American Gut: an Open Platform for Citizen-Science Microbiome Research

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Items 601–700 of 884

1. Fibre intake and supplementation during treatment for haematological malignancies: A scoping review
   Sarah Andersen, Andrea S. Henden, Heidi Maria Staudacher, Glen Kennedy, Nicole Gavin · 2023 · Journal of Human Nutrition and Dietetics
2. Host‐Variable‐Embedding Augmented Microbiome‐Based Simultaneous Detection of Multiple Diseases by Deep Learning
   Shunyao Wu, Zhiruo Li, Yuzhu Chen, Mingqian Zhang, Yangyang Sun, Jieqi Xing, Fengyang Zhao, Shi Wei Huang, Rob D. Knight, Xiaoquan Su · 2023 · Advanced Intelligent Systems
3. Dietary Biodiversity and Diet Quality in Dutch Adults
   Rosalie E. Bakker, Vera S. Booij, Corné van Dooren, Mary Nicolaou, Ingeborg A. Brouwer, Margreet R. Olthof · 2024 · Nutrients
4. Beyond Efficiency: The Social and Ecological Costs of Plant Factories in Urban Farming—A Review
   László Csambalik, Izóra Gál, Krisztina Madaras, Andrea Tóbiás, Péter Pusztai · 2024 · Urban Science
5. The gut microbiome, health and personalised nutrition
   Federica Amati, Lucy Jane McCann, Tim D. Spector · 2022 · Trends in Urology & Men s Health
6. Effects of Prebiotic Therapy on Gastrointestinal Microbiome of Individuals with Different Inflammatory Conditions: A Systematic Review of Randomized Controlled Trials
   M. C. Ribeiro, Yara Loyanne de Almeida Silva Levi, Vittório Moraschini, Michel Reis Messora, Flávia Aparecida Chaves Furlaneto · 2023 · Probiotics and Antimicrobial Proteins
7. Relative dispersion ratios following fecal microbiota transplant elucidate principles governing microbial migration dynamics
   Yadid M. Algavi, Elhanan Borenstein · 2024 · Nature Communications
8. A new pipeline for structural characterization and classification of RNA-Seq microbiome data
   Sebastian Racedo, Iván Portnoy, Jorge Ivan Velez, Homero G. San-Juan-Vergara, Marco Enrique Sanjuan, Eduardo E. Zurek · 2021 · BioData Mining
9. The Influence of the Microbiota on Brain Structure and Function: Implications for Stress-Related Neuropsychiatric Disorders
   John D. Sterrett, Nathan D. Andersen, Christopher A. Lowry · 2022 · Progress in inflammation research
10. Fecal Microbiota Functional Gene Effects Related to Single-Dose Antibiotic Treatment of Travelers’ Diarrhea
    Ryan C Johnson, Joy D. Van Nostrand, Michele D. Tisdale, Brett E. Swierczewski, Mark P. Simons, Patrick Connor, Jamie Fraser, Angela R. Melton‐Celsa, David R. Tribble, Mark S. Riddle · 2021 · Open Forum Infectious Diseases
11. Decomposing metabolite set activity levels with PALS
    Karen McLuskey, Joe Wandy, Isabel M. Vincent, Justin J. J. van der Hooft, Simon Rogers, Karl E. Burgess, Rónán Daly · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
12. Detection of Cardiovascular Disease Using Gut Microbiota Data
    Can Duyar, Simone Oliver Senica, Habil Kalkan · 2023 · Research Square
13. Proceedings of The ACM Collective Intelligence Conference
    2023
14. Augmenting Circadian Biology Research With Data Science
    Severine Soltani, Jamison H. Burks, Benjamin L. Smarr · 2025 · Journal of Biological Rhythms
15. From variability to stability: Sensitivity of network properties in IBD human gut microbiome studies
    Theresa Geese, Astrid Dempfle · 2025 · Computational and Structural Biotechnology Journal
16. A contributory citizen science project reveals the impact of dietary keys to microbiome health in Spain
    Zaida Soler, Gerard Serrano-Gómez, Marc Pons-Tarín, Sara Vega‐Abellaneda, Zixuan Xie, Isaac Manjón, Chloe Cognard, Encarna Varela, Francisca Yáñez, Arnau Noguera-Segura et al. · 2025 · npj Biofilms and Microbiomes
17. The effects of dietary fat on gut microbial composition and function in a mouse model of ovarian cancer
    Mariam M. AlHilli, Naseer Sangwan, Alex Myers, Surabhi Tewari, Daniel J. Lindner, Gail Cresci, Ofer Reizes · 2025 · Journal of Ovarian Research
18. Evaluation of a 12-week Mediterranean diet-based nutritional and educational programme for breast cancer survivors: impact on BMI, fatigue, dietary adherence, and menopausal symptoms
    Isabel Duncan White, Joanna Cunningham, Sofia Georgopoulou, Laura Tilt, Rachel Rawson, Ella Thilaganathan, Matthew R. D. Brown · 2025 · Frontiers in Nutrition
19. Parity influences on the infant gut microbiome development: a longitudinal cohort study
    R. Prasad, A. Angelova, Poorani Subramanian, Sivaranjani Namasivayam, Qing Chen, K. Banks, Shira Levy, George Larry Maxwell, Suchitra K. Hourigan · 2025 · Gut Microbes
20. Indirect influence of global climate change, mediated by nutrition, on anxiety disorders
    Ulysses Paulino Albuquerque, Rodrigo Felipe Rodrigues do Carmo, Sávio Marcelino Gomes, Reginaldo A. F. Gusmão, Michelle Cristine Medeiros Jacob, Arthur Ramalho Magalhães, María Teresa Pulido Silva, Juliana Kelly da Silva-Maia, Nicola Schiel, Mauro Dias Silva Júnior et al. · 2025 · Discover Food
21. Bladder health and the urogenital microbiome in community-dwelling adult females
    Linda T. Brubaker, Daniel T. McDonald, S. Putnam, Caitriona Brennan, Cynthia S. Fok, Cora Elizabeth Lewis, Jerry L. Lowder, M. G. Mueller, Leslie Rickey, Elizabeth Rose Mueller et al. · 2025 · mSystems
22. CMiNet: An R package and user‐friendly Shiny App for constructing consensus microbiome networks
    Rosa Aghdam, Claudia Solís‐Lemus · 2025 · Methods in Ecology and Evolution
23. Fermented food microbiome: influence on oral and gut microbiota, and human health
    Dongyeop Kim, Hae-In Joe, Jin‐Woo Bae, Gary D. Wu, Charlene W. Compher, Hyun Koo · 2026 · Nature Reviews Microbiology
24. AGA Clinical Practice Update on Management of Clostridioides difficile Infection in Adults: Expert Review
    Monika Fischer, Byron P. Vaughn, Anne F. Peery, Colleen R. Kelly · 2026 · Clinical Gastroenterology and Hepatology
25. fastCCLasso: a fast and efficient algorithm for estimating correlation matrix from compositional data
    Shen Zhang, Huaying Fang, Tao Hu · 2024 · Bioinformatics
26. Meta2DB: curated shotgun metagenomic feature sets and metadata for health state prediction
    Car Reen Kok, Nisha Mulakken, James B. Thissen, Jose Manuel Martí, Ryan Lee, Jacob B. Trainer, Andre Goncalves, Hiranmayi Ranganathan, Aram Avila-Herrera, Crystal J. Jaing et al. · 2026 · Bioinformatics
27. Bayesian compositional generalized linear mixed models for disease prediction using microbiome data
    Li Zhang, Xinyan Zhang, Justin M. Leach, AKM Fazlur Rahman, Carrie R. Howell, Nengjun Yi · 2025 · BMC Bioinformatics
28. BMDD: A probabilistic framework for accurate imputation of zero-inflated microbiome sequencing data
    Huijuan Zhou, Jun Chen, Xianyang Zhang · 2025 · PLoS Computational Biology
29. Prioritizing neglected food species in nutritional studies using expert-knowledge and explainable AI
    Michelle Cristine Medeiros Jacob, Aline Martins de Carvalho, Angela Giovana Batista, Aníbal de Freitas Santos Júnior, Antônio Augusto Ferreira Carioca, Célia Márcia Medeiros de Morais, Cínthia Baú Betim Cazarin, Daniel Tregidgo, Danilo Vicente Batista de Oliveira, Dirce Maria Lobo Marchioni et al. · 2026 · Scientific Reports
30. Insights into microbiome research 6: The role of consortia in studying the role of microbes in health and disease
    Sergio E. Baranzini · 2019 · Multiple Sclerosis Journal
31. Precision Nutrition from the View of the Gut Microbiome
    Plamena Dikarlo, Isabel Dorst, Olga Moskalenko, Murad Yateem · 2022 · Springer eBooks
32. Dysfunction of the Gut Microbiome and its Onset Progression of Chronic and Mental Health Disorders
    Ayesha Ameen, Anam Amir, Muhammad Nauman Aziz, Asma Irshad, Maryam Maryam, Shehr Hayat · 2023 · Pakistan Journal of Medical and Health Sciences
33. Differential network connectivity analysis for microbiome data adjusted for clinical covariates using jackknife pseudo-values
    Seungjun Ahn, Somnath Datta · 2024 · BMC Bioinformatics
34. Validation of a Food Frequency Questionnaire: VioScreen-Allergy
    Kaci Pickett‐Nairne, Deborah H. Glueck, Jessica Lee Thomson, Rick Weiss, Kelly N. Z. Fuller, Stefka Fabbri, Claudia Schaefer, Courtney Evans, Emily Bowhay, Monica Martinez et al. · 2024 · Nutrients
35. Diversity of Plant-Based Food Consumption: A Systematic Scoping Review on Measurement Tools and Associated Health Outcomes
    A. Creedon, V. Hubbard, R. Gibson, E. Dimidi · 2025 · Nutrition reviews
36. kLDM: Inferring Multiple Metagenomic Association Networks Based on the Variation of Environmental Factors
    Yuqing Yang, Xin Wang, Ken Xie, Congmin Zhu, Ning Chen, Ting Chen · 2021 · Genomics Proteomics & Bioinformatics
37. Pet-Human Gut Microbiome Host Classifier Using Data from Different Studies
    Nadia Bykova, Nikita Litovka, Anna Popenko, Sergey V. Musienko · 2020 · Microorganisms
38. CRISPR-Cas Systems in Gut Microbiome of Children with Autism Spectrum Disorders
    Natalia V. Zakharevich, Mikhail S. Nikitin, Alexey S. Kovtun, Vsevolod O. Malov, Olga V. Averina, В. Н. Даниленко, Irena I. Artamonova · 2022 · Life
39. The Population-based Microbiome Research Core: a longitudinal infrastructure for assessment of household microbiome and human health research
    Amy A Schultz, Kristen M. C. Malecki, Elizabeth A. Holzhausen, Pravleen Bajwa, Paul E. Peppard, Tamara J. LeCaire, Shoshannah I Eggers, Nasia Safdar, Ajay K. Sethi · 2021 · medRxiv
40. Can data-driven approaches for dietary pattern assessment improve microbiome epidemiology research?
    Abigail J. Johnson, Noel Theodore Mueller · 2021 · American Journal of Clinical Nutrition
41. Predicting neurodegenerative disease using pre-pathology gut microbiota composition: a longitudinal study in mice modeling Alzheimer’s disease pathologies
    Emily M. Borsom, Kathryn A Conn, Christopher R. Keefe, Chloe Herman, Gabrielle M Orsini, Allyson H. Hirsch, Melanie Palma Avila, George Testo, Sierra A. Jaramillo, Evan K Bolyen et al. · 2022 · Research Square
42. Ecological medicine
    Jack A. Gilbert · 2018 · Environmental Microbiology
43. Fecal Metabolome: New Addition to the Toolbox for Dietary Assessment?
    Cara Lea Frankenfeld · 2022 · Journal of Nutrition
44. Lower gut dysbiosis and mortality in acute critical illness: a systematic review and meta-analysis
    Tess Evans, Umar Ali, Ryan S. Anderton, Edward Raby, Laurens A. Manning, Edward Litton · 2022 · Research Square
45. Time of Sample Collection Critical for Microbiome Replicability
    Celeste Allaband, Amulya Lingaraju, Stephany Flores Ramos, Tanya Kumar, Haniyeh Javaheri, Maria Denalene Tiu, Ana Carolina Dantas Machado, R. Alexander Richter, Emmanuel O. Elijah, Gabriel G. Haddad et al. · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
46. MetaIBS - large-scale amplicon-based meta analysis of irritable bowel syndrome
    Salomé Carcy, Johannes Ostner, Viet Tran, Michael P. Menden, Christian L. Müller · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
47. Empirically establishing drug exposure records directly from untargeted metabolomics data
    Haoqi Nina Zhao, Kine Eide Kvitne, Corinna Brungs, Siddharth Mohan, Vincent Charron‐Lamoureux, Wout Bittremieux, Runbang Tang, Robin Schmid, Santosh Lamichhane, Yasin El Abiead et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
48. Comparing Published Gut Microbiome Taxonomic Data Across Multinational Studies
    Brianna K. Meeks, Katherine A. Maki, Nancy J. Ames, Jennifer J. Barb · 2021 · Nursing Research
49. Changing Gastrointestinal Transit Time Alters Microbiome Composition and Bile Acid Metabolism: A Cross‐Over Study in Healthy Volunteers
    Evette B. M. Hillman, Maximilian Baumgartner, Danielle Carson, Gregory C. A. Amos, Imad Wazir, Haider Ali Khan, Malik A. A. Khan, Sjoerd G. T. Rijpkema, Julian R.F. Walters, Elizabeth M. H. Wellington et al. · 2025 · Neurogastroenterology & Motility
50. Precision medicine in Morocco: State of art and challenges for implementation
    Meriem Khyatti, Fouzia Radouani, Ichrak Benamri, Amina Gihbid, Hicham Charoute, Adil El Hamouchi, Imane Chaoui, Abdellatif Benider, Nadia Benchakroun, Hicham El Attar et al. · 2025 · Journal of Cancer Policy
51. Exploring the relationship between co-abundance of gut microbiota and novel metabolic pathways in different subtypes of irritable bowel syndrome: insights from the American Gut Project
    Lili Han, Chunfeng Mei, Hong Xue · 2025 · Frontiers in Medicine
52. Estudio del microbioma intestinal humano mediante metagenómica: avances recientes y desafíos para su implementación clínica
    Cristina Jiménez-Arroyo, Natalia Molinero, Rosa del Campo, Susana Delgado, María Victoria Moreno-Arribas · 2025 · Enfermedades Infecciosas y Microbiología Clínica
53. From the Laboratory to the Plate: How Gut Microbiome Science Is Reshaping Our Diet
    Anne N. Hiol, Patrick Veiga · 2025 · Journal of Nutrition
54. KADAIF: an anomaly detection method for complex microbiome data
    Omri Peleg, Maya Raytan, Elhanan Borenstein · 2025 · Bioinformatics
55. Streamlined extraction of nucleic acids and metabolites from low- and high-biomass samples using isopropanol and matrix tubes
    Caitriona Brennan, Justin P. Shaffer, Pedro Belda‐Ferre, Ipsita Mohanty, Yuhan Weng, Kalen Cantrell, Gail L. Ackermann, Celeste Allaband, MacKenzie Bryant, Sawyer Farmer et al. · 2025 · Microbiology Spectrum
56. SHAP-based binarization enhances metataxonomic machine learning with application to gut microbiota of inflammatory bowel disease
    Youngro Lee, Jong-Mo Seo, Barbara Di Camillo · 2025 · Scientific Reports
57. Sonmat, a citizen-science enabled Kimjang kimchi case study on associations between hand and kimchi microbiota
    Wannes Van Beeck, Tom Eilers, Wenke Smets, Lize Delanghe, Dieter Vandenheuvel, Ines Tuyaerts, Joke Van Malderen, Sarah Ahannach, Koen Michiels, Caroline E. M. K. Dricot et al. · 2025 · Microbiology Spectrum
58. Effects of Mixed Fruits and Berries on Ameliorating Gut Microbiota and Hepatic Alterations Induced by Cafeteria Diet
    Rawan Al Hazaimeh, Louis A. Shackelford, Judith A. Boateng · 2026 · Nutrients
59. Consensus guidelines for patient and carer education on neutropenic fever
    Sophie Jessop, Emily L. Harding, Sophie Beaumont, Joanne Hickman, Trish Joyce, Lynette Chui Yen Chee, Shevon S. Fernando, Nan Vasilunas, Stephen James Luen, Peter Boan et al. · 2025 · Internal Medicine Journal
60. GutMIND: A multi-cohort machine learning framework for integrative characteristics of the microbiota-gut-brain axis in neuropsychiatric disorders
    Yanmei Ju, Shutian Lin, Shaohua Hu, Xin Jin, Liang Xiao, Tao Zhang, Yudan Zhang, Liping Zhang, X. Ma, Feng Zhu et al. · 2026 · Gut Microbes
61. From Molecules to Metabolomes, Understanding Symbiosis through Small Molecules
    Cristina Bez, Yasin El Abiead, Andrés Mauricio Caraballo‐Rodríguez · 2026 · Journal of Natural Products
62. Decoding the reproductive microbiome: enabling clinical and biological insights through machine and deep learning
    Ignacio Garach Vélez, Irene Leonés-Baños, Bárbara A. Folch, Laura Antequera, Ignacio Rojas, Francisco Manuel Ortuño, María José Sáez‐Lara, Signe Altmäe, Luis Javier Herrera · 2026 · Frontiers in Endocrinology
63. The microbiome and health
    Joseph F. Pierre, Vanessa Leone · 2020 · Elsevier eBooks
64. Description of the fecal microbiota of siblings from Costa Rica with and without affective and psychotic disorders
    Sophie Marin, Ching Jian, Alejandro Ávila-Aguirre, Henriette Raventós, Anne Salonen · 2021 · Journal of Affective Disorders Reports
65. Microbiome Analysis Using 16S Amplicon Sequencing: From Samples to ASVs
    Amnon Amir · 2021 · Methods in molecular biology
66. Networks for Compositional Data
    Jing Ma, Kun Yue, Ali Shojaie · 2021 · Frontiers in probability and the statistical sciences
67. The Microbiome, Metabolism, and Networks in Precision Nutrition
    Mensah, Gertrude Ecklu, Maseng, Maria Gjerstad, Allard, Sarah, Gilbert, Jack A · 2024 · Precision Nutrition
68. Anxiety and depression during the COVID-19 pandemic: role of the gut–brain axis
    Payam Gonbari Milani, Sima Vadaei, Armaghan Nazari, Farimah Rezaie, Roya Abedi Soleimani, Aziz Homayouni Rad · 2023 · Gastrointestinal Nursing
69. MK-BMC: a Multi-Kernel framework with Boosted distance metrics for Microbiome data for Classification
    Huang Xu, Tian Wang, Yuqi Miao, Min Qian, Yaning Yang, Shuang Wang · 2024 · Bioinformatics
70. Probiotics – when and for whom in the oncological patient population
    Igor Łoniewski, Karolina Kaźmierczak-Siedlecka, Natalia Komorniak, Ewa Stachowska · 2024 · Nowotwory Journal of Oncology
71. Diet-microbiome covariation across three giraffe species in a close-contact zone
    Elin Videvall, Brian A. Gill, Michael Butler Brown, Hannah K. Hoff, Bethan L. Littleford‐Colquhoun, Peter Lokeny, Paul M. Musili, Tyler R. Kartzinel · 2025 · Global Ecology and Conservation
72. eNODAL: an experimentally guided nutriomics data clustering method to unravel complex drug–diet interactions
    Xiangnan Xu, Alistair McNair Senior, David George Le Couteur, Victoria Carroll Cogger, David Raubenheimer, David Ernest James, Benjamin L. Parker, Stephen James Simpson, Samuel Müller, Jean Yee Hwa Yang · 2024 · Briefings in Bioinformatics
73. Using gut microbiome metagenomic hypervariable features for diabetes screening and typing through supervised machine learning
    Xavier Chavarría, Hyun Seo Park, Singeun Oh, Dongjun Kang, Jun Ho Choi, Myung-Jun Kim, Yoon Hee Cho, Myung‐hee Yi, Ju Yeong Kim · 2025 · Microbial Genomics
74. Quantifying uncertainty in microbiome-based prediction using Gaussian processes with microbial community dissimilarities
    Asahi Adachi, Fan Zhang, Shigehiko Kanaya, Naoaki Ono · 2024 · Bioinformatics Advances
75. One with Nature, One with Each Other? A Niche Construction Framework Linking Rituals, Social Media and Nature Connectedness
    Ronald D. Fischer, Johannes Alfons Karl, A. Daly, Giovanna Novaes Bortolini · 2025 · Topoi
76. Opportunities for microbiology citizen science: lessons learnt from three pilot projects
    Rachel Mary Pateman, Joyce Bennett, Anthony Craig Hilton, Isabella Romeo-Melody, Anton Rosenfeld, Sarah J Routledge, C. Rymer, Benjamin M. C. Swift, Lucy Way, Louise Whatford et al. · 2025 · Access Microbiology
77. Optimizing mouse metatranscriptome profiling by selective removal of redundant nucleic acid sequences
    Morgan Roos, Samuel Bunga, Asako Tan, Erica S. Maissy, Dylan Skola, Alexander Richter, Daniel S. Whittaker, Paula Desplats, Amir Zarrinpar, Rick Conrad et al. · 2025 · mSystems
78. metaGEENOME: an integrated framework for differential abundance analysis of microbiome data in cross-sectional and longitudinal studies
    Ahmed Abdelkader, Nur A. Ferdous, Mohamed S. El-Hadidi, Tomasz Burzykowski, Mohamed Mysara · 2025 · BMC Bioinformatics
79. From novices to co-pilots
    Vineet Pandey, Krzysztof Z. Gajos, Anoopum S. Gupta · 2020 · International Conference on ICT for Sustainability (ICT4S)
80. Participatory Microbiome Research With Hmong and Karen Communities: Lessons Learned
    Pajau Vangay, Nancy Yang, Shannon L. Pergament, Mary Xiong, Bwei Paw, Rodolfo Batres, Dan Knights, Kathleen A. Culhane‐Pera · 2021 · Journal of Participatory Research Methods
81. Bioinformatics advances in Costa Rica: retrospective view and perspectives
    Rebeca Campos-Sánchez, Andrés Flores-Cruz, José Arturo Molina-Mora, Rodrigo Antonio Mora-Rodríguez, César Rodríguez, Andrés Gatica-Arias, Caterina Guzmán‐Verri · 2021 · Revista de Biología Tropical
82. Associations between Drinking Water Source and Gut Microbiota Composition in the American Gut Project Database
    Tiphaine Vanhaecke · 2021 · Annals of Nutrition and Metabolism
83. Reconstructing the landscape of gut microbial species across 29,000 diverse individuals
    Igor Šegota, Jeramie D. Watrous, Edward D. Kantz, Shriram Nallamshetty, Saumya Tiwari, Susan C. Cheng, Mohit Jain, Tao Long · 2023 · Nucleic Acids Research
84. Human Microbiomes and Disease for the Biomedical Data Scientist
    Jonathan L. Golob · 2023 · Annual Review of Biomedical Data Science
85. A Pipeline for Constructing Reference Genomes for Large Cohort-Specific Metagenome Compression
    L. Wang, Renpeng Ding, Shixu He, Qinyu Wang, Yan Zhou · 2023 · Microorganisms
86. SOHPIE: statistical approach via pseudo-value information and estimation for differential network analysis of microbiome data
    Seungjun Ahn, Somnath Datta · 2023 · Bioinformatics
87. Introducing Molecular Hypernetworks for Discovery in Multidimensional Metabolomics Data
    Sean Colby, Madelyn R. Shapiro, Andy Lin, Aivett Bilbao Pena, Corey D. Broeckling, Emilie Purvine, Cliff Joslyn · 2024 · Journal of Proteome Research
88. Neighborhoods to Nucleotides—Advances and Gaps for an Obesity Disparities Systems Epidemiology Model
    Marta Maja Jankowska, Kyle J. Gaulton, Rob D. Knight, Kevin Patrick, Dorothy D. Sears · 2019 · Current Epidemiology Reports
89. Crowdsourced study of children with autism and their typically developing siblings identifies differences in taxonomic and predicted function for stool-associated microbes using exact sequence variant analysis
    Maude M. David, Christine A. Tataru, Jena Daniels, Jessey Nicole Schwartz, Jessica Keating, Jarrad Hampton‐Marcell, Neil Gottel, Jack A. Gilbert, Dennis Paul Wall · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
90. Revisiting microbe-metabolite interactions: doing better than random
    James T. Morton, Daniel T. McDonald, Alexander A. Aksenov, Louis-Félix Nothias-Scaglia, James R. Foulds, Robert A. Quinn, Michelle H. Badri, Tami L. Swenson, Marc W. Van Goethem, Trent R. Northen et al. · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
91. Absence of enterotypes in the human gut microbiomes reanalyzed with non-linear dimensionality reduction methods
    Ivan Bulygin, Vladislav M. Shatov, Anton Rykachevsky, Arseny Rayko, Alexander Bernstein, Evgeny Vladimirovich Burnaev, Mikhail Sergeevich Gelfand · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
92. Fluoride Exposure Induced Bloom of Erysipelatoclostridium Ramosum Mediates the Exacerbation of Obesity in High-fat-diet Fed Mice
    Guijie Chen, Yujia Peng, Yujie Huang, Minhao Xie, Zhuqing Dai, Huimei Cai, Wei Dong, Weiqi Xu, Zhi Xie, Dan Chen et al. · 2022 · Research Square
93. Metagenomics and Machine Learning-Based Precision Medicine Approaches for Autoimmune Diseases
    Itrat Zehrh, Umme Habiba, Matilde Rosalia Picco, Sidra Hafiza Basheer, Umer Abdul Rehman, Owaisa Haider, Shahzaib Khoso · 2023 · Preprints.org
94. Deep learning and host variable embedding augment microbiome-based simultaneous detection of multiple diseases
    Shunyao Wu, Zhiruo Li, Yuzhu Chen, Mingqian Zhang, Yangyang Sun, Jieqi Xing, Fengyang Zhao, Shi Wei Huang, Rob D. Knight, Xiaoquan Su · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
95. MetaCompass: Reference-guided Assembly of Metagenomes
    Tu Luan, Cepeda, Victoria, Bo Liu, Zac Bowen, Ujjwal Ayyangar, Mathieu Almeida, Hill, Christopher M., Sergey Koren, Todd J. Treangen, Adam Porter et al. · 2024 · PubMed
96. Metaproteomics and DNA metabarcoding as tools to assess dietary intake in humans
    Brianna L. Petrone, Alexandria Bartlett, Sharon Jiang, Abigail Korenek, Simina Vintila, Christine B. Tenekjian, William S. Yancy, Lawrence A. David, Manuel Kleiner · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
97. Player-Guided AI outperforms standard AI in Sequence Alignment Puzzles
    Mutalova, Renata, Sarrazin-Gendron, Roman, Ghasemloo Gheidari, Parham, Cai, Eddie, Richard, Gabriel, Caisse, Sebastien, Knight, Rob, Blanchette, Mathieu, Szantner, Attila, Waldispühl, Jérôme · 2023 · Proceedings of The ACM Collective Intelligence Conference
98. Detection of Sparse and Weak Effects in High-Dimensional Feature Space, with an Application to Microbiome Data Analysis
    Tatjana Pavlenko, Annika Tillander, Justine W. Debelius, Fredrik Boulund · 2020 · Springer eBooks
99. Enhancing Type 1 Diabetes Care by Embracing an Integrative Approach
    Laura Neville · 2023 · Integrative and Complementary Therapies
100. Consumption of a variety of plant foods, ultra-processed foods, and risk for chronic disease: A dietary intervention
     Anaya Mitra, Kathy Thames, Anna Bess Brown, Isabelle Shuster, Molly Rosenfield, Megan Baumler · 2024 · Human Nutrition & Metabolism