Highly multiplexed in situ protein imaging with signal amplification by Immuno-SABER

Deep Residual Learning for Image Recognition

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U-Net: Convolutional Networks for Biomedical Image Segmentation

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Fiji: an open-source platform for biological-image analysis

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Tissue-based map of the human proteome

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CellProfiler: image analysis software for identifying and quantifying cell phenotypes

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Simultaneous epitope and transcriptome measurement in single cells

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Spatially resolved, highly multiplexed RNA profiling in single cells

Chen, K. H., Boettiger, A. N., Moffitt, J. R., Wang, S., & Zhuang, X. (2015) · Science · doi:10.1126/science.aaa6090 · Cited by 2,969

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The human cell atlas

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Localized Imaging of Programmed Death-Ligand 1 on Individual Tumor-Derived Extracellular Vesicles for Prediction of Immunotherapy Response

Zhang, J., Guan, M., Lv, M., Liu, Y., Zhang, H., Zhang, Z., & Zhang, K. (2023) · ACS Nano · doi:10.1021/acsnano.3c05799 · Cited by 16

Highly sensitive SERS platform for pathogen analysis by cyclic DNA nanostructure@AuNP tags and cascade primer exchange reaction

Xiao, Y., Luo, S., Qiu, J., Zhang, Y., Liu, W., Zhao, Y., Zhu, Y., Deng, Y., Lu, M., Liu, S., et al. (2024) · Journal of Nanobiotechnology · doi:10.1186/s12951-024-02339-1 · Cited by 16

Multiplexed In Situ Imaging of Site-Specific m6A Methylation with Proximity Hybridization Followed by Primer Exchange Amplification (m6A-PHPEA)

Song, M., Wang, J., Hou, J., Fu, T., Feng, Y., Lv, W., Ge, F., Peng, R., Han, D., & Tan, W. (2024) · ACS Nano · doi:10.1021/acsnano.4c08407 · Cited by 16

A magnetic separation-assisted auto-cyclic primer extension for OSCC-associated salivary miRNA detection

Li, H., Zhang, W., Chang, R., Lan, Y., Qiu, D., Wang, K., Huang, J. L., & Xu, Q. H. (2024) · Biosensors and Bioelectronics · doi:10.1016/j.bios.2024.116936 · Cited by 16

A simple and rapid method to assay SARS-CoV-2 RNA based on a primer exchange reaction

Li, D., Duan, C., Cheng, W., Gong, Y., Yao, Y., Wang, X., Wang, Z., & Xiang, Y. (2022) · Chemical Communications · doi:10.1039/d2cc00488g · Cited by 16

Spatially Resolved and Highly Multiplexed Protein and RNA In Situ Detection by Combining CODEX With RNAscope In Situ Hybridization

Cheng, Y., Burrack, R., & Li, Q. (2022) · Journal of Histochemistry & Cytochemistry · doi:10.1369/00221554221114174 · Cited by 16

Polymerase-Driven Logic Signal Amplification for the Detection of Small Extracellular Vesicle Surface Proteins and the Identification of Breast Cancer

Hu, X., Cheng, S., Luo, X., Xian, Y., & Zhang, C. (2023) · Analytical Chemistry · doi:10.1021/acs.analchem.3c01080 · Cited by 16

Locked Nucleic Acid-Enhanced Entropy-Driven Amplifier Combined with Catalytic Hybridization Reaction-Based DNA Circuit for Dual Amplified Detection of Single Nucleotide Polymorphisms and Asymmetric Encryption of Gene Information

Li, Y., Gao, Z. F., Du, Y., Han, Y., Ren, X. Z., Wu, D., Ma, H., Ju, H., Xia, F., Wei, Q. L., et al. (2025) · Analytical Chemistry · doi:10.1021/acs.analchem.5c00529 · Cited by 15

Computer-Aided Design of DNA Self-Limited Assembly for Relative Quantification of Membrane Proteins

Mao, D., Lu, C., Zhang, R., Zhu, L., Song, Y., Feng, C., Zhang, Q., Chen, T., Yang, Y. P., Chen, G., et al. (2022) · Analytical Chemistry · doi:10.1021/acs.analchem.2c01909 · Cited by 15

Delineating spatial cell-cell interactions in the solid tumour microenvironment through the lens of highly multiplexed imaging

Cohn, D. E., Forder, A., Marshall, E. A., Vucic, E. A., Stewart, G. L., Noureddine, K., Lockwood, W. W., MacAulay, C. E., Guillaud, M. D., & Lam, W. L. (2023) · Frontiers in Immunology · doi:10.3389/fimmu.2023.1275890 · Cited by 17

Codetection of Proteins and RNAs on Extracellular Vesicles for Pancreatic Cancer Early Diagnosis

He, J., Long, J., Zhai, C., Xu, J., Bao, K., Su, W., Jiang, L., Shen, G., & Ding, X. (2024) · Analytical Chemistry · doi:10.1021/acs.analchem.3c05858 · Cited by 15

Cyclic microchip assay for measurement of hundreds of functional proteins in single neurons

Yang, L., Ball, A., Liu, J. J., Jain, T., Li, Y., Akhter, F., Zhu, D., & Wang, J. (2022) · Nature Communications · doi:10.1038/s41467-022-31336-x · Cited by 14

A highly sensitive and versatile fluorescent biosensor for pathogen nucleic acid detection based on toehold-mediated strand displacement initiated primer exchange reaction

Zhang, Y., Li, Z., Su, W., Zhong, G., Zhang, X., Wu, Y. J., Situ, B., Xiao, Y., Yan, X., & Zheng, L. (2022) · Analytica Chimica Acta · doi:10.1016/j.aca.2022.340125 · Cited by 15

DNA Nanotechnology‐Empowered Live Cell Measurements

Liu, J., Li, M., & Zuo, X. (2022) · Small · doi:10.1002/smll.202204711 · Cited by 15

Online narrative guides for illuminating tissue atlas data and digital pathology imagesPreprint

Rashid, R., Chen, Y.-A., Hoffer, J., Muhlich, J. L., Lin, J., Krueger, R., Pfister, H., Mitchell, R. N., Santagata, S., & Sorger, P. K. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.03.27.001834 · Cited by 15

Scalable design of orthogonal DNA barcode libraries

Gowri, G., Sheng, K., & Yin, P. (2024) · Nature Computational Science · doi:10.1038/s43588-024-00646-z · Cited by 14

High-dimensional imaging using combinatorial channel multiplexing and deep learning

Ben-Uri, R., Shabat, L. B., Shainshein, D., Bar-Tal, O., Bussi, Y., Maimon, N., Haran, T. K., Milo, I., Goliand, I., Addadi, Y., et al. (2025) · Nature Biotechnology · doi:10.1038/s41587-025-02585-0 · Cited by 20

Multiparameter single-cell proteomic technologies give new insights into the biology of ovarian tumors

Funingana, I.-G., Bedia, J. S., Huang, Y.-W., Delgado‐González, A., Donoso, K., Gonzalez, V. D., Brenton, J. D., Ashworth, A., & Fantl, W. J. (2023) · Seminars in Immunopathology · doi:10.1007/s00281-022-00979-9 · Cited by 14

Recent advances in the synthesis of single‐stranded DNA in vitro

Li, S., Tan, W., Jia, X., Miao, Q., Liu, Y., & Yang, D. (2024) · Biotechnology Journal · doi:10.1002/biot.202400026 · Cited by 14

Highly sensitive detection platform-based diagnosis of oesophageal squamous cell carcinoma in China: a multicentre, case–control, diagnostic study

Wang, Y., Xing, S., Xu, Y., Xu, Q., Ji, M., Peng, Y., Wu, Y., Wu, M., Xue, N., Zhang, B., et al. (2024) · The Lancet Digital Health · doi:10.1016/s2589-7500(24)00153-5 · Cited by 15

Ultrasensitive detection of cancer-associated nucleic acids and mutations by primer exchange reaction-based signal amplification and flow cytometry

Kocabey, S., Cattin, S., Gray, I., & Rüegg, C. (2024) · Biosensors and Bioelectronics · doi:10.1016/j.bios.2024.116839 · Cited by 14

CRISPR/Cas13a‐Enhanced Porous Hydrogel Encapsulated Photonic Barcodes for Multiplexed Detection of Virus

Zhang, D., Zhou, Y., Li, X., & Luan, Q. (2025) · Small · doi:10.1002/smll.202408725 · Cited by 14

Multiplexed detection of tumor biomarkers utilizing immunohybridization Chain reaction integrated photonic barcodes

Zhang, D., Cai, L., Bian, F., Tan, H. F., & Zhao, Y. (2020) · Sensors and Actuators B Chemical · doi:10.1016/j.snb.2020.128535 · Cited by 14

Single-cell analyses uncover granularity of muscle stem cells

Saber, J., Lin, A. Y., & Rudnicki, M. A. (2020) · F1000Research · doi:10.12688/f1000research.20856.1 · Cited by 13

Expanding the Scope of Antibody Rebridging with New Pyridazinedione–TCO Constructs

Marquard, A. N., Carlson, J., & Weissleder, R. (2020) · Bioconjugate Chemistry · doi:10.1021/acs.bioconjchem.0c00155 · Cited by 14

Single‐Cell and Spatial Omics: Methods and Applications

Cen, X., Huang, X., Deng, E., Gong, X., Tan, N., Ye, J. T., Wang, Y., Eils, R., Luo, Q., Li, Y., et al. (2026) · MedComm · doi:10.1002/mco2.70713 · Cited by 14

Chemical Biology Approaches toward Precise Structure Control of IgG‐Based Antibody‐Oligonucleotide Conjugates

Shen, L., Wu, Y., Xie, W., Chen, G., & Xing, H. (2023) · ChemBioChem · doi:10.1002/cbic.202300077 · Cited by 13

Moving beyond DNA: towards functional analysis of the vaginal microbiome by non-sequencing-based methods

Correia, G. D. S., Marchesi, J. R., & MacIntyre, D. A. (2023) · Current Opinion in Microbiology · doi:10.1016/j.mib.2023.102292 · Cited by 13

The broken Alzheimer’s disease genome

Roque, C. G., Phatnani, H. P., & Hengst, U. (2024) · Cell Genomics · doi:10.1016/j.xgen.2024.100555 · Cited by 13

Precise immunofluorescence canceling for highly multiplexed imaging to capture specific cell states

Tomimatsu, K., Fujii, T., Bise, R., Hosoda, K., Taniguchi, Y., Ochiai, H., Ohishi, H., Ando, K., Minami, R., Tanaka, K. Y., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-47989-9 · Cited by 14

Programming Fast DNA Amplifier Circuits with Versatile Toehold Exchange Pathway

Mo, F., Li, C., Sun, J., Lin, X., Yu, S., Wang, F., Liu, X., & Li, J. (2024) · Small · doi:10.1002/smll.202402914 · Cited by 13

Single‐cell and spatial omics unravel the spatiotemporal biology of tumour border invasion and haematogenous metastasis

Cheng, X., Cao, Y., Liu, X., Li, Y., Li, Q., Gao, D., & Yu, Q. (2024) · Clinical and Translational Medicine · doi:10.1002/ctm2.70036 · Cited by 13

Ultra‐fast Cycling for Multiplexed Cellular Fluorescence Imaging

Ko, J., Oh, J., Ahmed, M. S., Carlson, J., & Weissleder, R. (2020) · Angewandte Chemie · doi:10.1002/ange.201915153 · Cited by 13

Fluorochromized tyramide-glucose oxidase as a multiplex fluorescent tyramide signal amplification system for histochemical analysis

Yamauchi, K., Okamoto, S., Ishida, Y., Konno, K., Hoshino, K., Furuta, T., Takahashi, M., Koike, M., Isa, K., Watanabe, M., et al. (2022) · Scientific Reports · doi:10.1038/s41598-022-19085-9 · Cited by 13

Catalytic DNA Polymerization Can Be Expedited by Active Product Release**

Moerman, P. G., Gavrilov, M. M., Ha, T., & Schulman, R. (2022) · Angewandte Chemie International Edition · doi:10.1002/anie.202114581 · Cited by 13

Highly Multiplexed 3D Profiling of Cell States and Immune Niches in Human TumoursPreprint

Yapp, C., Nirmal, A. J., Zhou, F., Wong, A. Y. H., Tefft, J. B., Lu, Y. D., Shang, Z., Maliga, Z., Llopis, P. D. L. M. M., Murphy, G. F., et al. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.11.10.566670 · Cited by 13

Spatial analysis identifies DC niches as predictors of pembrolizumab therapy in head and neck squamous cell cancer

Oh, J., Hoelzl, J., Carlson, J. C. T., Bill, R., Peterson, H. M., Faquin, W., Pittet, M., Pai, S. I., & Weissleder, R. (2025) · Cell Reports Medicine · doi:10.1016/j.xcrm.2025.102100 · Cited by 14

An open source toolkit for repurposing Illumina sequencing systems as versatile fluidics and imaging platforms

Pandit, K., Petrescu, J., Cuevas, M., Stephenson, W., Smibert, P., Phatnani, H. P., & Maniatis, S. (2022) · Scientific Reports · doi:10.1038/s41598-022-08740-w · Cited by 13

Advancing Stem Cell Research through Multimodal Single-Cell AnalysisPreprint

Kuciński, I., & Göttgens, B. (2020) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a035725 · Cited by 12

Explainable multi-view framework for dissecting intercellular signaling from highly multiplexed spatial dataPreprint

Tanevski, J., Gábor, A., Flores, R. O. R., Schapiro, D., & Sáez-Rodríguez, J. (2021) · Research Square · doi:10.21203/rs.3.rs-735362/v1 · Cited by 12

Viv: Multiscale Visualization of High-Resolution Multiplexed Bioimaging Data on the WebPreprint

Manz, T., Gold, I., Patterson, N. H., McCallum, C., Keller, M. S., Herr, B. W., Börner, K., Spraggins, J. M., & Gehlenborg, N. (2020) · doi:10.31219/osf.io/wd2gu · Cited by 12

Ultrasensitive and Multiplexed Protein Imaging with Cleavable Fluorescent Tyramide and Antibody Stripping

Pham, T. H., Nazaroff, C. D., LaBaer, J., & Guo, J. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms22168644 · Cited by 11

Ultrasensitive and Multiplexed Protein Imaging with Clickable and Cleavable Fluorophores

Pham, T. H., Chen, Y., LaBaer, J., & Guo, J. (2024) · Analytical Chemistry · doi:10.1021/acs.analchem.4c01273 · Cited by 11

Highly multiplexed fluorescence microscopy with spectrally tunable semiconducting polymer dots

Guo, Z., Poudel, C., Sarfatis, M. C., Yu, J., Wong, M., Chiu, D. T., & Vaughan, J. C. (2024) · Science Advances · doi:10.1126/sciadv.adk8829 · Cited by 11

Multiplexed In Situ Protein Profiling with High-Performance Cleavable Fluorescent Tyramide

Pham, T. H., Liao, R., LaBaer, J., & Guo, J. (2021) · Molecules · doi:10.3390/molecules26082206 · Cited by 11

Protein–DNA Conjugates with a Discrete Number of Oligonucleotide Strands for Highly Reproducible Protein Quantification by the DNA Proximity Assay

Ang, Y. S., & Yung, L. L. (2023) · Analytical Chemistry · doi:10.1021/acs.analchem.3c02033 · Cited by 11

Mosaic-PICASSO: accurate crosstalk removal for multiplex fluorescence imaging

Cang, H., Liu, Y., & Xing, J. (2023) · Bioinformatics · doi:10.1093/bioinformatics/btad784 · Cited by 11

Assembly of Nanocatalyst As a Noninvasive Tool for Breast Cancer Diagnosis and Immunotherapy Surveillance Designed by Visually Tracking Tumor-Derived Exosomal PD-L1

Shi, H., Zeng, T., Liu, Y., Liang, Q., Yang, F., Liang, Y., Fu, Z., Li, W., Li, G., & Yin, Y. (2022) · ACS Materials Letters · doi:10.1021/acsmaterialslett.2c01036 · Cited by 10

Ultra high content analyses of circulating and tumor associated hybrid cells reveal phenotypic heterogeneity

Whalen, R. M., Anderson, A. N., Jones, J. A., Sims, Z., Chang, Y. H., Nederlof, M. A., Wong, M. H., & Gibbs, S. L. (2024) · Scientific Reports · doi:10.1038/s41598-024-57381-8 · Cited by 10

Constructions, Purifications and Applications of DNA-Antibody Conjugates: A Review

Wang, T., Wang, X., Luo, S., Zhang, P., Li, N., Chen, C., Li, J., Shi, H. S., Dong, H., & Huang, R.-P. (2024) · ACS Omega · doi:10.1021/acsomega.4c07714 · Cited by 10

The spatial biology of HIV infection

Hu, K., O’Neil, T. R., Baharlou, H., Austin, P. J., Karrasch, J. F., Sarkawt, L., Li, Y., Bertram, K. M., Cunningham, A. L., Patrick, E., et al. (2025) · PLoS Pathogens · doi:10.1371/journal.ppat.1012888 · Cited by 12

Microbiome in cancer metastasis: biological insights and emerging spatial omics methods

Meyers, M., Stoffels, C., Frache, G., Letellier, E., & Feucherolles, M. (2025) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2025.1559870 · Cited by 10

Ultrasensitive therapeutic drug monitoring of methotrexate by a structure-switching aptamer with cascade primer exchange reaction

He, J., Wang, J., Zhang, M., & Shi, G. (2022) · The Analyst · doi:10.1039/d2an01658c · Cited by 10

CasSABER for Programmable In Situ Visualization of Low and Nonrepetitive Gene Loci

Li, Y., Huang, D., Pei, Y., Wu, Y., Xu, R., Quan, F., Gao, H., Zhang, J., Hou, H., Zhang, K., et al. (2023) · Analytical Chemistry · doi:10.1021/acs.analchem.2c04867 · Cited by 10

3D deconvolution of human skin immune architecture with Multiplex Annotated Tissue Imaging System

Scholaert, M., Houmadi, R., Martin, J.-C., Serhan, N., Tauber, M., Braun, E. J., Basso, L., Merle, E., Descargues, P., Viguier, M. A., et al. (2023) · Science Advances · doi:10.1126/sciadv.adf9491 · Cited by 10

Enhanced expansion microscopy to measure nanoscale structural and biochemical remodeling in single cells

Sheard, T. M. D., & Jayasinghe, I. (2020) · Methods in cell biology · doi:10.1016/bs.mcb.2020.04.019 · Cited by 10

Advanced technologies for single-cell in situ protein profiling

Zhou, W. J., Ni, X., Xie, C., Fan, Q., & Liu, D. (2021) · Science China Chemistry · doi:10.1007/s11426-021-1110-7 · Cited by 10

High Dimensional Proteomic Multiplex Imaging of the Central Nervous System Using the COMET™ SystemPreprint

Najem, H., Pacheco, S., Turunen, J. R., Tripathi, S., Steffens, A., McCortney, K., Walshon, J. P., Chandler, J., Stupp, R., Lesniak, M. S., et al. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.02.14.638299 · Cited by 12

Resonant Raman-Active Polymer Dot Barcodes for Multiplex Cell Mapping

Jeong, J., Sutton, J. J., Ryu, H. S., Kang, M., Tay, E. J., Nguyen, T. L., Gordon, K. C., Shim, S., & Woo, H. Y. (2023) · ACS Nano · doi:10.1021/acsnano.2c11240 · Cited by 9

On-demand expansion fluorescence and photoacoustic microscopy (ExFLPAM)

Mu, X., Ma, C., Mei, X., Liao, J., Bojar, R., Kuang, S., Rong, Q., Yao, J., & Zhang, Y. S. (2024) · Photoacoustics · doi:10.1016/j.pacs.2024.100610 · Cited by 9

From imaging a single cell to implementing precision medicine: an exciting new era

Karacosta, L. G. (2021) · Emerging Topics in Life Sciences · doi:10.1042/etls20210219 · Cited by 12

Automated multimodal fluorescence microscopy for hyperplex spatial-proteomics: Coupling microfluidic-based immunofluorescence to high resolution, high sensitivity, three-dimensional analysis of histological slides

Furia, L., Pelicci, S., Perillo, F., Bolognesi, M. M., Pelicci, P. G., Facciotti, F., Cattoretti, G., & Faretta, M. (2022) · Frontiers in Oncology · doi:10.3389/fonc.2022.960734 · Cited by 9

High-throughput multiplexed serology via the mass-spectrometric analysis of isotopically barcoded beads

Drainas, A. P., McIlwain, D. R., Dallas, A. E., Chu, T. P., Delgado‐González, A., Baron, M., Angulo‐Ibáñez, M., Trejo, A., Bai, Y., Hickey, J. W., et al. (2025) · Nature Biomedical Engineering · doi:10.1038/s41551-025-01349-0 · Cited by 9

Engineering protein activity into off-the-shelf DNA devices

Sekhon, H., & Loh, S. N. (2022) · Cell Reports Methods · doi:10.1016/j.crmeth.2022.100202 · Cited by 8

Multiplexed Single-Cell in Situ Protein Profiling

Chen, Y., & Guo, J. (2022) · ACS Measurement Science Au · doi:10.1021/acsmeasuresciau.2c00011 · Cited by 8

A novel self-feedback biosensor for label-free detection of APE1 by primer exchange reaction and rolling circle amplification/dimeric G-quadruplex

Qi, Y., Du, Y., Kang, Q., Yang, X., & Xiang, H. (2023) · Microchemical Journal · doi:10.1016/j.microc.2023.109246 · Cited by 8

New tools to study renal fibrogenesis

Liao, X., Scheidereit, E., & Kuppe, C. (2024) · Current Opinion in Nephrology & Hypertension · doi:10.1097/mnh.0000000000000988 · Cited by 8

ARTseq-FISH reveals position-dependent differences in gene expression of micropatterned mESCs

Hu, X., van Sluijs, B., García‐Blay, Ó., Stepanov, Y., Rietrae, K., Huck, W. T. S., & Hansen, M. M. K. (2024) · Nature Communications · doi:10.1038/s41467-024-48107-5 · Cited by 10

Ultrasensitive Detection of Cancer Biomarkers Using Photonic-Crystal-Enhanced Single-Molecule Imaging

Liu, S., Ma, B., Qi, L., Ping, J., Che, Y., Zhang, Y., Su, M., Song, Y., Qi, L., Jiang, Y., et al. (2024) · Analytical Chemistry · doi:10.1021/acs.analchem.4c02863 · Cited by 8

A Picture Worth a Thousand Molecules—Integrative Technologies for Mapping Subcellular Molecular Organization and Plasticity in Developing Circuits

Minehart, J. A., & Speer, C. M. (2021) · Frontiers in Synaptic Neuroscience · doi:10.3389/fnsyn.2020.615059 · Cited by 9

TRIPODD: a Novel Fluorescence Imaging Platform for In Situ Quantification of Drug Distribution and Therapeutic Response

McMahon, N. P., Solanki, A., Wang, L. G., Montaño, A. R., Jones, J. A., Samkoe, K. S., Tichauer, K. M., & Gibbs, S. L. (2021) · Molecular Imaging and Biology · doi:10.1007/s11307-021-01589-x · Cited by 8

An overview of multiplexed analyses of CAR T-cell therapies: insights and potential

DePriest, B. P., Vieira, N., Bidgoli, A., & Paczesny, S. (2021) · Expert Review of Proteomics · doi:10.1080/14789450.2021.1992276 · Cited by 9

Skin‐ny deeping: Uncovering immune cell behavior and function through imaging techniques*

Tan, Y., Tey, H. L., Chong, S. Z., & Ng, L. G. (2021) · Immunological Reviews · doi:10.1111/imr.13049 · Cited by 8

Neutralizing IFNL3 Autoantibodies in Severe COVID-19 Identified Using Molecular Indexing of Proteins by Self-AssemblyPreprint

Credle, J. J., Gunn, J., Sangkhapreecha, P., Monaco, D. R., Zheng, X. A., Tsai, H.-J., Wilbon, A., Morgenlander, W. R., Dong, Y. W., Jayaraman, S., et al. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.03.02.432977 · Cited by 8

Spatial Epitope Barcoding Reveals Subclonal Tumor Patch BehaviorsPreprint

Clavé, X. R., Drainas, A. P., Jiang, S., Bai, Y., Baron, M., Zhu, B., Markovic, M., Coles, G. L., Bassik, M. C., Sage, J., et al. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.06.29.449991 · Cited by 8

Galaxy-ME: A Web-based Software Resource for Interactive Analysis of Multiplex Tissue Imaging DatasetsPreprint

Creason, A., Watson, C., Gu, Q., Persson, D., Sargent, L., Chen, Y., Lin, J., Sivagnanam, S., Wünnemann, F., Nirmal, A. J., et al. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.08.18.504436 · Cited by 9

Spatial omics strategies for investigating human carotid atherosclerotic disease

Wan, J., Sun, Z., Feng, X., Zhou, P., Macho, M. T. N., Jiao, Z., Cao, H., Zhang, C., Lin, R., Zhang, X., et al. (2025) · Clinical and Translational Medicine · doi:10.1002/ctm2.70277 · Cited by 7

Spatial protein heterogeneity analysis in frozen tissues to evaluate tumor heterogeneity

Khartchenko, A. F., Rapsomaniki, M., Sobottka, B., Schraml, P., & Kaigala, G. V. (2021) · PLoS ONE · doi:10.1371/journal.pone.0259332 · Cited by 7

Molecular robotic agents that survey molecular landscapes for information retrieval

Woo, S., Saka, S. K., Xuan, F., & Yin, P. (2024) · Nature Communications · doi:10.1038/s41467-024-46978-2 · Cited by 7

Orthogonal DNA Self‐Assembly‐Based Expansion Microscopy Platform for Amplified, Multiplexed Biomarker Imaging

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Portable Device with Nicking Enzyme Enhanced Special RCA on μPADs toward Sensitive Detection of High-Risk HPV Infection

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Highly Multiplexed in Situ Protein Imaging Using DNA-Exchange-Imaging and Immuno-SABER

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DNA-barcoded signal amplification for imaging mass cytometry enables sensitive and highly multiplexed tissue imaging

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Combining Qdot Nanotechnology and DNA Nanotechnology for Sensitive Single‐Cell Imaging

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