American Gut: an Open Platform for Citizen-Science Microbiome Research

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Items 101–200 of 884

1. Context-aware dimensionality reduction deconvolutes gut microbial community dynamics
   Cameron Martino, Liat Shenhav, Clarisse A. Marotz, George Armstrong, Daniel T. McDonald, Yoshiki Vázquez‐Baeza, James T. Morton, Lingjing Jiang, Maria Gloria Domínguez-Bello, Austin D.-E. Swafford et al. · 2020 · Nature Biotechnology
2. The gut microbiota and depressive symptoms across ethnic groups
   Jos A. Bosch, Max Nieuwdorp, Aeilko H. Zwinderman, Mélanie Deschasaux, Djawad Radjabzadeh, Robert Kraaij, Mark Davids, Susanne R. de Rooij, Anja Lok · 2022 · Nature Communications
3. Temporal, Environmental, and Biological Drivers of the Mucosal Microbiome in a Wild Marine Fish, Scomber japonicus
   Jeremiah J. Minich, Semar Petrus, Julius D. Michael, Todd P. Michael, Rob D. Knight, Eric E. Allen · 2020 · mSphere
4. Multiple Sclerosis-Associated Changes in the Composition and Immune Functions of Spore-Forming Bacteria
   Egle Cekanaviciute, Anne‐Katrin Pröbstel, Anna Sophie Thomann, Tessel F. Runia, Patrizia Casaccia, Ilana Katz Sand, Elizabeth Crabtree, Sneha Singh, John Morrissey, Patrick Barba et al. · 2018 · mSystems
5. Use of Whole Genome Sequencing by the Federal Interagency Collaboration for Genomics for Food and Feed Safety in the United States
   Eric L. Stevens, Heather A. Carleton, Jennifer Beal, Glenn E. Tillman, Rebecca L. Lindsey, A.C. Lauer, Arthur Pightling, Karen G. Jarvis, Andrea Ottesen, Padmini Ramachandran et al. · 2022 · Journal of Food Protection
6. A conserved interdomain microbial network underpins cadaver decomposition despite environmental variables
   Zachary M. Burcham, Aeriel D. Belk, Bridget B. McGivern, Amina Bouslimani, Parsa Ghadermazi, Cameron Martino, Liat Shenhav, Anru R. Zhang, Pixu Shi, Alexandra L. Emmons et al. · 2024 · Nature Microbiology
7. How important are fatty acids in human health and can they be used in treating diseases?
   Leon M. T. Dicks · 2024 · Gut Microbes
8. Challenges and update on fungal endophytes: classification, definition, diversity, ecology, evolution and functions
   Chun-Fang Liao, Mingkwan Doilom, Rajesh Jeewon, Kevin David Hyde, Ishara S. Manawasinghe, Kandawatte W. Thilini Chethana, Abhaya Balasuriya, SUBASINGHA A.D. THAKSHILA, Mei Luo, Ausana Mapook et al. · 2025 · Fungal Diversity
9. The Microbiota–Gut–Brain Axis in Alzheimer’s Disease: A Review of Taxonomic Alterations and Potential Avenues for Interventions
   Emily R. Murray, Mylon Kemp, Tanya T. Nguyen · 2022 · Archives of Clinical Neuropsychology
10. Gut microbiome-based supervised machine learning for clinical diagnosis of inflammatory bowel diseases
    Ishan Manandhar, Ahmad Alimadadi, Sachin Aryal, Patricia B. Munroe, Bina Joe, Xi Cheng · 2021 · American Journal of Physiology-Gastrointestinal and Liver Physiology
11. MicroRNAs in Tumor Cell Metabolism: Roles and Therapeutic Opportunities
    Abraham Pedroza‐Torres, Sandra Lorena Romero-Cordoba, Montserrat Justo-Garrido, Iván Salido-Guadarrama, Rubén Rodríguez‐Bautista, Sarita Montaño, Rodolfo Muñiz-Mendoza, Cristian Arriaga-Canon, Verónica Fragoso‐Ontiveros, Rosa María Álvarez-Gómez et al. · 2019 · Frontiers in Oncology
12. Red Wine Consumption Associated With Increased Gut Microbiota α-Diversity in 3 Independent Cohorts
    Caroline Ivanne Le Roy, Philippa M. Wells, Jiyeon Si, Jeroen Raes, Jordana T. Bell, Tim D. Spector · 2019 · Gastroenterology
13. Convergence of human and Old World monkey gut microbiomes demonstrates the importance of human ecology over phylogeny
    Katherine Ryan Amato, Elizabeth K. Mallott, Daniel T. McDonald, Nathaniel Jay Dominy, Tony L. Goldberg, Joanna E. Lambert, Larissa Swedell, Jessica L. Metcalf, Andres M. Gomez, Gillian A. O. Britton et al. · 2019 · Genome biology
14. BUDDY: molecular formula discovery via bottom-up MS/MS interrogation
    Shipei Xing, Sam Shen, Banghua Xu, Xiaoxiao Li, Tao Huan · 2023 · Nature Methods
15. Metabolic Modeling of Human Gut Microbiota on a Genome Scale: An Overview
    Partho Sen, Matej Orešič · 2019 · Metabolites
16. Role of the gut microbiome for cancer patients receiving immunotherapy: Dietary and treatment implications
    Karla A. Lee, Heather May Shaw, Veronique A. Bataille, Paul Nathan, Tim D. Spector · 2020 · European Journal of Cancer
17. Assessment of the microbiome during bacteriophage therapy in combination with systemic antibiotics to treat a case of staphylococcal device infection
    Andre Mu, Daniel T. McDonald, Alan K. Jarmusch, Cameron Martino, Caitriona Brennan, MacKenzie Bryant, Gregory Humphrey, Julia Toronczak, Tara Schwartz, Dominic Nguyen et al. · 2021 · Microbiome
18. Gut microbiome in Schizophrenia: Altered functional pathways related to immune modulation and atherosclerotic risk
    Tanya T. Nguyen, Tomasz Kościółek, Rebecca E. Daly, Yoshiki Vázquez‐Baeza, Austin D.-E. Swafford, Rob D. Knight, Dilip V. Jeste · 2020 · Brain Behavior and Immunity
19. The microbiome in cancer
    Anqi Lin, Minying Xiong, Aimin Jiang, Li‐Hua Huang, Hank Z. H. Wong, Suyin Feng, Chunyan Zhang, Haijun Yu, Li Chen, Hao Chi et al. · 2025 · iMeta
20. Association of dietary patterns with the gut microbiota in older, community-dwelling men
    Shikany, James M, Demmer, Ryan T, Johnson, Abigail J, Fino, Nora F, Meyer, Katie, Ensrud, Kristine E, Lane, Nancy E, Orwoll, Eric S, Kado, Deborah M, Zmuda, Joseph M et al. · 2019 · The American Journal of Clinical Nutrition
21. Multi-omic Analysis of the Interaction between Clostridioides difficile Infection and Pediatric Inflammatory Bowel Disease
    Frederic D. Bushman, Máire A. Conrad, Yue Ren, Chunyu Zhao, Christopher Gu, Christopher J. Petucci, Minsoo Kim, Arwa A. Abbas, Kevin J. Downes, Nina Devas et al. · 2020 · Cell Host & Microbe
22. Representation learning applications in biological sequence analysis
    Hitoshi Iuchi, Taro Matsutani, Keisuke Yamada, Natsuki Iwano, Shunsuke Sumi, Shion Hosoda, Shitao Zhao, Tsukasa Fukunaga, Michiaki Hamada · 2021 · Computational and Structural Biotechnology Journal
23. Can we harness the microbiota to enhance the efficacy of cancer immunotherapy?
    Finlay, B. Brett, Goldszmid, Romina, Honda, Kenya, Trinchieri, Giorgio, Wargo, Jennifer, Zitvogel, Laurence · 2020 · Nature Reviews Immunology
24. Effects of Low and High FODMAP Diets on Human Gastrointestinal Microbiota Composition in Adults with Intestinal Diseases: A Systematic Review
    Doris Vandeputte, Marie Joossens · 2020 · Microorganisms
25. Enhancing untargeted metabolomics using metadata-based source annotation
    Julia M. Gauglitz, Kiana West, Wout Bittremieux, Candace Lareine Williams, Kelly C. Weldon, Morgan W. Panitchpakdi, Francesca Di Ottavio, Christine M. Aceves, Elizabeth A. R. Brown, Nicole C. Sikora et al. · 2022 · Nature Biotechnology
26. Impact of DNA Extraction Method on Variation in Human and Built Environment Microbial Community and Functional Profiles Assessed by Shotgun Metagenomics Sequencing
    Hui‐Yu Sui, Ana A. Weil, Edwin Nuwagira, Firdausi Qadri, Edward Thomas Ryan, Melissa Paola Mezzari, Wanda Phipatanakul, Peggy S. Lai · 2020 · Frontiers in Microbiology
27. Gut microbiota associations with diet in irritable bowel syndrome and the effect of low FODMAP diet and probiotics
    Heidi Maria Staudacher, Matthias Scholz, Miranda C. E. Lomer, Frances S. E. Ralph, Peter Miles Irving, James Oliver Lindsay, Francesca Fava, Kieran Michael Tuohy, Kevin Whelan · 2020 · Clinical Nutrition
28. A posteriori dietary patterns better explain variations of the gut microbiome than individual markers in the American Gut Project
    Aurélie Cotillard, Agnès Méheust, Nicole S. Litwin, Soline Chaumont, Mathilde Saccareau, Franck Lejzerowicz, Julien Tap, Hana Koutníková, Diana Gutierrez Lopez, Daniel T. McDonald et al. · 2021 · American Journal of Clinical Nutrition
29. Gut microbiome in serious mental illnesses: A systematic review and critical evaluation
    Tanya T. Nguyen, Hugh Hathaway, Tomasz Kościółek, Rob D. Knight, Dilip V. Jeste · 2019 · Schizophrenia Research
30. Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads
    Jon G. Sanders, Sergey Nurk, Rodolfo A. Salido, Jeremiah J. Minich, Zhenjiang Zech Xu, Qiyun Zhu, Cameron Martino, Marcus W. Fedarko, Timothy D. Arthur, Feng Chen et al. · 2019 · Genome biology
31. Experimental colonization with Blastocystis ST4 is associated with protective immune responses and modulation of gut microbiome in a DSS-induced colitis mouse model
    Lei Deng, Łukasz Wojciech, Chin Wen Png, Eileen Yiling Koh, Thet Tun Aung, Dorinda Yan Qin Kioh, Eric Chun Yong Chan, Benoît Malleret, Yongliang Zhang, Guangneng Peng et al. · 2022 · Cellular and Molecular Life Sciences
32. The Athlete Gut Microbiome and its Relevance to Health and Performance: A Review
    Marcus O’Brien, Órla O’Sullivan, Marcus Joakim Claesson, Paul D. Cotter · 2022 · Sports Medicine
33. Guidelines for Transparency on Gut Microbiome Studies in Essential and Experimental Hypertension
    Francine Z. Marques, Hamdi A. Jama, Kirill Tsyganov, Paul A. Gill, Dakota R. Rhys-Jones, Rikeish R. Muralitharan, Jane G. Muir, Andrew J. Holmes, Charles Reay Mackay · 2019 · Hypertension
34. Effects of exercise frequency on the gut microbiota in elderly individuals
    Qiwei Zhu, Shangfei Jiang, Guankui Du · 2020 · MicrobiologyOpen
35. Interactions between soil properties, fungal communities, the soybean cyst nematode, and crop yield under continuous corn and soybean monoculture
    Noah Strom, Weiming Hu, Deepak Haarith, Senyu Chen, Kathryn E. Bushley · 2019 · Applied Soil Ecology
36. Evaluation of the Effect of Storage Methods on Fecal, Saliva, and Skin Microbiome Composition
    Clarisse A. Marotz, Kellen J. Cavagnero, Se Jin Song, Daniel T. McDonald, Stephen Wandro, Greg C. Humphrey, MacKenzie Bryant, Gail L. Ackermann, Edgar Diaz, Rob D. Knight · 2021 · mSystems
37. Interspecies commensal interactions have nonlinear impacts on host immunity
    Tyler Rice, Agata Anna Bielecka, Mytien T. Nguyen, Connor E. Rosen, Deguang Song, Nicole D. Sonnert, Yi Yang, Yiyun Cao, Varnica Khetrapal, Jason Catanzaro et al. · 2022 · Cell Host & Microbe
38. Gut microbiota signatures in inflammatory bowel disease
    Marie Vibeke Vestergaard, Kristine Højgaard Allin, Carsten Eriksen, Oliwia Zakerska‐Banaszak, Ramesh Pulendran Arasaradnam, Mohammad Tauqeer Alam, Karsten Kristiansen, Susanne Brix, Tine Jess · 2023 · United European Gastroenterology Journal
39. SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment
    Clarisse A. Marotz, Pedro Belda‐Ferre, Farhana Ali, Promi Das, Shi Wei Huang, Kalen Cantrell, Lingjing Jiang, Cameron Martino, Rachel E. Diner, Gibraan Rahman et al. · 2021 · Microbiome
40. From taxonomy to metabolic output: what factors define gut microbiome health?
    Wilmanski, Tomasz, Rappaport, Noa, Diener, Christian, Gibbons, Sean M., Price, Nathan D. · 2021 · Gut Microbes
41. Pharmacomicrobiomics: The Holy Grail to Variability in Drug Response?
    Anukriti Sharma, Mary M. Buschmann, Jack A. Gilbert · 2019 · Clinical Pharmacology & Therapeutics
42. Drinking Water Source and Intake Are Associated with Distinct Gut Microbiota Signatures in US and UK Populations
    Tiphaine Vanhaecke, Oriane Bretin, Marion Poirel, Julien Tap · 2021 · Journal of Nutrition
43. Artificial intelligence and synthetic biology approaches for human gut microbiome
    Prasoon Kumar, Rajeshwari Sinha, Pratyoosh Shukla · 2020 · Critical Reviews in Food Science and Nutrition
44. The role of bread in the UK diet: An update
    S. Lockyer, Ayela Spiro · 2020 · Nutrition Bulletin
45. Challenges and opportunities in sharing microbiome data and analyses
    Curtis Huttenhower, Robert D. Finn, Alice Carolyn McHardy · 2023 · Nature Microbiology
46. Human Gut Microbiome Across Different Lifestyles: From Hunter-Gatherers to Urban Populations
    Santiago Rosas-Plaza, Alejandra Hernández‐Terán, Marcelo Navarro-Díaz, Ana Elena Escalante, Rosario Morales-Espinosa, René Cerritos · 2022 · Frontiers in Microbiology
47. MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities
    Liu Cao, Alexey A. Gurevich, Kelsey L. Alexander, C. Benjamin Naman, Tiago Leão, Evgenia Glukhov, Tal Luzzatto‐Knaan, Fernando Vargas, Robby Quinn, Amina Bouslimani et al. · 2019 · Cell Systems
48. Fluoride induced leaky gut and bloom of Erysipelatoclostridium ramosum mediate the exacerbation of obesity in high-fat-diet fed mice
    Guijie Chen, Yujia Peng, Yujie Huang, Minhao Xie, Zhuqing Dai, Huimei Cai, Wei Dong, Weiqi Xu, Zhi Xie, Dan Chen et al. · 2022 · Journal of Advanced Research
49. High-Throughput Miniaturized 16S rRNA Amplicon Library Preparation Reduces Costs while Preserving Microbiome Integrity
    Jeremiah J. Minich, Greg C. Humphrey, Rodolfo Antonio Salido Benítez, Jon G. Sanders, Austin D.-E. Swafford, Eric E. Allen, Rob D. Knight · 2018 · mSystems
50. Metagenomics and artificial intelligence in the context of human health
    Atif Khurshid Wani, Priyanka Roy, Vijay Kumar Gahlawat, Tahir ul Gani Mir · 2022 · Infection Genetics and Evolution
51. Cardiometabolic benefits of a non-industrialized-type diet are linked to gut microbiome modulation
    Fuyong Li, Anissa M. Armet, Katri Korpela, Junhong Liu, Rodrigo Margain Quevedo, Francesco Asnicar, Benjamin Seethaler, Tianna Rusnak, Janis L. Cole, Zhihong Zhang et al. · 2025 · Cell
52. Recent advances in modulating the microbiome
    Eamonn M.M. Quigley, Prianka Gajula · 2020 · F1000Research
53. The edible plant microbiome: evidence for the occurrence of fruit and vegetable bacteria in the human gut
    Wisnu Adi Wicaksono, Tomislav Cernava, Birgit Wassermann, Ahmed Abdelfattah, Maria Juliana Soto-Girón, Gerardo V. Toledo, Suvi M. Virtanen, Mikael Knip, Heikki Hyöty, Gabriele Berg · 2023 · Gut Microbes
54. Plant-Based and Ketogenic Diets As Diverging Paths to Address Cancer
    Urvi Ashok Shah, Neil M. Iyengar · 2022 · JAMA Oncology
55. Drinking Water Microbiome Project: Is it Time?
    Natalie M. Hull, Fangqiong Ling, Ameet J. Pinto, Mads Albertsen, Hongchul Jang, Pei‐Ying Hong, Konstantinos T. Konstantinidis, Mark W. LeChevallier, Rita R. Colwell, Wen‐Tso Liu · 2019 · Trends in Microbiology
56. Phylofactorization: a graph partitioning algorithm to identify phylogenetic scales of ecological data
    Alex D. Washburne, Justin D. Silverman, James T. Morton, Daniel J. Becker, Daniel E. Crowley, Sayan Mukherjee, Lawrence A. David, Raina K. Plowright · 2019 · Ecological Monographs
57. Finding intestinal fortitude: Integrating the microbiome into a holistic view of depression mechanisms, treatment, and resilience
    Michael C. Flux, Christopher A. Lowry · 2019 · Neurobiology of Disease
58. Microbial exposure and human health
    Anukriti Sharma, Jack A. Gilbert · 2018 · Current Opinion in Microbiology
59. Perspective: Striking a Balance between Planetary and Human Health—Is There a Path Forward?
    Luis Alberto Moreno, Rosan W. Meyer, Sharon Marie Donovan, Olivier Goulet, Jess Haines, Frans J. Kok, Pieter van’t Veer · 2021 · Advances in Nutrition
60. Microbiota and body weight control: Weight watchers within?
    Serena Boscaini, Sarah‐Jane Leigh, Aonghus Lavelle, Rubén García‐Cabrerizo, Timothy Lipuma, Gerard A. Clarke, Harriët Schellekens, John F. Cryan · 2021 · Molecular Metabolism
61. Gut Microbiome Modulation Via Fecal Microbiota Transplant to Augment Immunotherapy in Patients with Melanoma or Other Cancers
    McQuade, Jennifer L., Ologun, Gabriel O., Arora, Reetakshi, Wargo, Jennifer A. · 2020 · Current Oncology Reports
62. Open Humans: a platform for participant-centered research and personal data exploration
    Greshake Tzovaras, Bastian, Angrist, Misha, Arvai, Kevin, Dulaney, Mairi, Estrada-Galiñanes, Vero, Gunderson, Beau, Head, Tim, Lewis, Dana, Nov, Oded, Shaer, Orit et al. · 2019 · GigaScience
63. Evaluating Metagenomic Prediction of the Metaproteome in a 4.5-Year Study of a Patient with Crohn's Disease
    Robert H. Mills, Yoshiki Vázquez‐Baeza, Qiyun Zhu, Lingjing Jiang, James Gaffney, Greg C. Humphrey, Larry L. Smarr, Rob D. Knight, David J. Gonzalez · 2019 · mSystems
64. Maturation of Gut Microbiota and Circulating Regulatory T Cells and Development of IgE Sensitization in Early Life
    Terhi Ruohtula, Marcus Christofoor de Goffau, Janne K. Nieminen, Jarno K. Honkanen, Heli Siljander, Anu‐Maaria Hämäläinen, Aleksandr Peet, Vallo Tillmann, Jorma Ilonen, Onni J Niemelä et al. · 2019 · Frontiers in Immunology
65. Mechanisms of Food-Induced Symptom Induction and Dietary Management in Functional Dyspepsia
    Kerith Duncanson, Grace L. Burns, Jennifer Pryor, Simon Keely, Nicholas Joseph Talley · 2021 · Nutrients
66. Eukaryotic Biodiversity and Spatial Patterns in the Clarion-Clipperton Zone and Other Abyssal Regions: Insights From Sediment DNA and RNA Metabarcoding
    Franck Lejzerowicz, ANDREW JOHN GOODAY, Inès Barrenechea Angeles, Tristan Cordier, Raphaël Morard, Laure Apothéloz‐Perret‐Gentil, Lidia Lins, Lénàïck Menot, Angelika Brandt, Lisa Ann Levin et al. · 2021 · Frontiers in Marine Science
67. Gut microbiome in healthy aging versus those associated with frailty
    Mi Young Lim, Young‐Do Nam · 2023 · Gut Microbes
68. A Genomic Toolkit for the Mechanistic Dissection of Intractable Human Gut Bacteria
    Jordan E. Bisanz, Paola Soto-Perez, Cecilia A. Noecker, Alexander A. Aksenov, Kathy N. Lam, Grace E. Kenney, Elizabeth N. Bess, Henry J. Haiser, Than S. Kyaw, Feiqiao Brian Yu et al. · 2020 · Cell Host & Microbe
69. Dietary weight loss-induced improvements in metabolic function are enhanced by exercise in people with obesity and prediabetes
    Joseph W. Beals, Brandon D. Kayser, Gordon Ian Smith, George G. Schweitzer, Kyleigh Kirbach, Monica L. Kearney, Jun Yoshino, Gibraan Rahman, Rob D. Knight, Bruce W. Patterson et al. · 2023 · Nature Metabolism
70. Diet‐derived microbial metabolites in health and disease
    Henrik Munch Roager, Lars Ove Dragsted · 2019 · Nutrition Bulletin
71. Racial Differences in the Oral Microbiome: Data from Low-Income Populations of African Ancestry and European Ancestry
    Yaohua Yang, Wei Zheng, Qiuyin Cai, Martha J. Shrubsole, Zhiheng Pei, Robert M. Brucker, Mark D. Steinwandel, Seth R. Bordenstein, Zhigang Li, William J. Blot et al. · 2019 · mSystems
72. Major Depressive Disorder and gut microbiota – Association not causation. A scoping review
    Igor Łoniewski, Agata Misera, Karolina Skonieczna‐Żydecka, Mariusz Kaczmarczyk, Karolina Kaźmierczak-Siedlecka, Błażej Misiak, Wojciech M. Marlicz, Jerzy Samochowiec · 2020 · Progress in Neuro-Psychopharmacology and Biological Psychiatry
73. Conceptual strategies for characterizing interactions in microbial communities
    Sho M. Kodera, Promi Das, Jack A. Gilbert, Holly L. Lutz · 2022 · iScience
74. The potential of outdoor environments to supply beneficial butyrate-producing bacteria to humans
    Joel E. Brame, Craig Liddicoat, Catherine Anne Abbott, Martin F. Breed · 2021 · The Science of The Total Environment
75. An atlas of robust microbiome associations with phenotypic traits based on large-scale cohorts from two continents
    Daphna Rothschild, Sigal Leviatan, Ariel Hanemann, Yossi Cohen, Omer Weissbrod, Eran Segal · 2022 · PLoS ONE
76. The role of the bacterial microbiome in the treatment of cancer
    Zi‐Kun Yu, Ruiling Xie, Rui You, You‐Ping Liu, Xu-Yin Chen, Ming‐Yuan Chen, Pei-Yu Huang · 2021 · BMC Cancer
77. Role of the Microbiome in Regulating Bone Metabolism and Susceptibility to Osteoporosis
    Owen Cronin, Susan A. Lanham-New, Bernard Michael Corfe, Celia Louise Gregson, Andrea L. Darling, Kourosh R. Ahmadi, Philippa S. Gibson, Jonathan H. Tobias, Kate Anna Ward, Μαρία Τράκα et al. · 2021 · Calcified Tissue International
78. Parallel‐Meta Suite: Interactive and rapid microbiome data analysis on multiple platforms
    Yuzhu Chen, Jian Li, Yufeng Zhang, Mingqian Zhang, Zheng Sun, Gongchao Jing, Shi Wei Huang, Xiaoquan Su · 2022 · iMeta
79. Human Gut Microbiota Plasticity throughout the Life Course
    Kerstin Thriene, Karin B. Michels · 2023 · International Journal of Environmental Research and Public Health
80. Gut microbiome changes induced by a diet rich in fruits and vegetables
    Mariè van der Merwe · 2020 · International Journal of Food Sciences and Nutrition
81. The Gut Microbiome in Autism: Study-Site Effects and Longitudinal Analysis of Behavior Change
    Jennifer Fouquier, Nancy Moreno Huizar, Jody M. Donnelly, Cody M. Glickman, Dae‐Wook Kang, Juan Maldonado, Rachel A. Jones, Kimberly Ann Johnson, James B. Adams, Rosa Krajmalnik‐Brown et al. · 2021 · mSystems
82. Comparative Effect of 22 Dietary Sources of Fiber on Gut Microbiota of Healthy Humans in vitro
    Marta Calatayud, Pieter Van den Abbeele, Jonas Ghyselinck, Massimo Marzorati, Eric Rohs, Anne M. Birkett · 2021 · Frontiers in Nutrition
83. Time of sample collection is critical for the replicability of microbiome analyses
    Celeste Allaband, Amulya Lingaraju, Stephany Flores Ramos, Tanya Kumar, Haniyeh Javaheri, Maria Denalene Tiu, Ana Carolina Dantas Machado, R. Alexander Richter, Emmanuel O. Elijah, Gabriel G. Haddad et al. · 2024 · Nature Metabolism
84. Monitoring the microbiome for food safety and quality using deep shotgun sequencing
    Kristen L. Beck, Niina Haiminen, David D. Chambliss, Stefan B. Edlund, Mark Kunitomi, Bihua C. Huang, Nguyet T. Kong, Balasubramanian Ganesan, Robert C. Baker, Peter J. Markwell et al. · 2021 · npj Science of Food
85. Data Donation as a Model for Citizen Science Health Research
    Matthew J. Bietz, Kevin Patrick, Cinnamon S. Bloss · 2019 · Citizen Science Theory and Practice
86. Does geographical variation confound the relationship between host factors and the human gut microbiota: a population-based study in China
    Shan Sun, Huijun Wang, Matthew C. B. Tsilimigras, Annie Green Howard, Wei Sha, Jiguo Zhang, Chang Su, Zhihong Wang, Shufa Du, Michael Sioda et al. · 2020 · BMJ Open
87. Crowds, citizens, and science: a multi-dimensional framework and agenda for future research
    C. Franzoni, Marion K. Poetz, Henry Sauermann · 2021 · Social Science Research Network
88. Targeting the Gut Microbiota in Kidney Disease: The Future in Renal Nutrition and Metabolism
    Kelly Lambert, Emanuele Rinninella, Annabel Biruete, Keiichi Sumida, Jordan Stanford, Pauline Celine Raoul, Maria Cristina Mele, Angela Yee-Moon Wang, Denise Mafra · 2023 · Journal of Renal Nutrition
89. Interactions between Blastocystis subtype ST4 and gut microbiota in vitro
    Lei Deng, Kevin S. W. Tan · 2022 · Parasites & Vectors
90. Machine Learning Data Analysis Highlights the Role of Parasutterella and Alloprevotella in Autism Spectrum Disorders
    Daniele Pietrucci, Adelaide Teofani, Marco Milanesi, Bruno Fosso, Lorenza Putignani, Francesco Messina, Graziano Pesole, Alessandro Desideri, Giovanni Chillemi · 2022 · Biomedicines
91. Beyond the gut: Skin microbiome compositional changes are associated with BMI
    Michael Brandwein, Idan Katz, Ariel Katz, Ron Kohen · 2019 · Human Microbiome Journal
92. Settlers of our inner surface – factors shaping the gut microbiota from birth to toddlerhood
    Martin Frederik Laursen, Martin Iain Bahl, Tine Rask Licht · 2021 · FEMS Microbiology Reviews
93. Standardization of microbiome studies for urolithiasis: an international consensus agreement
    Naveen Kachroo, Dirk Lange, Kristina L. Penniston, Joshua M. Stern, Gregory E. Tasian, Petar Bajic, Alan J. Wolfe, Mangesh Vasant Suryavanshi, Andrea Ticinesi, Tiziana Meschi et al. · 2021 · Nature Reviews Urology
94. Global branches and local states of the human gut microbiome define associations with environmental and intrinsic factors
    Julien Tap, Franck Lejzerowicz, Aurélie Cotillard, Matthieu Pichaud, Daniel T. McDonald, Se Jin Song, Rob D. Knight, Patrick Veiga, Muriel Derrien · 2023 · Nature Communications
95. A new era in healthcare: The integration of artificial intelligence and microbial
    Da-Liang Huo, Xiaogang Wang · 2024 · Medicine in Novel Technology and Devices
96. G ut microbiome metagenomics in clinical practice: bridging the gap between research and precision medicine
    Henok Ayalew Tegegne, Tor Savidge · 2025 · Gut Microbes
97. We and herbivores eat endophytes
    Esperanza Martínez‐Romero, José Luis Aguirre‐Noyola, Rafael Bustamante‐Brito, Pilar González‐Román, Diana Hernández‐Oaxaca, Victor M. Higareda‐Alvear, Leslie Mariella Montes-Carreto, Julio Martínez‐Romero, Mónica Rosenblueth, Luis Eduardo Servín-Garcidueñas · 2020 · Microbial Biotechnology
98. Genetic grouping of SARS-CoV-2 coronavirus sequences using informative subtype markers for pandemic spread visualization
    Zhengqiao Zhao, Bahrad Ali Sokhansanj, Charvi Malhotra, Kitty Zheng, GAIL L. ROSEN · 2020 · PLoS Computational Biology
99. Visualizing the invisible: class excursions to ignite children’s enthusiasm for microbes
    Terry J. McGenity, Amare Gessesse, John Edward Hallsworth, Esther García‐Cela, Carol Verheecke‐Vaessen, Fengping Wang, Max Chavarría, Max M. Häggblom, Søren Molin, Antoine Danchin et al. · 2020 · Microbial Biotechnology
100. Association between Residential Greenness and Human Microbiota: Evidence from Multiple Countries
     Yidan Zhang, Shujun Fan, Zheng Zhang, Jiaxin Li, Xiao-Xuan Liu, Li-Xin Hu, Luke D. Knibbs, Payam Dadvand, Bin Badrudin Jalaludin, Matthew H. E. M. Browning et al. · 2023 · Environmental Health Perspectives