Selection Bias When Estimating Average Treatment Effects Using One-sample Instrumental Variable Analysis
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Abstract
Participants in epidemiologic and genetic studies are rarely true random samples of the populations they are intended to represent, and both known and unknown factors can influence participation in a study (known as selection into a study). The circumstances in which selection causes bias in an instrumental variable (IV) analysis are not widely understood by practitioners of IV analyses. We use directed acyclic graphs (DAGs) to depict assumptions about the selection mechanism (factors affecting selection) and show how DAGs can be used to determine when a two-stage least squares IV analysis is biased by different selection mechanisms. Through simulations, we show that selection can result in a biased IV estimate with substantial confidence interval (CI) undercoverage, and the level of bias can differ between instrument strengths, a linear and nonlinear exposure–instrument association, and a causal and noncausal exposure effect. We present an application from the UK Biobank study, which is known to be a selected sample of the general population. Of interest was the causal effect of staying in school at least 1 extra year on the decision to smoke. Based on 22,138 participants, the two-stage least squares exposure estimates were very different between the IV analysis ignoring selection and the IV analysis which adjusted for selection (e.g., risk differences, 1.8% [95% CI, −1.5%, 5.0%] and −4.5% [95% CI, −6.6%, −2.4%], respectively). We conclude that selection bias can have a major effect on an IV analysis, and further research is needed on how to conduct sensitivity analyses when selection depends on unmeasured data.
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A final important source of bias in MR, and indeed all studies of observational data, is selection bias.
“A final important source of bias in MR, and indeed all studies of observational data, is selection bias.64,65”
From Mendelian randomization (2022) · cites this paper as [64]
Selection bias can arise in MR studies if an individual's exposure and outcome values affect their participation.
“Another type of bias that can arise in MR studies that cannot be easily corrected for is selection bias64 In an MR study, an example of selection bias would be if an individual’s exposure and outcome values affected their participation.57”
From Mendelian randomization (2022) · cites this paper as [64]
Case-only study designs may be severely compromised by collider bias, which must be taken into account in data analysis.
“Importantly, case-only study designs may be severely compromised by collider bias[[G] 56,64, which must be taken into account in data analysis185.”
From Mendelian randomization (2022) · cites this paper as [64]
Population structure can give rise to genetic associations due to differences in the frequency of a variant and the distribution of a trait across the population.
“Population structure can give rise to genetic associations due to differences in the frequency of a variant and the distribution of a trait across the population (such as latitude in Europe, which correlates with allele frequencies for lactase persistence variants and milk consumption 49 ).”
From Guidelines for performing Mendelian randomization investigations (2020) · cites this paper as [49]
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Additional file 1 of Adiposity and grip strength: a Mendelian randomisation study in UK Biobank
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Additional file 2 of Adiposity and grip strength: a Mendelian randomisation study in UK Biobank
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Gousia, K., Nizalova, O. Y., Mališauskaitė, G., & Teo, H. (2026) · Social Science & Medicine · doi:10.1016/j.socscimed.2026.119955
- Authors
- Hughes, R. A., Davies, N. M., Davey Smith, G., & Tilling, K.
- Affiliations
- University of Bristol (GB)
- Population Health Sciences, Bristol Medical School, University of Bristol, Bristol, United Kingdom
- Corresponding author
- Hughes, Rachael A.
- Venue
- Epidemiology
- Published
- 2019-05
- Volume
- 30
- Issue
- 3
- Pages
- 350-357
- ISSN
- 1044-3983 (ISSN-L)
- PMC
- PMC6525095
- OpenAlex
- W2897719756
- Cited by
- 89
- References
- 45
- Citations by year
- 2026: 6 · 2025: 4 · 2024: 11 · 2023: 10 · 2022: 20 · 2021: 14 · 2020: 9 · 2019: 12 · 2018: 2 · 2017: 1
- FWCI
- 10.90
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Locations
- Epidemiology (publishedVersion, cc-by)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Bristol Research (University of Bristol) (publishedVersion, cc-by)
- Funders
- Wellcome Trust
- University of Bristol
- Elizabeth Blackwell Institute for Health Research, University of Bristol
- Medical Research Council (MC_UU_00011/3, MC_UU_00011/1)
- Economic and Social Research Council (ES/N000757/1)
- Topics
- Physical Sciences › Mathematics › Statistics and Probability › Advanced Causal Inference Techniques
- Physical Sciences › Mathematics › Statistics and Probability › Statistical Methods in Epidemiology
- Social Sciences › Decision Sciences › Statistics, Probability and Uncertainty › Meta-analysis and systematic reviews
- Keywords
- selection bias, instrumental variables, two-stage least squares, directed acyclic graphs, research participation, causal effect estimation, UK Biobank, school attendance, smoking initiation, sensitivity analysis
- MeSH terms
- Epidemiologic Methods, Humans, Selection Bias, Causality, Confounding Factors, Epidemiologic, Treatment Outcome
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