American Gut: an Open Platform for Citizen-Science Microbiome Research

Cited by (884)

Items 401–500 of 884

1. Power of Microbiome Beta-Diversity Analyses Based on Standard Reference Samples
   Mitchell H. Gail, Yunhu Wan, Jianxin Shi · 2020 · American Journal of Epidemiology
2. Milk glycan metabolism by intestinal bifidobacteria: insights from comparative genomics
   Aleksandr A. Arzamasov, Andrei L. Osterman · 2022 · Critical Reviews in Biochemistry and Molecular Biology
3. The Potential Use of Artificial Intelligence in Irritable Bowel Syndrome Management
   Radu Alexandru Vulpoi, Mihaela Luca, Adrian Ciobanu, Andrei Vasile OLTEANU, Oana Bărboi, Diana‐Elena Iov, Loredana Nichita, Irina Ciortescu, Cristina Cijevschi Prelipcean, Gabriela Ștefănescu et al. · 2023 · Diagnostics
4. The gut microbiome modulate response to immunotherapy in cancer
   Shanshan Jiang, Zi‐Ran Kang, Yingxuan Chen, Jing‐Yuan Fang · 2024 · Science China Life Sciences
5. Disentangling microbial associations from hidden environmental and technical factors via latent graphical models
   Zachary D. Kurtz, Richard Bonneau, Christian L. Müller · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
6. Diet–microbiome associations in 10,068 individuals from the Human Phenotype Project to guide personalized nutrition
   Tomer Segev, Daniel Barak, Liron Zahavi, Anastasia Godneva, Michal Rein, David L. Krongauz, Dorit Samocha‐Bonet, Hagai Rossman, Adina Weinberger, Eran Segal · 2026 · Nature Medicine
7. Individuals with substance use disorders have a distinct oral microbiome pattern
   Tomasz Kościółek, Teresa A. Victor, Rayus Kuplicki, Maret Rossi, Mehrbod Estaki, Gail L. Ackermann, Rob D. Knight, Martin P. Paulus · 2021 · Brain Behavior & Immunity - Health
8. DAnIEL: A User-Friendly Web Server for Fungal ITS Amplicon Sequencing Data
   Daniel Loos, Lu Zhang, Christine Beemelmanns, Oliver Kurzai, Gianni Panagiotou · 2021 · Frontiers in Microbiology
9. A longitudinal analysis of Australian women's fruit and vegetable consumption and depressive symptoms
   Megan Frances Lee, Joanne Bradbury, Jacqui Yoxall, Sally J. E. Sargeant · 2023 · British Journal of Health Psychology
10. Maximizing the potential of high-throughput next-generation sequencing through precise normalization based on read count distribution
    Caitriona Brennan, Rodolfo A. Salido, Pedro Belda‐Ferre, MacKenzie Bryant, Charles Cowart, Maria Denalene Tiu, Antonio González, Daniel T. McDonald, Caitlin Tribelhorn, Amir Zarrinpar et al. · 2023 · mSystems
11. Standardization of gut microbiome analysis in sports
    Laura Mancin, Antonio Paoli, Sara Berry, Javier Thomas Gonzalez, Adam J. Collins, Maria Antonia Lizarraga, João Felipe Mota, Segata Nicola, Ian Rollo · 2024 · Cell Reports Medicine
12. Finding Archetypal Spaces Using Neural Networks
    David van Dijk, Daniel B. Burkhardt, Matthew Amodio, Alexander Tong, Guy Wolf, Smita Krishnaswamy · 2019 · IEEE International Conference on Big Data (BigData)
13. Mainstreaming Microbes across Biomes
    Laurence J. Clarke, Penelope Jones, Hans Ammitzboll, Leon A. Barmuta, Martin F. Breed, Anthony A. Chariton, Michael Charleston, Vongai Dakwa, Fera Roswita Dewi, Rajaraman D. Eri et al. · 2020 · BioScience
14. High-Diversity Plant-Based Diet and Gut Microbiome, Plasma Metabolome, and Symptoms in Adults with CKD
    Jordan Stanford, Anita Stefoska‐Needham, Xiaotao Jiang, Brett C McWhinney, Hicham I. Cheikh Hassan, Emad M. El-Omar, Karen Elizabeth Charlton, Kelly Lambert · 2025 · Clinical Journal of the American Society of Nephrology
15. Extension of PERMANOVA to Testing the Mediation Effect of the Microbiome
    Ye Yue, Yi‐Juan Hu · 2022 · Genes
16. Over-optimism in unsupervised microbiome analysis: Insights from network learning and clustering
    Theresa Ullmann, Stefanie Peschel, Philipp Finger, Christian L. Müller, Anne‐Laure Boulesteix · 2023 · PLoS Computational Biology
17. Relationships of the gut microbiome with cognitive development among healthy school-age children
    Yelena Lapidot, Maayan Maya, Leah Reshef, Dani Cohen, Asher Ornoy, Uri Gophna, Khitam Muhsen · 2023 · Frontiers in Pediatrics
18. Eating away cancer: the potential of diet and the microbiome for shaping immunotherapy outcome
    Ngoc-Trang Adrienne Nguyen, Yan Jiang, Jennifer Leigh McQuade · 2024 · Frontiers in Immunology
19. The association between dietary exposures and anxiety symptoms: A prospective analysis of the Australian Longitudinal Study on Women’s Health cohort
    Megan Frances Lee, Rebecca Orr, Wolfgang Marx, Felice N. Jacka, Adrienne E O'Neil, Melissa M. Lane, Deborah N Ashtree · 2025 · Journal of Affective Disorders
20. A Lot on Your Plate? Well-to-Well Contamination as an Additional Confounder in Microbiome Sequence Analyses
    Alan W. Walker · 2019 · mSystems
21. Metabolome-Informed Microbiome Analysis Refines Metadata Classifications and Reveals Unexpected Medication Transfer in Captive Cheetahs
    Julia M. Gauglitz, James T. Morton, Anupriya Tripathi, Shalisa Hansen, Michele Gaffney, Carolina S. Carpenter, Kelly C. Weldon, Riya Shah, Amy Parampil, Andrea Fidgett et al. · 2020 · mSystems
22. EchidnaCSI: Engaging the public in research and conservation of the short-beaked echidna
    Tahlia Perry, Alan Stenhouse, Isabella Wilson, Imma Perfetto, Michael W. McKelvey, Michelle Coulson, Rachel A. Ankeny, Peggy D. Rismiller, Frank Grützner · 2022 · Proceedings of the National Academy of Sciences
23. End-to-end assessment of fecal bacteriome analysis: from sample processing to DNA sequencing and bioinformatics results
    Ana Paula Christoff, Giuliano Netto Flores Cruz, Aline Fernanda Rodrigues Sereia, Laís EikoYamanaka, Paola Paz Silveira, Luiz Felipe Valter de Oliveira · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
24. The Use of Machine Learning and Explainable Artificial Intelligence in Gut Microbiome Research: A Scoping Review
    Hania Tourab, Laura Lopez-Perez, Peña Arroyo, Eleni I. Georga, Miguel Rujas, Francesca Romana Ponziani, Macarena Torrego-Ellacuría, Beatriz Merino Barbancho, Neri Niccolò Dei, Gastone Ciuti et al. · 2025 · IEEE Journal of Biomedical and Health Informatics
25. Differences in the Microbial Composition of Hemodialysis Patients Treated with and without β-Blockers
    Yi‐Ting Lin, Ting‐Yun Lin, Szu‐Chun Hung, Po‐Yu Liu, Wei‐Chun Hung, Wei‐Chung Tsai, Yi‐Chun Tsai, Rachel Ann Delicano, Yun‐Shiuan Chuang, Ping‐Hsun Wu et al. · 2021 · Journal of Personalized Medicine
26. Mock community as an in situ positive control for amplicon sequencing of microbiotas from the same ecosystem
    Giulio Galla, Nadine Praeg, Filippo Colla, Theresa Rzehak, Paul Illmer, Julia Seeber, Heidi C. Hauffe · 2023 · Scientific Reports
27. Garden soil bacteria transiently colonize gardeners' skin after direct soil contact
    Gwynne Á. Mhuireach, Kevin G. Van Den Wymelenberg, Gail Langellotto · 2023 · Urban Agriculture & Regional Food Systems
28. microBiomeGSM: the identification of taxonomic biomarkers from metagenomic data using grouping, scoring and modeling (G-S-M) approach
    Burcu Bakır-Güngör, Mustafa Temiz, Amhar Jabeer, Di Wu, Malik Yousef · 2023 · Frontiers in Microbiology
29. Leveraging human microbiomes for disease prediction and treatment
    Henok Ayalew Tegegne, Tor Savidge · 2024 · Trends in Pharmacological Sciences
30. Our Microbiome: On the Challenges, Promises, and Hype
    Sara Federici, Jotham Suez, Eran Elinav · 2020 · Results and problems in cell differentiation
31. Fast Computation of Latent Correlations
    Grace Yoon, Christian L. Müller, Irina Gaynanova · 2021 · Journal of Computational and Graphical Statistics
32. Hierarchical Meta-Storms enables comprehensive and rapid comparison of microbiome functional profiles on a large scale using hierarchical dissimilarity metrics and parallel computing
    Yufeng Zhang, Gongchao Jing, Yuzhu Chen, Jinhua Li, Xiaoquan Su · 2021 · Bioinformatics Advances
33. COVID-19: Reducing the risk via diet and lifestyle
    Jessica L. Campbell · 2022 · Journal of Chinese Integrative Medicine
34. The 4E approach to the human microbiome: Nested interactions between the gut-brain/body system within natural and built environments
    Palacios‐García, Ismael, Mhuireach, Gwynne A., Grasso‐Cladera, Aitana, Cryan, John F., Parada, Francisco J. · 2022 · BioEssays
35. Pregnancy-associated cardiovascular risks and postpartum care; an opportunity for interventions aiming at health preservation and disease prevention
    Nicole Wallin, Lina Bergman, Graeme Neil Smith · 2023 · Best Practice & Research Clinical Obstetrics & Gynaecology
36. Wise Roles and Future Visionary Endeavors of Current Emperor: Advancing Dynamic Methods for Longitudinal Microbiome Meta‐Omics Data in Personalized and Precision Medicine
    Sunghee Oh, Robert W. Li · 2024 · Advanced Science
37. Meta-analysis of gut microbiota alterations in patients with irritable bowel syndrome
    Xiaxi Li, Xiaoling Li, Haowei Xiao, Jiaying Xu, Jianquan He, Chuanxing Xiao, Bangzhou Zhang, Man Cao, Wenxin Hong · 2024 · Frontiers in Microbiology
38. Bioinformatics and machine learning in gastrointestinal microbiome research and clinical application
    Lindsay M. Hopson, Stephanie S. Singleton, John A. David, Atin Basuchoudhary, Stefanie Prast‐Nielsen, Pavel Klein, Sabyasachi Sen, Raja Mazumder · 2020 · Progress in molecular biology and translational science
39. A Single Human-Relevant Fast Food Meal Rapidly Reorganizes Metabolomic and Transcriptomic Signatures in a Gut Microbiota-Dependent Manner#
    Lucas J. Osborn, Danny Orabi, Maryam Goudarzi, Naseer Sangwan, Rakhee Banerjee, Amanda L. Brown, Anagha Kadam, Anthony D. Gromovsky, Pranavi Linga, Gail Cresci et al. · 2021 · Immunometabolism
40. Microbiomics: The Next Pillar of Precision Medicine and Its Role in African Healthcare
    Claudine K. Nkera-Gutabara, Robyn A. Kerr, Janine Scholefield, Scott Hazelhurst, Jerolen Naidoo · 2022 · Frontiers in Genetics
41. Westlake Gut Project: A consortium of microbiome epidemiology for the gut microbiome and health research in China
    Wanglong Gou, Yu‐Ming Chen, An Pan, Huijun Wang, Ke Zhang, Xiong‐Fei Pan, Yan He, Yuanqing Fu, Zengliang Jiang, Zelei Miao et al. · 2022 · Medicine in Microecology
42. Gut Dysbiosis in Experimental Kidney Disease: A Meta-Analysis of Rodent Repository Data
    David W. Randall, Julius E. Kieswich, Lesley Hoyles, Kieran McCafferty, Michael A. Curtis, Muhammed M. Yaqoob · 2023 · Journal of the American Society of Nephrology
43. The Microbiome in Advanced Melanoma: Where Are We Now?
    Dylan D. Fortman, Drew E. Hurd, Diwakar Davar · 2023 · Current Oncology Reports
44. Participant-collected household dust for assessing microorganisms and semi-volatile organic compounds in urban homes
    David Jarma, Juan Pedro Maestre, J. Sanchez, Samuel H. Brodfuehrer, Lynn E. Katz, Sharon D. Horner, Kerry A. Kinney · 2023 · The Science of The Total Environment
45. Food Insecurity Is Associated with Diet Quality in Pregnancy: A Cross-Sectional Study
    Bree Whiteoak, Samantha L. Dawson, Leonie Kaye Callaway, Susan de Jersey, Victoria A. Eley, Joanna L. Evans, Alka Kothari, Séverine Navarro, Danielle Gallegos · 2024 · Nutrients
46. Disease-associated microbiome signature species in the gut
    Junhui Li, Paul William O’Toole · 2024 · PNAS Nexus
47. Toward Multilabel Classification for Multiple Disease Prediction Using Gut Microbiota Profiles
    Zhi-An Huang, Pengwei Hu, Lun Hu, Zhu-Hong You, Kay Chen Tan, Yu‐An Huang · 2024 · IEEE Transactions on Neural Networks and Learning Systems
48. A pilot study of metaproteomics and DNA metabarcoding as tools to assess dietary intake in humans
    Brianna L. Petrone, Alexandria Bartlett, Sharon Jiang, Abigail Korenek, Simina Vintila, Christine B. Tenekjian, William S. Yancy, Lawrence A. David, Manuel Kleiner · 2024 · Food & Function
49. Evaluating the analytical performance of direct-to-consumer gut microbiome testing services
    Stephanie L. Servetas, Kristine Gierz, Diane Hoffmann, Jacques Ravel, Scott A. Jackson · 2026 · Communications Biology
50. Bacterial communities associated with cell phones and shoes
    David A. Coil, Russell Y. Neches, Jenna Lang, Guillaume Jospin, Wendy E. Brown, Darlene Cavalier, Jarrad Hampton‐Marcell, Jack A. Gilbert, Jonathan A. Eisen · 2020 · PeerJ
51. Galileo: Citizen-led Experimentation Using a Social Computing System
    Vineet Pandey, Tushar Koul, Chen Yang, Daniel T. McDonald, Mad Price Ball, Bastian Greshake Tzovaras, Rob D. Knight, Scott Klemmer · 2021 · CHI Conference on Human Factors in Computing Systems
52. Associations between Frequency of Culinary Herb Use and Gut Microbiota
    Alexandra Adorno Vita, Ryan McClure, Yuliya Farris, Robert Danczak, Anders Gundersen, Heather L. Zwickey, Ryan D. Bradley · 2022 · Nutrients
53. The gastrointestinal and microbiome impact of a resistant starch blend from potato, banana, and apple fibers: A randomized clinical trial using smart caps
    Douglas Allen Hanes, Brent Nowinski, Joseph J. Lamb, Ilona A. Larson, Daniel T. McDonald, Rob D. Knight, Se Jin Song, Noelle Patno · 2022 · Frontiers in Nutrition
54. Design and Implementation of a Culturally-Tailored Randomized Pilot Trial: Puerto Rican Optimized Mediterranean-Like Diet
    Josiemer Mattei, Claudia B. Díaz-Alvarez, Charmaine Alfonso, H. J. O’Neill, Carlos F. Ríos‐Bedoya, Vasanti Malik, Filipa Godoy‐Vitorino, Chao Cheng, Donna L. Spiegelman, Walter Churchill Willett et al. · 2022 · Current Developments in Nutrition
55. Docent
    Vineet Pandey, Justine W. Debelius, Embriette R. Hyde, Tomasz Kościółek, Rob D. Knight, Scott Klemmer · 2018 · ACM Conference on Learning @ Scale (L@S)
56. Feasibility of Collection and Analysis of Microbiome Data in a Longitudinal Randomized Trial of Community Gardening
    Mireia Gascón, Kylie K. Harrall, Alyssa Whitney Beavers, Deborah H. Glueck, Maggie A. Stanislawski, Katherine Alaimo, Angel Villalobos, James R. Hébert, Kelsey Dexter, Kaigang Li et al. · 2020 · Future Microbiology
57. A three-country analysis of the gut microbiome indicates taxon associations with diet vary by taxon resolution and population
    Lora A. Khatib, Se Jin Song, Amanda Hazel Dilmore, Jon G. Sanders, Caitriona Brennan, Alejandra Rios Hernandez, Tyler D. Myers, Renee E. Oles, Sawyer Farmer, Charles Cowart et al. · 2025 · mSystems
58. Mechanism of Microbiota-Gut-Brain in Perimenopausal Depression: An Inflammatory Perspective
    Xia Yu, Yi Zuo, Yang Yang, Wei Cheng, Mingxiu Shi, Luona Cheng, Qixiang Shao, Yongjun Xu, Li Chen · 2025 · Expert Reviews in Molecular Medicine
59. Accurate profiling of microbial communities for shotgun metagenomic sequencing with Meteor2
    Amine Ghozlane, Florence Thirion, Florian Plaza Oñate, Franck Gauthier, Emmanuelle Le Chatelier, Anita Annamalé, Mathieu Almeida, Stanislav Dusko Ehrlich, Nicolas Pons · 2025 · Microbiome
60. Trialling a microbiome-targeted dietary intervention in children with ADHD—the rationale and a non-randomised feasibility study
    Kate Lawrence, Kyriaki Myrissa, Miguel A Toribio-Mateas, Lori Minini, Alice M. Gregory · 2022 · Pilot and Feasibility Studies
61. Optimizing UniFrac with OpenACC Yields Greater Than One Thousand Times Speed Increase
    I. Sfiligoi, George Armstrong, Antonio González, Daniel T. McDonald, Rob D. Knight · 2022 · mSystems
62. Absence of enterotypes in the human gut microbiomes reanalyzed with non-linear dimensionality reduction methods
    Ivan Bulygin, Vladislav M. Shatov, Anton Rykachevsky, Arsenii Raiko, Alexander Bernstein, Evgeny Vladimirovich Burnaev, Mikhail Sergeevich Gelfand · 2023 · PeerJ
63. Gut microbiome in two high-altitude bird populations showed heterogeneity in sex and life stage
    Mingwan Sun, Naerhulan Halimubieke, Bao‐Zhu Fang, José O. Valdebenito, Xieyang Xu, Samuel Keir Sheppard, Tamás Székely, Tongzuo Zhang, Shunfu He, Rong Lu et al. · 2024 · FEMS Microbes
64. Impacts of non-nutritive sweeteners on the human microbiome
    Katti R. Crakes, Lauren Questell, Subah Soni, Jotham Suez · 2025 · Immunometabolism
65. IMPARO: inferring microbial interactions through parameter optimisation
    Rajith Vidanaarachchi, Marnie Evelyn Shaw, Sen-Lin Tang, Saman Kumara Halgamuge · 2020 · BMC Molecular and Cell Biology
66. Negative binomial factor regression with application to microbiome data analysis
    Aditya Kumar Mishra, Christian L. Müller · 2022 · Statistics in Medicine
67. A Freeze-Dried Cranberry Powder Consistently Enhances SCFA Production and Lowers Abundance of Opportunistic Pathogens In Vitro
    Christina Khoo, Cindy Duysburgh, Massimo Marzorati, Pieter Van den Abbeele, Derek Zhang · 2022 · BioTech
68. Binary Metabolic Phenotypes and Phenotype Diversity Metrics for the Functional Characterization of Microbial Communities
    Stanislav N. Iablokov, Pavel S. Novichkov, Andrei L. Osterman, Dmitry A. Rodionov · 2021 · Frontiers in Microbiology
69. Reference Data Based Insights Expand Understanding of Human Metabolomes
    Julia M. Gauglitz, Wout Bittremieux, Candace Lareine Williams, Kelly C. Weldon, Morgan W. Panitchpakdi, Francesca Di Ottavio, Christine M. Aceves, Elizabeth Brown, Nicole C. Sikora, Alan K. Jarmusch et al. · 2020 · SSRN Electronic Journal
70. Whole-Person, Urobiome-Centric Therapy for Uncomplicated Urinary Tract Infection
    Garofalo, Luciano, Nakama, Claudia, Hanes, Douglas, Zwickey, Heather · 2022 · Antibiotics
71. Characterization of the upper respiratory tract microbiota in Chilean asthmatic children reveals compositional, functional, and structural differences
    Ignacio Ramos-Tapia, Katiuska Lídice Reynaldos-Grandón, Marcos Pérez‐Losada, Eduardo Castro‐Nallar · 2023 · Frontiers in Allergy
72. PM-CNN: microbiome status recognition and disease detection model based on phylogeny and multi-path neural network
    Qiangqiang Wang, Xiaoqian Fan, Shunyao Wu, Xiaoquan Su · 2024 · Bioinformatics Advances
73. Alteration of gut microbiome in goslings infected with goose astrovirus
    Haiqin Li, Qi Su, Duanfeng Fu, Haoyu Huang, Zhihua Lü, Cheng Huang, Yun-Feng Chen, Meifang Tan, Jiangnan Huang, Zhaofeng Kang et al. · 2024 · Poultry Science
74. Normal Gut Microbiomes in Diverse Populations: Clinical Implications
    Omprakash Shete, Tarini Shankar Ghosh · 2024 · Annual Review of Medicine
75. Comparative study of the gut microbiomes between Western and Indigenous cultures – Implications for health and disease
    K Sreenikitha, Santanu Das, Tahila Andrighetti, Padhmanand Sudhakar · 2025 · The Microbe
76. Prebiotic fiber enteral supplementation after allogeneic transplantation: feasibility and impact on the microbiome
    Sarah Andersen, Glen Kennedy, Merrilyn Banks, Bernadine M. Flanagan, Andrea S. Henden · 2025 · Blood Advances
77. Personalized Clostridioides difficile colonization risk prediction and probiotic therapy assessment in the human gut
    Alex V. Carr, Nitin S. Baliga, Christian Diener, Sean M. Gibbons · 2023 · Cell Systems
78. Challenges in Determining the Role of Microbiome Evolution in Barrett’s Esophagus and Progression to Esophageal Adenocarcinoma
    Caitlin Guccione, Rena H. Yadlapati, Shailja C. Shah, Rob D. Knight, Kit Curtius · 2021 · Microorganisms
79. Panorama dos principais estudos sobre ciência cidadã
    Diny Gabrielly de Miranda Martins, Eloísa Helena de Souza Cabral · 2021 · ForScience
80. Acceptability of Plant-Based Diets for People with Chronic Kidney Disease: Perspectives of Renal Dietitians
    Jordan Stanford, Mikaela Zuck, Anita Stefoska‐Needham, Karen Elizabeth Charlton, Kelly Lambert · 2022 · Nutrients
81. Transcript and blood-microbiome analysis towards a blood diagnostic tool for goats affected by Haemonchus contortus
    Yonathan Tilahun, Jessica Quijada, Felicia Johnson, Charles Lett, Kayla E. Smith, Terry Allen Gipson, Malcolm L. McCallum, Peter R. Hoyt, Andrew Tritt, Archana Yadav et al. · 2022 · Scientific Reports
82. DNA Metabarcoding Across Disciplines: Sequencing Our Way to Greater Understanding Across Scales of Biological Organization
    Anna Forsman, Anna E. Savage, Brandon D. Hoenig, Michelle R. Gaither · 2022 · Integrative and Comparative Biology
83. What is the climate footprint of therapeutic diets for people with chronic kidney disease? Results from an Australian analysis
    Nathan Clay, Karen Elizabeth Charlton, Anita Stefoska‐Needham, Emma Heffernan, Hicham I. Cheikh Hassan, Xiaotao Jiang, Jordan Stanford, Kelly Lambert · 2023 · Journal of Human Nutrition and Dietetics
84. Soil Microbiome Influences Human Health In the Context of Climate Change
    Rohini Mattoo, Suman Mallikarjuna · 2023 · Future Microbiology
85. Understanding Users Information Needs and Collaborative Sensemaking of Microbiome Data
    Jennifer Otiono, Monsurat Olaosebikan, Orit Shaer, Oded Nov, Mad Price Ball · 2019 · Proceedings of the ACM on Human-Computer Interaction
86. Campaign-Based Citizen Science for Environmental Mycology: The Science Solstice and Summer Soil-Stice Projects to Assess Drug Resistance in Air- and Soil-Borne Aspergillus fumigatus
    Jennifer Shelton, Matthew C. Fisher, Andrew C. Singer · 2020 · Citizen Science Theory and Practice
87. Evaluating supervised and unsupervised background noise correction in human gut microbiome data
    Leah Briscoe, Brunilda Balliu, Sriram Sankararaman, Eran Halperin, Nandita R. Garud · 2022 · PLoS Computational Biology
88. Personalized Clostridioides difficile engraftment risk prediction and probiotic therapy assessment in the human gut
    Alex V. Carr, Nitin S. Baliga, Christian Diener, Sean M. Gibbons · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
89. Exploring the role of normalization and feature selection in microbiome disease classification pipelines
    Ignacio Garach Vélez, Francisco Manuel Ortuño, Ignacio Rojas Ruiz, Luis Javier Herrera · 2025 · GigaScience
90. A microbial causal mediation analytic tool for health disparity and applications in body mass index
    Chan Wang, Jiyoung Ahn, Thaddeus Tarpey, Stella S. Yi, Richard B. Hayes, Huilin Li · 2023 · Microbiome
91. Gut microbial ecology and exposome of a healthy Pakistani cohort
    Farzana Gul, Hilde Herrema, Mark Davids, Ciara Keating, Arshan Nasir, Umer Zeeshan Ijaz, Sundus Javed · 2024 · Gut Pathogens
92. Quantifying variation across 16S rRNA gene sequencing runs in human microbiome studies
    Andrew J. Hoisington, Christopher E. Stamper, Joseph Christopher Ellis, Christopher A. Lowry, Lisa A. Brenner · 2024 · Applied Microbiology and Biotechnology
93. Island biogeography theory provides a plausible explanation for why larger vertebrates and taller humans have more diverse gut microbiomes
    Katherine Ramos Sarmiento, Alex V. Carr, Christian Diener, Kenneth J. Locey, Sean M. Gibbons · 2024 · The ISME Journal
94. Designing a behaviour change intervention using COM‐B and the Behaviour Change Wheel: Co‐designing the Healthy Gut Diet for preventing gestational diabetes
    Nina J. L. Meloncelli, HANNAH M. O'CONNOR, Susan de Jersey, Alita Rushton, Kelsey Pateman, Samantha Gallaher, Lauren N. Kearney, Shelley Ann Wilkinson · 2024 · Journal of Human Nutrition and Dietetics
95. The microbiome and the eye: a new era in ophthalmology
    Simerdip Kaur, Bhupendra C. K. Patel, Alanna Collen, Raman Malhotra · 2024 · Eye
96. Dirichlet-tree multinomial mixtures for clustering microbiome compositions
    Jialiang Mao, Li Ma · 2022 · The Annals of Applied Statistics
97. Achieving pan-microbiome biological insights via the dbBact knowledge base
    Amnon Amir, Eitan Ozel, Yael Haberman, Noam Shental · 2023 · Nucleic Acids Research
98. Results from a pilot study on the oral microbiome in children and adolescents with chronic nonbacterial osteomyelitis
    Mona Zeus, Stefan Janssen, Hans‐Jürgen Laws, Ute Fischer, Arndt Borkhardt, Prasad T. Oommen · 2021 · Zeitschrift für Rheumatologie
99. A proposal for the reference intervals of the Italian microbiota “scaffold” in healthy adults
    Davide Sisti, Valerio Pazienza, Fabio Piccini, Barbara Citterio, Wally Baffone, Sabrina Donati Zeppa, Francesca Biavasco, Emilia Prospero, Antonio De Luca, Marco Artico et al. · 2022 · Scientific Reports
100. Microbial Journey: Mount Everest to Mars
     Utkarsh Sood, Gauri Garg Dhingra, Shailly Anand, Princy Hira, Roshan Kumar, Jasvinder Kaur, Mansi Verma, Nirjara Singhvi, Sukanya Lal, Charu Dogra Rawat et al. · 2022 · Indian Journal of Microbiology