The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
Hap2-Ino80 facilitated transcription promotes de novo establishment of CENP-A chromatin
Open accessPreprint — published as 10.1101/gad.332536.119
Abstract
SUMMARY: Centromeres are maintained epigenetically by the presence of CENP-A, an evolutionarily-conserved histone H3 variant, which directs kinetochore assembly and hence, centromere function. To identify factors that promote assembly of CENP-A chromatin, we affinity selected solubilised fission yeast CENP-A Cnp1 chromatin. All subunits of the Ino80 complex were enriched, including the auxiliary subunit Hap2. In addition to a role in maintenance of CENP-A Cnp1 chromatin integrity at endogenous centromeres, Hap2 is required for de novo assembly of CENP-A Cnp1 chromatin on naïve centromere DNA and promotes H3 turnover on centromere regions and other loci prone to CENP-A Cnp1 deposition. Prior to CENP-A Cnp1 chromatin assembly, Hap2 facilitates transcription from centromere DNA. These analyses suggest that Hap2-Ino80 destabilises H3 nucleosomes on centromere DNA through transcription-coupled histone H3 turnover, driving the replacement of resident H3 nucleosomes with CENP-A Cnp1 nucleosomes. These inherent properties define centromere DNA by directing a program that mediates CENP-A Cnp1 assembly on appropriate sequences.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Global quantification of mammalian gene expression control
Schwanhäusser, B., Busse, D., Li, N., Dittmar, G., Schuchhardt, J., Wolf, J., Chen, W., & Selbach, M. (2011) · Nature · doi:10.1038/nature10098 · Cited by 6,566
Flagged first, then by citations
Research works printed but not linked: 118
- 10.1101/gad.250902.114 · DOI
- 10.1038/nrg2466 · DOI
- 10.1016/0092-8674(94)90180-5 · DOI
- 10.1101/gad.9.2.218 · DOI
- 10.1016/j.mrfmmm.2006.10.006 · DOI
- 10.1074/jbc.M700623200 · DOI
- 10.1083/jcb.201012017 · DOI
- 10.1091/mbc.5.7.747 · DOI
- 10.1146/annurev.biochem.71.110601.135400 · DOI
- 10.1038/emboj.2010.329 · DOI
- 10.1242/jcs.090639 · DOI
- 10.1016/j.cell.2011.02.002 · DOI
- 10.1083/jcb.201611087 · DOI
- 10.1038/ncomms15616 · DOI
- 10.1038/nsmb1276 · DOI
- 10.1091/mbc.E09-06-0489 · DOI
- 10.1371/journal.pgen.0030121 · DOI
- 10.1371/journal.pone.0069673 · DOI
- 10.1371/journal.pgen.1004986 · DOI
- 10.1073/pnas.1108705109 · DOI
- 10.1371/journal.pbio.3000241 · DOI
- 10.1083/jcb.201305036 · DOI
- 10.1016/j.devcel.2015.05.012 · DOI
- 10.1074/jbc.M111.222505 · DOI
- 10.1105/tpc.003079 · DOI
- 10.1074/jbc.M111.228510 · DOI
- 10.1371/journal.pgen.1002985 · DOI
- 10.1038/s41467-016-0009-6 · DOI · Paper page
- 10.1371/journal.pgen.1000354 · DOI
- 10.1146/annurev.biochem.77.062706.153223 · DOI
- 10.1016/S0092-8674(03)00115-6 · DOI
- 10.1016/j.tibs.2008.10.010 · DOI
- 2008, MaxQuant enables high peptide identification rates, individualized p, p.b.-range mass accuracies and proteome-wide protein quantification. Nat. Biotechnol, 26, 1367
- 10.1021/pr101065j · DOI
- 10.1074/mcp.M113.031591 · DOI · Paper page
- 10.1126/science.1134053 · DOI · Paper page
- 10.1007/978-3-319-58592-5_11 · DOI
- 10.1083/jcb.200806038 · DOI
- 10.1016/j.devcel.2015.03.020 · DOI
- 10.1126/science.1150944 · DOI
- 10.1016/j.devcel.2014.08.016 · DOI
- 2017, Transcriptional repression of frequency by the IEC-1-INO80 complex is required for normal Neurospora circadian clock function, PLoS Genet, 13, e1006732, 10.1371/journal.pgen.1006732 · DOI
- 10.1534/genetics.114.171173 · DOI
- 10.1073/pnas.89.5.1695 · DOI
- 10.1083/jcb.201604029 · DOI
- 10.1016/0076-6879(83)01013-7 · DOI
- 10.1038/sj.emboj.7601585 · DOI
- 10.1038/nbt.3121 · DOI
- 10.1128/MCB.7.7.2397 · DOI
- 10.1128/MCB.01117-09 · DOI
- 10.1083/jcb.201210106 · DOI
- 10.1126/science.1158699 · DOI
- 10.1083/jcb.200701066 · DOI
- 10.1101/gad.1547707 · DOI
- 10.1128/MCB.22.20.7168-7183.2002 · DOI
- 10.1126/science.1172026 · DOI
- 10.1371/journal.pgen.1000400 · DOI
- 10.1016/0888-7543(91)90128-2 · DOI
- 10.1128/MCB.01858-08 · DOI
- 10.1101/gad.824700 · DOI
- 10.1038/nrc1714 · DOI
- 10.1016/j.molcel.2015.10.028 · DOI
- 10.1098/rsob.120078 · DOI
- 10.1038/nmeth.1923 · DOI · Paper page
- 10.1101/gad.9.10.1188 · DOI
- 10.1105/tpc.106.043174 · DOI
- 10.1093/bioinformatics/btp352 · DOI · Paper page
- 10.1073/pnas.1821384116 · DOI
- 2019, Human Artificial Chromosomes that Bypass Centromeric DNA, Cell, 178, 624, 10.1016/j.cell.2019.06.006 · DOI
- 10.1016/j.cell.2014.04.036 · DOI
- 10.1038/nrm.2015.5 · DOI
- 10.1016/j.devcel.2017.07.001 · DOI
- 10.1371/journal.pgen.1002068 · DOI
- 10.1126/science.1206880 · DOI
- 10.1016/0076-6879(91)94059-L · DOI · Paper page
- 10.1038/nrg.2016.157 · DOI
- 10.1242/jcs.00697 · DOI
- 10.1016/j.devcel.2008.02.001 · DOI
- 10.1016/j.ydbio.2014.01.006 · DOI
- 10.1016/j.cub.2011.08.056 · DOI
- 10.1016/j.devcel.2016.05.006 · DOI
- 10.1038/nmeth1060 · DOI
- 10.1016/j.cell.2010.12.021 · DOI
- 2000, Distinct protein interaction domains and protein spreading in a complex centromere, Genes Dev, 14, 783, 10.1101/gad.14.7.783 · DOI
- 10.1016/j.cub.2004.09.086 · DOI
- 10.1083/jcb.200903088 · DOI
- 2004, Kinetochore and heterochromatin domains of the fission yeast centromere, Chromosom. Res, 12, 521, 10.1023/B:CHRO.0000036586.81775.8b · DOI
- 10.1083/jcb.200212110 · DOI
- Poli, J. , Gasser, S.M. , and Papamichos-Chronakis, M. (2017). The INO80 remodeller in transcription, replication and repair. Philos. Trans. R. Soc. B Biol. Sci. 372. · DOI
- 10.1093/bioinformatics/btq033 · DOI · Paper page
- 10.1093/nar/gku365 · DOI · Paper page
- 10.1083/jcb.201404097 · DOI
- 10.1038/nsmb.2776 · DOI
- 10.1016/j.cub.2006.11.051 · DOI
- 10.1016/j.devcel.2013.02.009 · DOI
- 10.1038/35020123 · DOI
- 10.1016/j.cub.2018.10.049 · DOI
- 10.1126/science.1078062 · DOI · Paper page
- 10.1002/yea.753 · DOI
- 2019, Interspecies conservation of organisation and function between nonhomologous regional centromeres, Nat. Commun, 10, 2343, 10.1038/s41467-019-09824-4 · DOI
- 10.1016/j.cell.2013.08.016 · DOI
- 2016, Constitutive turnover of histone H2A.Z at yeast promoters requires the preinitiation complex, Elife, 5, e14243, 10.7554/eLife.14243 · DOI
- 10.1038/nmeth.3901 · DOI · Paper page
- 10.1128/MCB.01035-10 · DOI
- 10.1038/nrm3941 · DOI
- 10.1073/pnas.0911164107 · DOI
- 10.1093/nar/gks1262 · DOI · Paper page
- 10.1093/nar/gki579 · DOI
- 10.1093/nar/gku846 · DOI
- 10.1126/science.1229758 · DOI
- 10.1038/ncomms6945 · DOI
- 10.1093/nar/gkw509 · DOI
- 10.7554/eLife.02203 · DOI
- 10.1101/gad.256255.114 · DOI
- 10.1128/MCB.21.17.5979-5991.2001 · DOI
- 10.1016/j.cell.2013.08.043 · DOI
- 10.1016/j.cell.2005.08.036 · DOI
- 10.1101/gad.277178.115 · DOI
Metadata
- Authors
- Singh, P. P., Shukla, M., White, S. A., Tong, P., Auchynnikava, T., Spanos, C., Rappsilber, J., Pidoux, A. L., & Allshire, R. C.
- Affiliations
- Wellcome Centre for Cell Biology (GB)
- Corresponding author
- Allshire, Robin C.
- Venue
- bioRxiv (Cold Spring Harbor Laboratory)
- Publisher
- openRxiv
- Published
- 2019-09-23
- OpenAlex
- W2974105884
- Cited by
- 0
- References
- 1
- Type
- posted content
- Language
- en
- Open access
- green
- doi.org
- Locations
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
- Funders
- Darwin Trust of Edinburgh (103139)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Microtubule and mitosis dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Chromosomal and Genetic Variations
- Keywords
- CENP-A, Cnp1, centromere, HAP2, INO80 complex, centromere epigenetics, transcription, nucleosome destabilization, centromere DNA, kinetochore assembly, Schizosaccharomyces pombe, histone variant deposition
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review