PreprintCited by 7Plant Parasitism and ResistancePlant-Microbe Interactions and ImmunityPlant biochemistry and biosynthesis

The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.

Convergent strigolactone perception via independent horizontal gene transfer of pre-adapted α/β-hydrolases

Open access

Preprint — published as 10.1016/j.molp.2025.09.021

Abstract

Strigolactones (SLs) are not only phytohormones that influence multiple aspects of plant growth and development, but also signaling molecules for interactions between plants and certain fungi or bacteria. In plants, the SL receptor is an α/β-hydrolase (ABH) encoded by the D14 / KAI2 gene family, which is known to be derived from proteobacterial RsbQ through horizontal gene transfer (HGT). Here we show that the CpD14 - like ( CDL ) gene family, which encodes another ABH exhibiting SL receptor functions in fungi, was acquired from actinobacteria via an independent HGT event. X-ray crystallographic experiments reveal that CDL and D14/KAI2/RsbQ (DKR) proteins have distinctive lid structures but maintain the same core ‘α/β fold’ and catalytic triad. Biochemical assays further show that both actinobacterial CDL and proteobacterial RsbQ can recognize and hydrolyze SLs, suggesting that they are pre-adapted for SL perception. This work demonstrates that independent HGT of pre-adapted genes can trigger convergent evolution of key innovations and provides insights into how SLs are sensed by organisms across kingdoms.

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1101/2025.03.14.642314

Cites

1 of 1 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Flagged first, then by citations

Research works printed but not linked: 70

  1. 10.1038/nature07271 · DOI · Paper page
  2. 10.1038/nature07272 · DOI · Paper page
  3. 10.1146/annurev-arplant-042916-040925 · DOI
  4. 10.1126/science.154.3753.1189 · DOI
  5. 10.1093/jxb/erx432 · DOI
  6. 10.1038/nature03608 · DOI · Paper page
  7. 10.1007/s00294-016-0626-y · DOI
  8. 10.1007/s00425-011-1452-6 · DOI
  9. 2016, Strigolactones in the Rhizobium-legume symbiosis: stimulatory effect on bacterial surface motility and down-regulation of their levels in nodulated plants. Plant Sci. (Amsterdam, Neth, 245, 119
  10. 10.1007/s00425-011-1516-7 · DOI
  11. 11. De Cuyper C,, 2014, From lateral root density to nodule number, the strigolactone analogue GR24 shapes the root architecture of Medicago truncatula, J. Exp. Bot, 66, 137, 10.1093/jxb/eru404 · DOI
  12. 10.1038/nature19073 · DOI
  13. 10.1038/s41586-018-0743-5 · DOI
  14. 10.1016/j.tplants.2019.05.001 · DOI
  15. 10.1186/s12915-017-0397-z · DOI
  16. 10.1126/science.1099944 · DOI
  17. 10.1186/s12915-015-0219-0 · DOI
  18. 10.1073/pnas.0911635107 · DOI
  19. 10.1016/j.tplants.2021.11.009 · DOI
  20. 10.1111/nph.18013 · DOI
  21. 10.1074/jbc.RA117.001154 · DOI
  22. 10.1093/nar/gks1154 · DOI
  23. 10.1016/j.tig.2006.05.004 · DOI
  24. 10.1002/bies.201300007 · DOI
  25. Hedges SB & Kumar S (2009) The timetree of life (OUP Oxford). · DOI
  26. 10.1016/j.sbi.2016.08.005 · DOI
  27. 10.2174/1389203003381405 · DOI
  28. 10.1111/gtc.12025 · DOI · Paper page
  29. 10.1110/ps.041170005 · DOI
  30. 10.1038/s41477-021-01011-y · DOI
  31. Roesler K , et al. (2021) Arabidopsis Carboxylesterase 20 Binds Strigolactone and Increases Branches and Tillers When Ectopically Expressed in Arabidopsis and Maize. Frontiers in Plant Science 12. · DOI
  32. 10.1038/s41467-024-50928-3 · DOI
  33. 10.1101/gr.314502 · DOI
  34. 10.1371/journal.pone.0049440 · DOI
  35. 10.1111/mmi.12460 · DOI
  36. 10.1126/science.aab3831 · DOI
  37. 10.1016/j.cub.2023.12.035 · DOI
  38. 10.1038/nprot.2007.321 · DOI
  39. 10.1126/science.aab1140 · DOI
  40. 10.1073/pnas.2103175118 · DOI
  41. 10.1093/plphys/kiaa048 · DOI
  42. 10.1126/sciadv.aba1715 · DOI · Paper page
  43. Díaz-Escandón D , et al. (2022) Genome-level analyses resolve an ancient lineage of symbiotic ascomycetes. Curr. Biol. · DOI
  44. 2011, Multiple horizontal gene transfers of ammonium transporters/ammonia permeases from prokaryotes to eukaryotes: toward a new functional and evolutionary classification, Mol. Biol. Evol, 29, 51
  45. 10.1038/s41467-018-07849-9 · DOI
  46. 10.1186/s12915-019-0689-6 · DOI
  47. 10.1038/s41467-021-27838-9 · DOI · Paper page
  48. 2017, From Carotenoids to Strigolactones, J. Exp. Bot, 69, 2189
  49. 10.1002/anie.201914154 · DOI
  50. 10.1038/s41586-019-1693-2 · DOI · Paper page
  51. 10.1080/21501203.2011.584577 · DOI · Paper page
  52. 10.1371/journal.pbio.1001889 · DOI · Paper page
  53. 10.1093/molbev/mst010 · DOI · Paper page
  54. 10.1093/bioinformatics/btp348 · DOI
  55. 10.1093/molbev/msaa015 · DOI · Paper page
  56. 10.1093/sysbio/sys029 · DOI
  57. 10.1038/nmeth.4285 · DOI · Paper page
  58. 10.1093/nar/gku316 · DOI · Paper page
  59. 10.1093/nar/gkv416 · DOI
  60. 10.1016/j.molp.2023.09.010 · DOI
  61. 10.1371/journal.pcbi.1006650 · DOI · Paper page
  62. 10.1093/sysbio/syy032 · DOI · Paper page
  63. 10.1107/S0907444909047337 · DOI · Paper page
  64. 10.1107/S0907444913000061 · DOI
  65. McCoy AJ , et al. (2007) Phaser crystallographic software. 40(4):658-674. · DOI · Paper page
  66. 10.1107/S0907444910007493 · DOI · Paper page
  67. 10.1107/S0907444911001314 · DOI
  68. 10.1002/jcc.21256 · DOI
  69. 10.1038/cr.2015.122 · DOI
  70. 10.1038/cr.2013.19 · DOI

Metadata

Authors
Wang, Q., Ye, Y., Wang, L., Guan, Y., Wang, S., Wang, Z., Sun, H., Smith, S. M., & Huang, J.
Affiliations
  • Kunming Institute of Botany (CN)
  • Biortus (China) (CN)
  • China Pharmaceutical University (CN)
  • University of Tasmania (AU)
Corresponding author
  • Smith, Steven M.
  • Huang, Jinling
Venue
Molecular Plant
Publisher
openRxiv
Published
2025-03-17
Volume
18
Issue
11
Pages
1949-1961
ISSN
1674-2052 (ISSN-L)
OpenAlex
W4414695375
Cited by
7
References
1
Citations by year
2026: 4 · 2025: 3
FWCI
3.78
Type
journal article
Language
en
Open access
Locations
  • Molecular Plant (publishedVersion)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
  • PubMed (publishedVersion)
Funders
  • National Natural Science Foundation of China (32170242, 32470244)
  • Ministry of Science and Technology of the People's Republic of China (2019QZKK0502)
  • Youth Innovation Promotion Association of the Chinese Academy of Sciences (2022398)
  • Yunnan Provincial Science and Technology Department (202201AT070163)
  • People's Government of Yunnan Province (XDYC-QNRC-2022-0046)
  • National Key Research and Development Program of China (2024YFF1306700)
  • Australian Research Council Centre of Excellence for Plant Success in Nature and Agriculture (CE 200100015)
Topics
  • Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Parasitism and Resistance
  • Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant-Microbe Interactions and Immunity
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Plant biochemistry and biosynthesis
Keywords
strigolactones, horizontal gene transfer, alpha/beta hydrolase, strigolactone perception, DWARF14, Cryphonectria parasitica, actinobacteria, Proteobacteria, plant-fungal interactions, protein evolution, lid domain, ligand specificity
MeSH terms
Ascomycota, Bacteria, Fungi, Heterocyclic Compounds, 3-Ring, Hydrolases, Hydrolysis, Lactones, Phylogeny, Gene Transfer, Horizontal

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review