Humans, Male, Myocardial Infarction, Models, Statistical, Epidemiologic Research Design, Causality, Confounding Factors, Epidemiologic, Cyclooxygenase 2 Inhibitors, Research Report
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