American Gut: an Open Platform for Citizen-Science Microbiome Research

McDonalda, Daniel, Hyde, Embriette, Debelius, Justine W., Morton, James T., Gonzalez, Antonio, Ackermann, Gail, Aksenov, Alexander A., Behsaz, Bahar +51 more·2018·mSystems

Cited by (884)

Items 701–800 of 884

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  2. Information About the Gut Microbiome’s Connection to Health and Disease can Impact Knowledge: Feasibility of an Education-Based Intervention in a General Internal Medicine Clinic
    Benjamin Knudsen, Sasha Narain, Brad B. Moore, Patrick G. Corr, Leigh A. Frame · 2025 · American Journal of Lifestyle Medicine
  3. The role of microbiome in gut-brain-axis dysbiosis causing depression: From mechanisms to treatment
    Junqiao Mi, Julia Morys, Marta Maria Nowacka-Chmielewska, Małgorzata Burek · 2025 · International review of neurobiology
  4. Safety evaluation of Akkermansia massiliensis sp. nov. DSM 33459
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  5. Predicting gut microbiota dynamics in obese individuals from cross-sectional data
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  6. Determinants of vegetable food choice in families with limited food budgets in England: a focus group study to inform vegetable promotion programmes
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  7. Repopulation of the gut microbiota after a screening colonoscopy
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  8. HMFGraph: Novel Bayesian approach for recovering biological networks
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  9. The Bicocca sampling days model: a participatory citizen science approach to environmental microbiome research and education
    Giulia Ghisleni, Alice Armanni, Sara Fumagalli, Asia Rosatelli, Yodit Maria Bacchi, Cristian Barillari, Denyse A Battista, Michela Benocci, Aurora Brunelli, Federica Cammarano et al. · 2025 · ISME Communications
  10. Shipped and shifted: modeling collection-induced bias in microbiome multi-omics using a tractable fermentation system
    A Meyer, Jan Patrick Tan, Mihnea Paul Mihaila, Michelle Neugebauer, Laura Nyström, Nicholas A. Bokulich · 2026 · npj Biofilms and Microbiomes
  11. Gut microbiota responses to complementary food sources differ by milk feeding type
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  12. Interactions Between Plant Proteins and Gut Microbiota as Determinants of Intestinal Health
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  13. Gut microbiome in sepsis: from dysbiotic biomarker to precision and palliative decision-making
    Li-min Wang, Chu Chen, Jiancuo Danzheng, Jing Zhao · 2026 · Frontiers in Medicine
  14. Moving from a taxonomic to a functional perspective in global microbiome analysis requires optimizing multiplexing ratios
    Kinga Zielińska, Kateryna Pantiukh, Elin Org, Paweł P. Łabaj, Tomasz Kościółek · 2026 · mSystems
  15. Participant engagement and feedback in microbiome projects: a case of AWI-Gen 2
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  17. Data generation and analysis with SIRIUS 4 on two biological case studies
    Pieter C. Dorrestein, Alexey V. Melnik, Alexander A. Aksenov · 2019 · Protocol Exchange
  18. Exploring Computational Inference of Microbial Interactions and their Dynamics
    Rajith Vidanaarachchi, Marnie Evelyn Shaw, Saman Kumara Halgamuge · 2019 · IEEE International Conference on Industrial and Information Systems (ICIIS)
  19. Determinants of the Gut Microbiota
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  20. Fecal Bacteria as an Addition to the Lineup of Objective Dietary Biomarkers
    Cara Lea Frankenfeld · 2020 · Journal of Nutrition
  21. Data Science of Microbiome: Does Gender Matter
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  22. Current Progress of Bioinformatics for Human Health
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  23. Reorganizing heterogeneous information from host–microbe interaction reveals innate associations among samples
    Hongfei Cui · 2023 · Quantitative Biology
  24. Systems Biology in Understanding the Human Gut Microbiome and Related Diseases Highlighting Metabolic Modeling and Analysis
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  25. Temporal patterns of gut microbiota in lemurs (Eulemur rubriventer) living in intact and disturbed habitats in a novel sample type
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  27. Overview of microbiota gut-brain-axis
    Ruchika Sharma, Kuttiappan Anitha, Neeraj Mishra, Anoop Kumar · 2025 · Elsevier eBooks
  28. It Bugs Me: Critical Encounters with Direct-to-Consumer Microbiome Testing
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  30. Long Reads Enable Accurate Estimates of Complexity of Metagenomes
    Anton Bankevich, Pavel A. Pevzner · 2018 · Lecture notes in computer science
  31. ForestDSH: a universal hash design for discrete probability distributions
    Arash Gholami Davoodi, Sean Chang, Hyun Gon Yoo, Anubhav Baweja, Mihir Mongia, Hosein Mohimani · 2021 · Data Mining and Knowledge Discovery
  32. Untersuchung des Dickdarm-Mikrobioms in der klinischen Forschung
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  33. A Crowdsourced Gameplay for Whole-Genome Assembly via Short Reads
    Gihan Gamage, Indika Perera, Dulani Meedeniya, Anuradha Welivita · 2020 · International Journal of Online and Biomedical Engineering (iJOE)
  34. Direct interaction network inference for compositional data via codaloss
    Liang Chen, Shun He, Yuyao Zhai, Minghua Deng · 2020 · Journal of Bioinformatics and Computational Biology
  35. Selecting the most promising local treatments: retrospective treatment-outcome surveys and reverse pharmacology
    Joëlle Houriet, Jean‐Luc Wolfender, Bertrand Graz · 2022 · Elsevier eBooks
  36. Spotlight: An Interview with Dr. Christopher A. Lowry, on the Convergence of Microbes, Nature, and Mental Health
    Alan C Logan, Christopher A. Lowry · 2022 · Challenges
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    Caspar Bundgaard‐Nielsen, Nadia Ammitzbøll, Yusuf Abdi Isse, Abdisalam Muqtar, Ann-Maria Jensen, Peter Derek Christian Leutscher, Louise Thomsen Schmidt Arenholt, Søren Hagstrøm, Suzette Sørensen · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
  38. Microbiome meets classical microbiology: quantifying sample CFU using 16S rRNA gene sequencing data
    Giuliano Netto Flores Cruz, Ana Paula Christoff, Luiz Felipe Valter de Oliveira · 2020
  39. Designer Microbiomes
    Alfie Gleeson, Abigail Sawyer · 2018 · BioTechniques
  40. Microbiome Features Associated with Performance Measures in Non-Athletic and Athletic Individuals
    Kinga Humińska‐Lisowska, Kinga Zielińska, Jan Mieszkowski, Monika Michałowska‐Sawczyn, Paweł Cięszczyk, Paweł P. Łabaj, Bartosz Wasąg, Barbara Frączek, Anna Grzywacz, Andrzej Kochanowicz et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  41. Predictive modeling of microbial data with interaction effects
    Mara Stadler, Roberto Olayo-Alarcón, Jacob Bien, Christian L. Müller · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  42. A three-country analysis of the gut microbiome indicates taxon associations with diet vary by location and strain
    Lora A. Khatib, Se Jin Song, Amanda Hazel Dilmore, Jon G. Sanders, Caitriona Brennan, Alejandra Ríos Hernández, Tyler D. Myers, Renee E. Oles, Sawyer Farmer, Charles Cowart et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  43. Comparative study of sample storage conditions on gut dysbiosis in peripheral artery disease
    Sarbjeet Niraula, Imadh Khan, Jonathan Jung, Spencer L. Stirewalt, Megan E. Alagna, James Du, Liqun Xiong, Ayman Elmasri, Erik Wu, Patrick Casey Seed et al. · 2025 · Research Square
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    Iyunoluwa J. Ademola‐Popoola, Kathleen E Grogen, Muslihudeen A. Abdul‐Aziz, K. Ta Christine, Karen Tang, Ran Blekhman, Luis Bruno Barreiro, George H. Perry, Laura S. Weyrich · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
  45. More Than Meets the Eye: Our Microbiome May Be Key to Decreasing Infection
    Tamara Wurst, Sharon F. Terry · 2019 · Genetic Testing and Molecular Biomarkers
  46. Microbiome and Melanoma
    Reetakshi Arora, Amanda Hermann, Jennifer Ann Wargo · 2019 · Springer eBooks
  47. The Role of Omic Technologies in the Study of the Human Gut Microbiome
    Partho Sen, Santosh Lamichhane, Alex M. Dickens, Matej Orešič · 2019 · Elsevier eBooks
  48. Peer Review #3 of "Bacterial communities associated with cell phones and shoes (v0.2)"
    2020 · PeerJ
  49. Peer Review #3 of "Bacterial communities associated with cell phones and shoes (v0.1)"
    2020 · PeerJ
  50. High fiber, whole foods dietary intervention alters the human gut microbiome but not fecal short-chain fatty acids
    Andrew S. Oliver, Alexander B. Chase, Claudia Weihe, Stephanie B. Orchanian, Stefan F. Riedel, Clark L. Hendrickson, Mi Lay, Julia Massimelli Sewall, Jennifer B. H. Martiny, Katrine Whiteson · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  51. Gut microbiota in psychiatric disorders: Better understanding or more complexity to be resolved?
    Błażej Misiak, Jerzy Samochowiec, Wojciech M. Marlicz, Igor Łoniewski · 2021 · Progress in Neuro-Psychopharmacology and Biological Psychiatry
  52. Correcting for Background Noise Improves Phenotype Prediction from Human Gut Microbiome Data
    Leah Briscoe, Brunilda Balliu, Sriram Sankararaman, Eran Halperin, Nandita R. Garud · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  53. Chronic Exposure and the Risk of Building Antibiotic Resistance in Rural Communities of the Developing World
    Mark S. Coyne · 2019 · World Journal of Agriculture and Soil Science
  54. Functional genome and microbiome in blood of goats affected by the gastrointestinal pathogen Haemonchus contortus
    Yonathan Tilahun · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  55. Multi-sample estimation of centered log-ratio matrix in microbiome studies
    Yezheng Li, Hongzhe Li, Yuanpei Cao · 2021 · arXiv (Cornell University)
  56. Intestinal microbiota in health and disease – Seeding multidisciplinary research in Germany
    Dirk Haller · 2021 · International Journal of Medical Microbiology
  57. DeepBiome: a phylogenetic tree informed deep neural network for microbiome data analysis
    Jing Zhai, Youngwon Choi, Yin Chen, Kenneth S. Knox, Homer L. Twigg, Joong‐Ho Won, Hua Zhou, Jin J. Zhou · 2020 · Research Square
  58. Diet and the Gut Microbiota in the Adulthood
    Francisco Guarner · 2021 · Elsevier eBooks
  59. Inference of Microbial Interactions Using Copula Models with Mixture Margins
    Rebecca A. Deek, Hongzhe Li · 2021 · arXiv (Cornell University)
  60. 腰痛患者の心理・社会的要因に対するYellow Flags Screening Instrumentの妥当性の検証:心理・社会的要因と理学療法期間,疼痛強度の関係
    秀平 杉山, 武 杉浦, 裕介 久保, かおり 小堀, 誠 根地嶋 · 2013 · 理学療法学Supplement
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  63. An integrative analysis of the biological clock hypothesis in human gut microbiome
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  64. Biological Sensors for Microbiome Diagnostics
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  66. Peer Review #2 of "Bacterial communities associated with cell phones and shoes (v0.1)"
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  67. Faculty Opinions recommendation of GABA-modulating bacteria of the human gut microbiota.
    Dietmar Helmut Pieper · 2019 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
  68. Peer Review #1 of "Bacterial communities associated with cell phones and shoes (v0.2)"
    2020 · PeerJ
  69. Multi-cohort analysis of depression-associated gut microbiota sheds insight on bacterial biomarkers across populations
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  70. Nutrition and Microbiome: In Preparation for Pregnancy
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  71. The gut microbiome as a therapeutic target in systemic disease
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  72. Gut and neurodevelopment: The role of gut microbiota dysbiosis in attention-deficit hyperactivity disorder and autism spectrum disorder
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  73. Esophageal dysbiosis and neoplasia: Moving from Barrett's esophagus to adenocarcinoma
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  74. Estimating the overall fraction of phenotypic variance attributed to high-dimensional predictors measured with error
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  77. Age modifies the association between pet ownership and cardiovascular disease
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  78. Gut Microbial Mechanisms in Nutrition and Health
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  79. Microbial dispersion in the human gut through the lens of fecal transplant
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