American Gut: an Open Platform for Citizen-Science Microbiome Research

Cited by (884)

Items 501–600 of 884

1. Joint Analysis of Long and Short Reads Enables Accurate Estimates of Microbiome Complexity
   Anton Bankevich, Pavel A. Pevzner · 2018 · Cell Systems
2. Reply to: Examining microbe–metabolite correlations by linear methods
   James T. Morton, Daniel T. McDonald, Alexander A. Aksenov, Louis-Félix Nothias-Scaglia, James R. Foulds, Robert A. Quinn, Michelle H. Badri, Tami L. Swenson, Marc W. Van Goethem, Trent R. Northen et al. · 2021 · Nature Methods
3. Improving microbial phylogeny with citizen science within a mass-market video game
   Sarrazin-Gendron, Roman, Ghasemloo Gheidari, Parham, Butyaev, Alexander, Keding, Timothy, Cai, Eddie, Zheng, Jiayue, Mutalova, Renata, Mounthanyvong, Julien, Zhu, Yuxue, Nazarova, Elena et al. · 2025 · Nature Biotechnology
4. Association of Long-Term Habitual Dietary Fiber Intake since Infancy with Gut Microbiota Composition in Young Adulthood
   Marja A. Heiskanen, Anna‐Katariina Aatsinki, Petra Hakonen, Noora Kartiosuo, Eveliina Munukka, Leo Lahti, Anniina Keskitalo, Pentti Huovinen, Harri Niinikoski, Jorma S.A. Viikari et al. · 2024 · Journal of Nutrition
5. Perspective: Promoting Healthy Aging through Nutrition: A Research Centers Collaborative Network Workshop Report
   M. Kyla Shea, Larissa J. Strath, Minjee Kim, Lan N. Ðoàn, Sarah L. Booth, Tina E. Brinkley, Stephen B. Kritchevsky · 2024 · Advances in Nutrition
6. Rationale and design of a randomized placebo-controlled nutritional trial embracing a citizen science approach
   Marieke van de Put, Maartje van den Belt, Nicole J. W. de Wit, Remco Kort · 2024 · Nutrition Research
7. ADAPT: Analysis of Microbiome Differential Abundance by Pooling Tobit Models
   Mukai Wang, Simon Fontaine, Hui Jiang, Gen Li · 2024 · Bioinformatics
8. Semisynthetic simulation for microbiome data analysis
   Kris Sankaran, Saritha Kodikara, Jingyi Jessica Li, Kim‐Anh Lê Cao · 2024 · Briefings in Bioinformatics
9. Vegan and Plant-Based Diets in the Management of Metabolic Syndrome: A Narrative Review from Anti-Inflammatory and Antithrombotic Perspectives
   Fatemeh Jafarnezhad, Ata Nazarzadeh, Haniyeh Bazavar, Shayan Keramat, Ireneusz Ryszkiel, Agata Stanek · 2025 · Nutrients
10. Network-Based Approaches for the Investigation of Microbial Community Structure And Function Using Metagenomics-Based Data
    Thomas Kaiser, Cyrus Jahansouz, Christopher M. Staley · 2022 · Future Microbiology
11. NetGAM: Using generalized additive models to improve the predictive power of ecological network analyses constructed using time-series data
    Samantha J. Gleich, Jacob A. Cram, JL Weissman, David A. Caron · 2022 · ISME Communications
12. Lost food narratives can grow human health in cities
    Alessandro Ossola, Monika Egerer, Brenda B. Lin, G.A.W. Rook, Heikki M. Setälä · 2018 · Frontiers in Ecology and the Environment
13. HITS: Harnessing a Collaborative Training Network to Create Case Studies that Integrate High-Throughput, Complex Datasets into Curricula
    Sabrina D. Robertson, Andrea Bixler, Melissa Eslinger, Monica M. Gaudier‐Diaz, Adam J. Kleinschmit, Pat Marsteller, Kate K. O’Toole, Usha Sankar, Carlos Goller · 2021 · Frontiers in Education
14. Implementations of the chemical structural and compositional similarity metric in R and Python
    Asker Brejnrod, Madeleine Ernst, Piotr Dworzyński, Lasse Buur Rasmussen, Pieter C. Dorrestein, Justin J. J. van der Hooft, Manimozhiyan Arumugam · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
15. Meta-analysis of the autism gut microbiome identifies factors influencing study discrepancies and machine learning classification
    Aries Chavira, Eric Hou-Jen Wang, Robert H. Mills · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
16. Fecal microbiota transplant and dermatologic disorders: A retrospective cohort study assessing the gut microbiome’s role in skin disease
    Snyder, Ashley M, Abbott, James, Jensen, M Kyle, Secrest, Aaron M · 2021 · World Journal of Dermatology
17. Microbiome: A Key Regulator of Body-Brain Interactions
    Kenneth J. O’Riordan, María R. Aburto, Jatin Kumar Nagpal, Gerard A. Clarke, John F. Cryan · 2025 · Advances in experimental medicine and biology
18. Identification of a 10-species microbial signature of inflammatory bowel disease by machine learning and external validation
    Shicheng Yu, Jun Li, Zhaofeng Ye, Mengxian Zhang, Xiaohua Guo, Xu Wang, Liansheng Liu, Yalong Wang, Xin Zhou, Wei Fu et al. · 2025 · Cell Regeneration
19. Demographic drivers of gut microbiome diversity
    Hannaneh Kabir, Matilda Holtz, Justine Choueiri, Mohammad R. K. Mofrad · 2025 · AMB Express
20. Exploring gut microbiota profile induced by antipsychotics in schizophrenic patients: insights from an Eastern European pilot study
    Ilinca-Bianca Nita, Irina-Cezara Văcărean-Trandafir, Roxana-Maria Amărandi, Ovidiu‐Dumitru Ilie, Romeo Dobrin, Andreea Cristina Bejenariu, Iuliu-Cristian Ivanov, Bogdan Doroftei · 2025 · BMC Psychiatry
21. The microbiome regulates host metabolic health and diseases through microbial enzymes
    Yong Ding, Zhiwei Zhang, Kai Wang, Changtao Jiang · 2026 · Nature Reviews Gastroenterology & Hepatology
22. Delivery Mode and Perinatal Antibiotics Influence the Infant Gut Bacteriome and Mycobiome: A Network Analysis
    Mysore V. Tejesvi, Jenni Turunen, Sonja Salmi, Justus Reunanen, Niko Paalanne, Terhi Tapiainen · 2023 · Journal of Fungi
23. The Human Gut Microbiota in all its States: From Disturbance to Resilience
    Julien Tap, Étienne Ruppé, Muriel Derrien · 2021 · Elsevier eBooks
24. Association between Intake of Fermented Dairy Product and Diet Quality, Health Beliefs in a Representative Sample of Polish Population
    Anna Danielewicz, Jakub Morze, Katarzyna Staniewska, Aneta Zofia Dąbrowska, Tomasz Sawicki, Zhennai Yang, Maria Baranowska, Małgorzata Darewicz, Justyna Żulewska, Bogusław Staniewski et al. · 2022 · Nutrients
25. Confounding factors in the effect of gut microbiota on bone density
    Rajeev Aurora · 2019 · Lara D. Veeken
26. Generally-healthy individuals with aberrant bowel movement frequencies show enrichment for microbially-derived blood metabolites associated with reduced kidney function
    Johannes P. Johnson-Martínez, Christian Diener, Anne E. Levine, Tomasz Maciej Wilmanski, David L. Suskind, Alexandra Ralevski, Jennifer Hadlock, Andrew T. Magis, Leroy Hood, Noa Rappaport et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
27. The holobiont mind: A bridge between 4E-cognition and the microbiome
    Palacios-Garcia, Ismael, Parada, Francisco J. · 2021
28. TransDiscovery: Discovering Biotransformation from Human Microbiota by Integrating Metagenomic and Metabolomic Data
    Donghui Yan, Liu Cao, Muqing Zhou, Hosein Mohimani · 2022 · Metabolites
29. The Role of Gut-derived Short-Chain Fatty Acids in Multiple Sclerosis
    Mohamed Jamal Saadh, Hani Moslem Ahmed, Zaid Khalid Alani, Rafil Adnan Hussein Al Zuhairi, Zainab M. Almarhoon, Hijaz Ahmad, Mohammed Ubaid, Nathera Hussin Alwan · 2024 · NeuroMolecular Medicine
30. Fecal Microbiota and Metabolites Predict Metabolic Health Features across Various Dietary Patterns in Adults
    Alexis D Baldeon, Tori A. Holthaus, Naiman A. Khan, Hannah D. Holscher · 2025 · Journal of Nutrition
31. Gut microbiota alterations in sleep disturbances: A systematic review and meta-analysis
    Zhe Wang, Tingting Wu, Juan Li, Gengzhi Dong, Lingzhuo Kong, Yin Zhang, Zhibo Zhang, Zhaoyan Lv, Yi Zhang, Rui Zhan et al. · 2026 · Sleep Medicine Reviews
32. Protocol for The International Cohort on Lifestyle Determinants of Health Study: A Longitudinal Investigation of Complementary and Integrative Health Utilization in Postsecondary Education Students
    Ryan D. Bradley, Courtney K. Pickworth, Ryan S. Wexler, Adam Sadowski, Lita Buttolph, Hadil Sarrar, Jillian Moehle, M. Tediana Torrens, Joanna Harnett, Erica McIntyre et al. · 2020 · The Journal of Alternative and Complementary Medicine
33. Preventing Gestational Diabetes with a Healthy Gut Diet: Protocol for a Pilot, Feasibility Randomized Controlled Trial
    Nina J. L. Meloncelli, HANNAH M. O'CONNOR, Shelley Ann Wilkinson, Marloes Dekker Nitert, Lauren N. Kearney, Susan de Jersey · 2023 · Nutrients
34. Multi-omics insights implicate the remodeling of the intestinal structure and microbiome in aging
    Shaohua Chen, Chengbang Wang, Xiong Zou, Hanwen Li, Guanglin Yang, Xiaotao Su, Zengnan Mo · 2024 · Frontiers in Genetics
35. HighDimMixedModels.jl: Robust high-dimensional mixed-effects models across omics data
    Evan Gorstein, Rosa Aghdam, Claudia Solís‐Lemus · 2025 · PLoS Computational Biology
36. Delivery Mode Impacts Gut Bacteriophage Colonization During Infancy
    Poorani Subramanian, Hector N. Romero-Soto, David Stern, George L. Maxwell, Shira Levy, Suchitra K. Hourigan · 2025 · Gut Microbes Reports
37. Measuring Dietary Botanical Diversity as a Proxy for Phytochemical Exposure
    Henry J. Thompson, Jack O. Levitt, John N. McGinley, Paulette D. Chandler, Patricia M. Guenther, Inge Huybrechts, Mary C. Playdon · 2021 · Nutrients
38. Exploration of Diet Quality by Obesity Severity in Association with Gestational Weight Gain and Distal Gut Microbiota in Pregnant African American Women: Opportunities for Intervention
    K. Leigh Greathouse, R. Noah Padgett, Joseph F. Petrosino, Marie Hastings‐Tolsma, Mary Ann Faucher · 2021 · Maternal and Child Health Journal
39. The molecular impact of life in an indoor environment
    Alexander A. Aksenov, Rodolfo A. Salido, Alexey V. Melnik, Caitriona Brennan, Asker Brejnrod, Andrés Mauricio Caraballo‐Rodríguez, Julia M. Gauglitz, Franck Lejzerowicz, Delphine K. Farmer, Marina E. Vance et al. · 2022 · Science Advances
40. Diversity and metabolic energy in bacteria
    Ben Allen, Rebeca González‐Cabaleiro, Irina Dana Ofiţeru, Lise Øvreås, William T. Sloan, Donna Swan, Thomas Peter Curtis · 2023 · FEMS Microbiology Letters
41. Stability of oral and fecal microbiome at room temperature: impact on diversity
    Blanca Rius‐Sansalvador, David Bars‐Cortina, Olfat Khannous‐Lleiffe, Ainhoa García‐Serrano, Elisabet Guinó, Ester Saus, Toni Gabaldón, Victor Rau Moreno, Mireia Obón‐Santacana · 2025 · Frontiers in Microbiomes
42. Microbial Interaction Network Estimation via Bias-Corrected Graphical Lasso
    Duo Jiang, Thomas J. Sharpton, Yuan Jiang · 2020 · Statistics in Biosciences
43. Multiomic Analyses of Nascent Preterm Infant Microbiomes Differentiation Suggest Opportunities for Targeted Intervention
    Stephanie B. Orchanian, Julia M. Gauglitz, Stephen Wandro, Kelly C. Weldon, Megan M. Doty, Kristina Stillwell, Shalisa Hansen, Lingjing Jiang, Fernando Vargas, Kyung E. Rhee et al. · 2022 · Advanced Biology
44. Crowdsourcing Our National Gut
    Laura Grieneisen, Ran Blekhman · 2018 · mSystems
45. Accelerating Gut Microbiome Research with Robust Sample Collection
    Zoe J. Zreloff, Danielle Lange, Suzanne D. Vernon, Martha R. Carlin, Raúl J. Cano · 2020 · Preprints.org
46. Playing the System: Can Puzzle Players Teach us How to Solve Hard Problems?
    Mutalova, Renata, Sarrazin-Gendron, Roman, Cai, Eddie, Richard, Gabriel, Ghasemloo Gheidari, Parham, Caisse, Sébastien, Knight, Rob, Blanchette, Mathieu, Szantner, Attila, Waldispühl, Jérôme · 2023 · Proceedings of the 2023 CHI Conference on Human Factors in Computing Systems
47. Co‐designing The Healthy Gut Diet for Preventing Gestational Diabetes: Co‐design methods and process outcomes
    Nina J. L. Meloncelli, Shelley Ann Wilkinson, Alita Rushton, Kelsey Pateman, Sam Gallaher, HANNAH M. O'CONNOR, Lauren N. Kearney, Susan de Jersey · 2024 · Journal of Human Nutrition and Dietetics
48. Gut microbiome and serum metabolome alterations associated with lactose intolerance (LI): a case‒control study and paired-sample study based on the American Gut Project (AGP)
    Hong Xue, Yitian Wang, Chunfeng Mei, Lili Han, Mengxiong Lu, Xuan Li, Ting Chen, Fengyun Wang, Xudong Tang · 2024 · mSystems
49. Calculating fast differential genome coverages among metagenomic sources using micov
    Yuhan Weng, Caitlin Guccione, Daniel McDonald, Renee E. Oles, Suzanne Devkota, Evguenia Kopylova, Gregory D. Sepich‐Poore, Rodolfo A. Salido, M. Omar Din, Se Jin Song et al. · 2025 · Communications Biology
50. A resource to empirically establish drug exposure records directly from untargeted metabolomics data
    Haoqi Nina Zhao, Kine Eide Kvitne, Corinna Brungs, Siddharth Mohan, Vincent Charron‐Lamoureux, Wout Bittremieux, Runbang Tang, Robin Schmid, Santosh Lamichhane, Shipei Xing et al. · 2025 · Nature Communications
51. Colibactin genes are highly prevalent in the developing infant gut microbiome
    Shira Levy, Kathryn E. McCauley, Rachel E. Strength, Emily S. Robbins, Qing Chen, Sivaranjani Namasivyam, George Larry Maxwell, Suchitra K. Hourigan · 2025 · Gut Microbes
52. Detection of cardiovascular disease using explainable artificial intelligence and gut microbiota data
    Can Duyar, Simone Oliver Senica, Habil Kalkan · 2024 · Intelligence-Based Medicine
53. Data Integration for Immunology
    Sílvia Pineda, Daniel G. Bunis, Idit Kosti, Marina Sirota · 2020 · Annual Review of Biomedical Data Science
54. Assessment of human microbiota stability across longitudinal samples using iteratively growing-partitioned clustering
    Pedro Sánchez-Sánchez, Francisco José Santonja Gómez, Alfonso Benítez‐Páez · 2022 · Briefings in Bioinformatics
55. Perspectives on Inequity and Health Disparities in Chile and Their Relationship to Microbial Ecology
    José Izcue, Ismael Palacios-García, Felipe Rojas Traverso, Macarena Koller, Francisco J. Parada · 2022 · mSystems
56. Inference of microbial covariation networks using copula models with mixture margins
    Rebecca A. Deek, Hongzhe Li · 2023 · Bioinformatics
57. Dichotomous effect of dietary fiber in pediatrics: a narrative review of the health benefits and tolerance of fiber
    Nandini Basuray, Edward C. Deehan, Flávio Teixeira Vieira, Hayford Mawuli Avedzi, Reena L. Duke, Eloisa Colin-Ramírez, Hein Min Tun, Zhengxiao Zhang, Eytan Wine, Karen L. Madsen et al. · 2024 · European Journal of Clinical Nutrition
58. Akkermansia beyond muciniphila - emergence of new species Akkermansia massiliensis sp. nov.
    Ritesh Kumar, Oliver Hasselwander, Helene Kane, Ashley A. Hibberd · 2024 · Microbiome Research Reports
59. The gut microbiome and dietary metabolites in the treatment of renal cell carcinoma
    Miguel Zugman, Megan H. Wong, Salvador Jaime‐Casas, Sumanta Kumar Pal · 2024 · Urologic Oncology Seminars and Original Investigations
60. The impact of Opisthorchis felineus infection and praziquantel treatment on the intestinal microbiota in children
    Т. S. Sokolova, В. А. Петров, Irina Vladimirovna Saltykova, Yulia B. Dorofeeva, Alexander Tyakht, Ludmila Mikhailovna Ogorodova, Olga Sergeevna Fedorova · 2021 · Acta Tropica
61. Topological Data Analysis Highlights Novel Geographical Signatures of the Human Gut Microbiome
    Eva Lymberopoulos, Giorgia Isabella Gentili, Muhannad Alomari, Nikhil Sharma · 2021 · Frontiers in Artificial Intelligence
62. Bayesian hierarchical negative binomial models for multivariable analyses with applications to human microbiome count data
    Amanda H. Pendegraft, Boyi Guo, Nengjun Yi · 2019 · PLoS ONE
63. Fermented Vegetables as Vectors for Relocation of Microbial Diversity from the Environment to the Human Gut
    Ilenys M. Pérez‐Díaz · 2019 · Springer eBooks
64. Thresholded Adaptive Validation: Tuning the Graphical Lasso for Graph Recovery
    Mike Laszkiewicz, Asja Fischer, Johannes Lederer · 2020 · arXiv (Cornell University)
65. Analyzing indoor mycobiomes through a large-scale citizen science study of houses from Norway
    Pedro Maria Martin-Sanchez, Eva Lena F. Estensmo, Luís Neves Morgado, Sundy Maurice, Ingeborg Bjorvand Engh, Inger Skrede, Håvard Kauserud · 2020
66. HIV infection among women and children and antidiscrimination laws: an overview.
    Josephine Gittler, Sharon Rennert · 1992 · PubMed
67. Alterations in Gut Microbiota–Brain Axis in Major Depressive Disorder as Identified by Machine Learning
    Atacan Deniz Oncu, Arzucan Özgür, Kutlu Ö. Ülgen · 2025 · OMICS A Journal of Integrative Biology
68. Comparative analysis of full-length 16s ribosomal RNA gene sequencing in human oropharyngeal swabs using primer sets with different degrees of degeneracy
    Christian Waechter, Janna-Nele Wilkens, Leon Fehse, Dominik Heider, Kiarash Sassani, Georgios Chatzis, Sebastian Weyand, Sabine Pankuweit, Ulrich Luesebrink, Muhidien Soufi et al. · 2025 · Frontiers in Cellular and Infection Microbiology
69. Reference-guided assembly of metagenomes with MetaCompass
    Tu Luan, Victoria P. Cepeda-Espinoza, Bo Liu, Zac Bowen, Ujjwal Ayyangar, Mathieu Almeida, Sergey Koren, Todd J. Treangen, Adam Porter, Mihai Pop · 2025 · Cell Reports Methods
70. Gut Microbial Shifts Indicate Melanoma Presence and Bacterial Interactions in a Murine Model
    Marco Rossi, Salvatore M. Aspromonte, Frederick J. Kohlhapp, Jenna H. Newman, Alex Lemenze, Russell Pepe, Samuel M. Defina, Nora L. Herzog, ROBERT J. DONNELLY, Timothy Michael Kuzel et al. · 2022 · Diagnostics
71. GMEmbeddings: An R Package to Apply Embedding Techniques to Microbiome Data
    Christine A. Tataru, Austin Eaton, Maude M. David · 2022 · Frontiers in Bioinformatics
72. Application of Computational Data Modeling to a Large-Scale Population Cohort Assists the Discovery of Inositol as a Strain-Specific Substrate for Faecalibacterium prausnitzii
    Shaillay Kumar Dogra, Adrien Dardinier, Fabio Mainardi, Léa Siegwald, Simona Bártová, Caroline Ivanne Le Roy, Chieh Jason Chou · 2023 · Nutrients
73. Randomized Comparative Effectiveness Trial of 2 Federally Recommended Strategies to Reduce Excess Body Fat in Overweight, Low-Income Patients: MyPlate.gov vs Calorie Counting
    W. McCarthy, M. Rico, Maria Chandler, Dena R. Herman, Cindy Chang, T. Belin, Stephanie Love, E. Ramirez, L. Gelberg · 2023 · Annals of Family Medicine
74. The pan-microbiome profiling system Taxa4Meta identifies clinical dysbiotic features and classifies diarrheal disease
    Qinglong Wu, Shyam Badu, Sik Yu So, Todd J. Treangen, Tor Savidge · 2023 · Journal of Clinical Investigation
75. The potential of including the microbiome as biomarker in population-based health studies: methods and benefits
    Florence E. Buytaers, Nicolas Berger, Johan Van der Heyden, Nancy H. C. Roosens, Sigrid C. J. De Keersmaecker · 2024 · Frontiers in Public Health
76. Biodiversity–ecosystem function relationships on bodies and in buildings
    Robert R. Dunn, Aspen T. Reese, Nico Eisenhauer · 2018 · Nature Ecology & Evolution
77. Factors in an Auto-Brewery Syndrome group compared to an American Gut Project group: a case-control study
    Barbara Cordell, Anup K. Kanodia, Gregory K. Miller · 2021 · F1000Research
78. Gut microbiota gestalt
    Jonathan Melamed, Gabrielle LeBlanc, Michael G. Constantinides · 2022 · Cell Host & Microbe
79. Gut Microbiome and its Role in the Development of Neurological Disorder (Schizophrenia)
    Ayesha Ameen, Muhammad Nadeem Akram, Sana Farooq, Mehreen Fatima, Hassan Raza, Rabia Naz, Umer Aziz, Mariyam Aziz, Syed Tahir, Athar Hussain · 2023 · Pakistan Journal of Medical and Health Sciences
80. Chemical Impacts of the Microbiome Across Scales Reveal Novel Conjugated Bile Acids
    Robert A. Quinn, Alison F. Vrbanac, Alexey V. Melnik, Kathryn A. Patras, Mitchell P. Christy, Andrew T. Nelson, Alexander A. Aksenov, Anupriya Tripathi, Greg C. Humphrey, Ricardo Silva et al. · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
81. Native Electrospray-based Metabolomics Enables the Detection of Metal-binding Compounds
    Allegra T. Aron, Daniel Petras, Robin Schmid, Julia M. Gauglitz, Isabell Büttel, Luis Antelo, Hui Zhi, Christina Caroline Saak, Kien P. Malarney, Eckhard Thines et al. · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
82. BayesTime: Bayesian Functional Principal Components for Sparse Longitudinal Data
    Lingjing Jiang, Yuan Zhong, Chris Elrod, Loki Natarajan, Rob D. Knight, Wesley Kurt Thompson · 2020 · arXiv (Cornell University)
83. Metagenomics and Machine Learning-Based Precision Medicine Approaches for Autoimmune Diseases
    Itrat Zehrh, Umme Habiba, Matilde Rosalia Picco, Sidra Hafiza Bashir, Umer Abdul Rehman, Owaisa Haider, Shahzaib Khoso · 2023 · Preprints.org
84. Connecting the Healthy Eating Index With Microbiota Diversity
    Abigail J. Johnson · 2023 · Journal of Nutrition
85. Automated Harmonization and Large-Scale Integration of Heterogeneous Biomedical Sample Metadata Using Large Language Models
    Koichi Higashi, Zenichi Nakagawa, Takuji Yamada, Hiroshi Mori · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
86. A Mediterranean Diet for Crohn’s Disease: Embracing Colorful Diversity to Improve the Microbiome
    Maria Teresa Abreu, Suzanne Devkota, Kelly Issokson · 2025 · Gastroenterology
87. SARS-CoV-2 infectivity can be modulated through bacterial grooming of the glycocalyx
    Cameron Martino, Benjamin P. Kellman, Daniel R. Sandoval, Thomas Mandel Clausen, Robert M. Cooper, Alhosna Benjdia, Feryel Soualmia, Alex E. Clark, Aaron F. Garretson, Clarisse A. Marotz et al. · 2025 · mBio
88. Seq2Saccharide: Discovering Oligosaccharides and Aminoglycosides Natural Products by Integrating Computational Mass Spectrometry and Genome Mining
    Donghui Yan, Bahar Behsaz, Yanjing Li, Xiaofeng Wang, Leigh E. Skala, Sitong Liu, Hyun Woo Lew, Mustafa Güler, Hunsica J. Jayaprakash, Muqing Zhou et al. · 2025 · Journal of the American Chemical Society
89. Machine learning-driven analysis of feed additives and intestinal microbiota diversity in broiler chickens: Clustering of mineral profiles and predictive diet modeling
    Lyubov Grishina, Arthur Zhigalov, Irina Pavlovna Bolodurina, Alexander Shukhman, Pavel Leonidovich Niryan, Olga Vilorievna Kvan, Elena Vladimirovna Sheida · 2025 · Veterinary World
90. Dietary Protein Source Shapes Gut Microbial Structure and Predicted Functional Potential: a Systematic Integrative Re-Analysis Using Machine Learning
    Samson Adedeji Adejumo, Garry Lewis, Pritha Das, Casey Kin Yun Lim, Judy Malas, Angus Nnamdi Oli, Jacob M. Allen, Jarrad Hampton‐Marcell · 2026 · Advances in Nutrition
91. Microbial Ecology and Metabolism of Emerging Adulthood: Gut Microbiome Insights from a College Freshman Cohort
    Alex E. Mohr, Paniz Jasbi, Irene van Woerden, Jinhua Chi, Haiwei Gu, Meg M. Bruening, Corrie Marie Whisner · 2024 · Gut Microbes Reports
92. The fecal microbiota of the mouse-eared bat (Myotis velifer) with new records of microbial taxa for bats
    Hanya D. Arellano-Hernández, Leslie Mariella Montes-Carreto, José Antonio Guerrero, Esperanza Martínez‐Romero · 2024 · PLoS ONE
93. IMPACT: interpretable microbial phenotype analysis via microbial characteristic traits
    Daniel Mechtersheimer, Wenze Ding, Xiangnan Xu, Sanghyun Kim, Carolyn M. Sue, Yue Cao, Jean Yee Hwa Yang · 2024 · Bioinformatics
94. Cross-validation for training and testing co-occurrence network inference algorithms
    Daniel Akwesi Agyapong, Jeffrey Propster, Jane Claire Marks, Toby Dylan Hocking · 2025 · BMC Bioinformatics
95. A Review: Correlation Between Fermented Food and Human Microbiome
    Rahel Debbarma, Sony Kumari, Doly Barman, Rony Bhowal, Puja Roy · 2025 · Natural Sciences
96. Why Are Internal Mammary (Thoracic) Arteries Less Prone to Developing Atherosclerosis Compared to Coronary Arteries? Do Gut Microbiota Play a Role? A Narrative Review
    Leon M. T. Dicks · 2025 · International Journal of Molecular Sciences
97. Red meat consumption in higher healthy eating index diets is associated with brain health critical nutritional adequacy, and fecal microbial diversity
    Samitinjaya Dhakal, Mosharraf Hossain, Sanam Parajuli · 2025 · Scientific Reports
98. 16S rRNA sequencing of samples from universal stool bank donors
    Marina Santiago, Scott W. Olesen · 2021 · BMC Research Notes
99. Impact of exclusive enteral nutrition on the gut microbiome of children with medical complexity
    Julia Beauchamp‐Walters, Gajender Aleti, Lourdes Herrera, Justine W. Debelius, Natalie Lima, Pritha B. Dalal, Suzi Hong, Rob D. Knight, Kyung E. Rhee · 2022 · Journal of Parenteral and Enteral Nutrition
100. Principal microbial groups: compositional alternative to phylogenetic grouping of microbiome data
     Aslı Boyraz, Vera Pawlowsky‐Glahn, Juan José Egozcue, Aybar C. Acar · 2022 · Briefings in Bioinformatics