PreprintCited by 62Genomics and Chromatin DynamicsEpigenetics and DNA MethylationChromatin Remodeling and Cancer

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DAXX adds a de novo H3.3K9me3 deposition pathway to the histone chaperone network

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Preprint — published as 10.1016/j.molcel.2023.02.009

Abstract

SUMMARY: A multitude of histone chaperones are required to protect histones after their biosynthesis until DNA deposition. They cooperate through the formation of co-chaperone complexes, but the crosstalk between nucleosome assembly pathways remains enigmatic. Using explorative interactomics approaches, we characterize the organization of the histone H3–H4 chaperones network and define the interplay between histone chaperone systems. We identify and validate several novel histone dependent complexes and predict the structure of the ASF1 and SPT2 co-chaperone complex, expanding the role of ASF1 in histone dynamics. We show that DAXX acts separately from the rest of the network, recruiting heterochromatin factors and promoting lysine 9 tri-methylation of new histone H3.3 prior to deposition onto DNA. With its functionality, DAXX provides a molecular mechanism for de novo heterochromatin assembly. Collectively, our findings provide a new framework for understanding how cells orchestrate histone supply and comply with chromatin dynamics throughout the cell cycle.

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Research works printed but not linked: 117

  1. 10.1093/molbev/mst086 · DOI
  2. 10.1038/nrm.2017.119 · DOI
  3. 10.1016/j.molcel.2010.01.037 · DOI
  4. 10.15252/embj.201798714 · DOI
  5. 10.1093/nar/gkac303 · DOI
  6. 10.1083/jcb.201012017 · DOI
  7. 10.3390/jcm9030736 · DOI
  8. 10.1093/nar/gkw892 · DOI
  9. 10.1093/nar/gkv1372 · DOI
  10. 10.1016/j.molcel.2011.01.025 · DOI
  11. 10.1038/nsmb.1911 · DOI
  12. 10.1038/cddis.2014.337 · DOI
  13. 10.1101/gad.261115.115 · DOI
  14. 10.1074/jbc.M111.248534 · DOI
  15. 10.1128/JVI.01575-08 · DOI
  16. 10.1371/journal.ppat.1007313 · DOI
  17. 10.1083/jcb.147.6.1167 · DOI
  18. 10.1016/j.molcel.2011.11.021 · DOI
  19. 10.1093/nar/gkaa828 · DOI
  20. 10.1074/mcp.M113.031591 · DOI · Paper page
  21. 10.1126/science.abm5320 · DOI
  22. 10.1093/nar/gku090 · DOI
  23. 10.1101/gad.566910 · DOI
  24. 10.1016/j.cell.2009.02.040 · DOI
  25. 10.1101/cshperspect.a026567 · DOI
  26. 10.1038/nature11608 · DOI
  27. 10.1038/nature14345 · DOI
  28. 10.1016/j.cell.2006.08.047 · DOI
  29. 10.1074/jbc.M111.231647 · DOI
  30. Evans, R. , O’Neill, M. , Pritzel, A. , Antropova, N. , Senior, A. , Green, T. , Žídek, A. , Bates, R. , Blackwell, S. , Yim, J. , et al. (2021). Protein complex prediction with AlphaFold-Multimer. Cold Spring Harbor Laboratory. · DOI · Paper page
  31. 10.1093/glycob/11.3.19R · DOI
  32. 10.1016/j.cell.2009.02.039 · DOI
  33. 10.1128/mcb.00597-16 · DOI
  34. 10.1016/j.devcel.2006.11.002 · DOI
  35. 10.1016/j.molcel.2018.09.001 · DOI
  36. 10.1016/j.cell.2010.01.003 · DOI
  37. 10.1038/s41467-021-26288-7 · DOI
  38. 10.1126/science.1148992 · DOI
  39. 10.1016/j.molcel.2004.12.018 · DOI
  40. 10.1146/annurev-genet-120417-031547 · DOI
  41. 10.1038/nrdp.2017.65 · DOI · Paper page
  42. 10.1016/j.molcel.2021.03.041 · DOI
  43. 10.1038/nrm.2016.159 · DOI
  44. 10.1093/nar/gkw209 · DOI
  45. 10.1038/cr.2011.32 · DOI · Paper page
  46. 10.1016/j.stem.2015.07.022 · DOI
  47. 10.1038/nchembio.2463 · DOI
  48. 10.1038/nsmb.2890 · DOI
  49. 10.1038/s41467-018-04957-4 · DOI
  50. 10.1038/s41467-017-01206-y · DOI
  51. 10.15252/embj.2021108307 · DOI
  52. 10.1242/jcs.115.16.3319 · DOI
  53. 10.1093/nar/gkab1296 · DOI
  54. 10.1101/gad.2045111 · DOI
  55. 10.1038/nsmb.3055 · DOI
  56. Ichihara, S. , Nagao, K. , Sakaguchi, T. , Obuse, C. , and Sado, T. (2021). SmcHD1 underlies the formation of H3K9me3 blocks on the inactive X chromosome in mice. preprint Genetics. 2021/08/23/. http://biorxiv.org/lookup/doi/10.1101/2021.08.23.457321. · DOI
  57. 10.1083/jcb.147.2.221 · DOI
  58. 10.1016/j.molcel.2007.11.012 · DOI · Paper page
  59. 10.1016/j.molcel.2010.01.033 · DOI
  60. 10.1186/s13072-016-0064-6 · DOI
  61. 10.1016/j.bbrc.2018.03.101 · DOI
  62. 10.1038/nrm.2017.47 · DOI · Paper page
  63. 10.1016/j.bbrc.2005.04.016 · DOI
  64. 10.1016/j.molcel.2017.08.021 · DOI
  65. 10.1073/pnas.1008850107 · DOI
  66. 10.1016/j.molcel.2006.10.019 · DOI
  67. 10.1016/j.molcel.2021.04.001 · DOI
  68. 10.1016/j.molcel.2006.08.019 · DOI
  69. 10.1038/embor.2009.90 · DOI
  70. 10.1038/38444 · DOI · Paper page
  71. 10.1016/j.devcel.2014.09.001 · DOI
  72. 10.1038/s41580-020-0262-8 · DOI · Paper page
  73. 10.1016/j.bbagrm.2013.11.008 · DOI
  74. 10.1038/nsmb.2242 · DOI
  75. 10.1038/s41556-019-0282-9 · DOI
  76. 10.1038/nature05613 · DOI
  77. 10.1016/j.gde.2019.04.013 · DOI · Paper page
  78. 10.1038/nsmb.2532 · DOI
  79. 10.1111/j.1365-2443.2009.01361.x · DOI
  80. 10.1242/jcs.112623 · DOI
  81. 10.1038/s41586-018-0153-8 · DOI
  82. 10.1038/s41580-022-00483-w · DOI
  83. 10.1038/s41467-019-12019-6 · DOI
  84. Pardal, A.J. , and Bowman, A.J. (2021). Nuclear import and chaperoning of monomeric histones H3 and H4 is mediated by Imp5, NASP and the HAT1 complex. bioRxiv. 2021/10/20/. https://www.biorxiv.org/content/10.1101/2021.10.19.464968v1files/1769/2021.10.19.html. · DOI
  85. 10.1042/EBC20180055 · DOI
  86. 10.1093/nar/gky923 · DOI
  87. 10.1126/science.aau0294 · DOI · Paper page
  88. 10.1002/pro.3943 · DOI
  89. 10.1016/j.cell.2012.06.048 · DOI
  90. 10.1002/mas.21540 · DOI
  91. 10.1038/s41577-022-00707-2 · DOI · Paper page
  92. 10.1038/nrm.2016.162 · DOI
  93. 10.1021/ac026117i · DOI
  94. 10.1038/ncomms8711 · DOI
  95. 10.1093/nar/gkv929 · DOI
  96. 10.15252/embr.201439937 · DOI
  97. 10.1111/febs.14712 · DOI
  98. 10.1038/nature18312 · DOI
  99. 10.1128/JVI.00425-13 · DOI
  100. 10.1101/gad.973302 · DOI · Paper page
  101. 10.1016/j.molcel.2006.03.014 · DOI
  102. 10.1038/s41586-019-1167-6 · DOI
  103. 10.1073/pnas.92.4.1237 · DOI
  104. 10.1038/s41556-020-0487-y · DOI
  105. 10.1016/S0092-8674(03)01064-X · DOI
  106. 10.2183/pjab.85.12 · DOI · Paper page
  107. 10.1016/j.jbc.2022.101979 · DOI
  108. 10.1038/nsmb1147 · DOI
  109. 10.1038/s41467-021-24206-5 · DOI
  110. 10.1038/s41594-020-0492-7 · DOI
  111. 10.1128/JVI.01895-14 · DOI
  112. 10.1038/s41579-020-0382-3 · DOI
  113. 10.1016/S0960-9822(98)70040-5 · DOI
  114. 10.1016/j.celrep.2015.03.036 · DOI
  115. 10.1038/s41586-021-04200-z · DOI
  116. 10.1038/ng.3883 · DOI
  117. 10.1038/nsmb.1416 · DOI

Metadata

Authors
Carraro, M., Hendriks, I. A., Hammond, C. M., Solis, V., Völker-Albert, M., Elsborg, J. D., Weisser, M. B., Spanos, C., Montoya, G., Rappsilber, J., Imhof, A., Nielsen, M. L., & Groth, A.
Affiliations
  • University of Copenhagen (DK)
  • Wellcome Centre for Cell Biology (GB)
  • Ludwig-Maximilians-Universität München (DE)
Corresponding author
  • Hammond, Colin M.
  • Nielsen, Michael L.
  • Groth, Anja
Venue
Molecular Cell
Publisher
openRxiv
Published
2022-09-20
Volume
83
Issue
7
Pages
1075-1092.e9
ISSN
1097-2765 (ISSN-L)
OpenAlex
W4322775905
Cited by
62
References
1
Citations by year
2026: 16 · 2025: 11 · 2024: 22 · 2023: 13
FWCI
5.52
Type
journal article
Language
en
Open access
Licence
cc-by
Locations
  • Molecular Cell (publishedVersion, cc-by)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • Research at the University of Copenhagen (University of Copenhagen) (publishedVersion, cc-by)
  • Edinburgh Research Explorer (University of Edinburgh) (submittedVersion, cc-by)
Funders
  • Kræftens Bekæmpelse (R146-A9159, R146-A9159-16-S2)
  • Wellcome Trust (823839, 203149)
  • European Commission (823839, HORIZON2020)
  • Deutsche Forschungsgemeinschaft (213249687, CRC 1064, 203149, 325871075, NNF0024386, NNF17SA00302140, CRC1309, NNF18OC0055061)
  • Københavns Universitet
  • Lundbeckfonden (R198-2015-269, NNF14CC0001, 724436, R313-2019-448, 7016-00042B)
  • Novo Nordisk (NNF14CC0001, NNF18OC0055061)
  • Novo Nordisk Fonden (NNF 14CC0001, NNF0024386, NNF18OC0055061, NNF21OC0067425)
  • Danmarks Frie Forskningsfond (0135-00096B, 8020-00220B)
  • H. Lundbeck A/S
  • Horizon 2020 Framework Programme
  • European Research Council
  • Horizon 2020 (EPIC-XS-823839)
  • H2020 European Research Council (724436)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Chromatin Remodeling and Cancer
Keywords
DAXX, histone chaperone, histone H3.3, H3K9me3, histone methyltransferase, Asf1, histone deposition, heterochromatin assembly, nucleosome assembly, histone dynamics, chromatin modification
MeSH terms
DNA, Histones, Humans, Nucleosomes, Cell Cycle Proteins, Molecular Chaperones, Histone Chaperones, Co-Repressor Proteins

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