Canalization of auxin flow by Aux/IAA-ARF-dependent feedback regulation of PIN polarity

Local, Efflux-Dependent Auxin Gradients as a Common Module for Plant Organ Formation

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Auxin: Regulation, Action, and Interaction

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The F-box protein TIR1 is an auxin receptor

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The PIN auxin efflux facilitator network controls growth and patterning in Arabidopsis roots

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Efflux-dependent auxin gradients establish the apical–basal axis of Arabidopsis

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The Arabidopsis F-box protein TIR1 is an auxin receptor

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Regulation of phyllotaxis by polar auxin transport

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Patterns in Plant Development

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Auxin transport inhibitors block PIN1 cycling and vesicle trafficking

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Patterns of Auxin Transport and Gene Expression during Primordium Development Revealed by Live Imaging of the Arabidopsis Inflorescence Meristem

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Auxins: Biosynthesis, metabolism, and transport

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Measure for measure: determining, inferring and guessing auxin gradients at the root tip

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Histological Changes Associated with the Graft Union Development in Tomato

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Lateral meristems of higher plants: Phytohormonal and genetic control

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The effect of polar auxin transport on adventitious branches formation in Gracilaria lichenoides in vitro

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SlARF2a plays a negative role in mediating axillary shoot formation

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A complex systems approach to Arabidopsis root stem-cell niche developmental mechanisms: from molecules, to networks, to morphogenesis

Azpeitia, E. M., & Alvarez-Buylla, E. R. (2012) · Plant Molecular Biology · doi:10.1007/s11103-012-9954-6 · Cited by 13

The Small Molecule 2-Furylacrylic Acid Inhibits Auxin-Mediated Responses in Arabidopsis thaliana

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Axes and polarities in leaf vein formation

Scarpella, E. (2023) · PLANT PHYSIOLOGY · doi:10.1093/plphys/kiad321 · Cited by 12

Novel Vein Patterns in Arabidopsis Induced by Small Molecules

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Brassinosteroid Signaling Converges With Auxin-Mediated C3H17 to Regulate Xylem Formation in Populus

Tang, X., Wang, C., Liu, Y., He, G. Q., Ma, N., Chai, G., Li, S., Xu, H., & Zhou, G. (2020) · Frontiers in Plant Science · doi:10.3389/fpls.2020.586014 · Cited by 13

Auxin analog-induced Ca2+ signaling is independent of inhibition of endosomal aggregation in Arabidopsis roots

Wang, R., Himschoot, E., Grenzi, M., Chen, J., Safi, A., Krebs, M., Schumacher, K., Nowack, M. K., Moeder, W., Yoshioka, K., et al. (2022) · Journal of Experimental Botany · doi:10.1093/jxb/erac019 · Cited by 12

Modelling auxin efflux carrier phosphorylation and localization

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Microcystin-LR, a cyanobacterial toxin affects root development by changing levels of PIN proteins and auxin response in Arabidopsis roots

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Mathematical model of auxin distribution in the plant root

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PXC2, a polarized receptor kinase, functions to repress ground tissue cell divisions and restrict stele sizePreprint

Goff, J., Rony, R. M. I. K., Ge, Z., Hajný, J., Rodríguez-Furlán, C., Friml, J., & Norman, J. V. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.02.11.429611 · Cited by 12

Transcriptomic Response to Drought Stress in Populus davidiana Dode

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Insights into the regulation of C4 leaf development from comparative transcriptomic analysis

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A cornichon protein controls polar localization of the PINA auxin transporter in Physcomitrium patens

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Intercellular Transport of Auxin

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Identification and Network-Enabled Characterization of Auxin Response Factor Genes in Medicago truncatula

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mRNA transcription profile of potato (Solanum tuberosum L.) in response to explant cutting

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Full-length transcriptome analysis revealed that 2,4-dichlorophenoxyacetic acid promoted in vitro bulblet initiation in lily by affecting carbohydrate metabolism and auxin signaling

Gao, C., Zhang, L., Xu, Y. H., Liu, Y., Xiao, X., Liu, C., Xia, Y., Wu, Y. R., & Ren, Z. (2023) · Frontiers in Plant Science · doi:10.3389/fpls.2023.1236315 · Cited by 11

Plant Roots: Recycled Auxin Energizes Patterning and Growth

Doerner, P. W. (2008) · Current Biology · doi:10.1016/j.cub.2007.11.048 · Cited by 10

Overgrowth of Douglas fir (Pseudotsuga menziesii Franco) stumps with regenerative tissue as an example of cell ordering and tissue reorganization

Zajączkowska, U. (2014) · Planta · doi:10.1007/s00425-014-2142-y · Cited by 10

The Hormonal Signals that Regulate Plant Vascular Differentiation

Aloni, R. (2021) · Springer eBooks · doi:10.1007/978-3-030-53202-4_3 · Cited by 9

Auxin resistant 2 and short hypocotyl 2 regulate cotton fiber initiation and elongation

Jin, F., Zhu, L., Hou, L., Li, H., Li, L., & Xiao, G. (2024) · PLANT PHYSIOLOGY · doi:10.1093/plphys/kiae183 · Cited by 9

Posttranslational Modifications of Plasma Membrane Proteins and Their Implications for Plant Growth and Development

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An Arabidopsis mutant deficient in phosphatidylinositol-4-phosphate kinases ß1 and ß2 displays altered auxin-related responses in roots

Starodubtseva, A., Kalachova, T., Retzer, K., Jelínková, A., Dobrev, P. I., Lacek, J., Pospíchalová, R., Angelini, J., Guivarc’h, A., Pateyron, S., et al. (2022) · Scientific Reports · doi:10.1038/s41598-022-10458-8 · Cited by 12

Effective diffusion rates and cross-correlation analysis of “acid growth” data

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ZIFL1.1 transporter modulates polar auxin transport by stabilizing membrane abundance of multiple PINs inArabidopsisroot tip

Rémy, E., Baster, P., Friml, J., & Duque, P. (2013) · Plant Signaling & Behavior · doi:10.4161/psb.25688 · Cited by 9

The physiological mechanism of a drooping leaf2 mutation in rice

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PIN1a-mediated auxin release from rootstock cotyledon contributes to healing in watermelon as revealed by seeds soaking-VIGS and cotyledon grafting

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Here comes the sun: integration of light, temperature, and auxin during herbaceous plant grafting

Han, R., Rui, L., Zhou, Y., & Thomas, H. R. (2025) · Planta · doi:10.1007/s00425-025-04694-1 · Cited by 8

The Steroid Saponin Protodioscin Modulates Arabidopsis thaliana Root Morphology Altering Auxin Homeostasis, Transport and Distribution

Wagner, A. L. S., Araniti, F., Bruno, L., Ishii‐Iwamoto, E. L., & Abenavoli, M. R. (2021) · Plants · doi:10.3390/plants10081600 · Cited by 8

Role of Phytohormones in Antioxidant Metabolism in Plants under Salinity and Water Stress

Rohman, M. M., Tonny, S. H., Alam, S. S., Omy, S. H., Akhi, A. H., Raihan, H. U. Z., Akter, T., Parvin, K., & Hasanuzzaman, M. (2022) · Springer eBooks · doi:10.1007/978-981-16-5059-8_7 · Cited by 8

The Dicot Root as a Model System for Studying Organogenesis

Lavenus, J., Lucas, M., Laplaze, L., & Guyomarc’h, S. (2012) · Methods in molecular biology · doi:10.1007/978-1-62703-221-6_3 · Cited by 8

Gene expression profiling reveals the effects of light on adventitious root formation in lotus seedlings (Nelumbo nucifera Gaertn.)

Libao, C., Yuyan, H., Minrong, Z., Xu, X., Zhiguang, S., Chunfei, W., Li, S., & Hu, Z. (2020) · BMC Genomics · doi:10.1186/s12864-020-07098-5 · Cited by 8

Impact of the Environment on Root Architecture in Dicotyledoneous Plants

Gruber, V., Zahaf, O., Diet, A., Zelicourt, A. D., de Lorenzo, L., & Crespi, M. D. (2010) · Springer eBooks · doi:10.1007/978-3-540-85546-0_5 · Cited by 8

A proteomics analysis of adventitious root formation after leaf removal in lotus (Nelumbo nucifera Gaertn.)

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Transcriptomic analysis reveals ethylene’s regulation involved in adventitious roots formation in lotus (Nelumbo nucifera Gaertn.)

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I am all ears: Maximize maize doubled haploid success by promoting axillary branch elongation

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The topless plant developmental phenotype explained!

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Plasmodesmata callose binding protein 2 contributes to the regulation of cambium/phloem formation and auxin response during the tissue reunion process in incised Arabidopsis stem

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The Hydrophilic Loop of Arabidopsis PIN1 Auxin Efflux Carrier Harbors Hallmarks of an Intrinsically Disordered Protein

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Cell Polarity: Stretching Prevents Developmental Cramps

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Endocytic Trafficking of PIN Proteins and Auxin Transport

Nodzyński, T., Vanneste, S., & Friml, J. (2012) · Springer eBooks · doi:10.1007/978-3-642-32463-5_8 · Cited by 7

Transcriptome profile analysis reveals the ontogenesis of rooted chichi in Ginkgo biloba L.

Liu, X., Sun, L., Wu, Q., Men, X., Yao, L., & ShiYan, X. (2018) · Gene · doi:10.1016/j.gene.2018.05.066 · Cited by 7

Self-regulation of PIN1-driven auxin transport by cell surface-based auxin signaling in ArabidopsisPreprint

Wang, J., Chang, M., Huang, R., Gallei, M., Friml, J., Yu, Y., Wen, M., Yang, Z., & Xu, T. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.11.30.518523 · Cited by 7

A BRC1-modulated switch in auxin efflux accounts for the competition between Arabidopsis axillary buds

Nahas, Z., Bridgen, A. J., Loman, T. E., Dillon, J., Abley, K., Cano‐Ramirez, D. L., Ticchiarelli, F., Seale, M., Locke, J. C. W., & Leyser, O. (2025) · PLoS Biology · doi:10.1371/journal.pbio.3003395 · Cited by 6

Auxin Transporters Controlling Plant Development

Petrášek, J., Malínská, K., & Zažı́malová, E. (2010) · Signaling and communication in plants · doi:10.1007/978-3-642-14369-4_9 · Cited by 6

Transcriptome Analysis of Active Axillary Buds from Narrow-crown and Broad-crown Poplars Provides Insight into the Phytohormone Regulatory Network for Branching Angle

Tian, Y., Wang, J., Guo, H., Qu, K., Xu, D., Hou, L., & Li, J. (2021) · Plant Molecular Biology Reporter · doi:10.1007/s11105-020-01273-4 · Cited by 6

„If I have seen further, it is by standing on the shoulders of giants”

Matysiak, A. (2016) · Studia Demograficzne · Cited by 6

Evolutionary Aspects of Auxin Signalling

Ramakrishna, P., & Smet, I. D. (2014) · Springer eBooks · doi:10.1007/978-3-7091-1526-8_13 · Cited by 6

Casting the Net—Connecting Auxin Signaling to the Plant GenomePreprint

Ma, Y., Wolf, S., & Lohmann, J. U. (2021) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a040006 · Cited by 6

Fertilization and Fruit Initiation

Fuentes, S., & Vivian‐Smith, A. (2017) · Wiley eBooks · doi:10.1002/9781119312994.apr0411 · Cited by 6

Transcriptomic analyses to summarize gene expression patterns that occur during leaf initiation of Chinese cabbage

Sun, X., Liu, Z., Liu, R., Bucher, J., Zhao, J., Visser, R. G. F., & Bonnema, G. (2024) · Horticulture Research · doi:10.1093/hr/uhae059 · Cited by 5

Pectin Metabolism Influences Phloem Architecture and Flowering Time in Arabidopsis Thaliana

Zhang, Q., Du, J., Hao, S., Leng, Z., Liu, W., Zhao, C., Yu, Y., Chen, L., Anderson, C. T., & Xiao, C. (2025) · Advanced Science · doi:10.1002/advs.202502980 · Cited by 6

Irrepressible, truncated Auxin Response Factors

Ckurshumova, W., Krogan, N. T., Marcos, D., Caragea, A. E., & Berleth, T. (2012) · Plant Signaling & Behavior · doi:10.4161/psb.20366 · Cited by 5

Functional studies of lignin biosynthesis genes and putative flowering gene in Miscanthus x giganteus and studies on indolyl glucosinolate biosynthesis and translocation in Brassica oleracea

Kim, H. S. (2010) · Illinois Digital Environment for Access to Learning and Scholarship (University of Illinois at Urbana-Champaign) · Cited by 5

Bacteriophage Tubulins: Carrying Their Own Cytoskeleton Key

Haeusser, D. P., & Margolin, W. (2012) · Current Biology · doi:10.1016/j.cub.2012.07.027 · Cited by 5

Deformable Cell Model and its Application to Growth of Plant Meristem

Bessonov, N., Mironova, V., & Volpert, V. A. (2013) · Mathematical Modelling of Natural Phenomena · doi:10.1051/mmnp/20138405 · Cited by 5

A comparative proteomic analysis for adventitious root formation in lotus root (Nelumbo nuciferaGaertn)

Libao, C., Runzhi, J., Mengli, Y., Li, L., & Li, S. (2016) · Zeitschrift für Naturforschung C · doi:10.1515/znc-2016-0170 · Cited by 5

Auxin as Part of the Wounding Response in Plants

Casalongué, C. A., Fiol, D. F., París, R., Godoy, A. V., D’Ippólito, S., & Terrile, M. C. (2012) · Springer eBooks · doi:10.1007/978-3-642-25829-9_5 · Cited by 5

NO VEINfacilitates auxin-mediated development in Arabidopsis

Tsugeki, R., Ditengou, F. A., Palme, K. J., & Okada, K. (2010) · Plant Signaling & Behavior · doi:10.4161/psb.5.10.12948 · Cited by 5

Role ofHEMIVENATAand the Ubiquitin Pathway in Venation Pattern Formation

Candela, H., Alonso-Peral, M. M., Ponce, M. R., & Micol, J. L. (2007) · Plant Signaling & Behavior · doi:10.4161/psb.2.4.3869 · Cited by 5

Shoot Branching and Plant Architecture

Bennett, T., Ward, S. P., & Leyser, O. (2016) · Wiley eBooks · doi:10.1002/9780470015902.a0020122.pub2 · Cited by 5

Role of TIR1/AFB family genes during grafting in Carya cathayensis

Mei, J., Tang, X., Gu, Y., Lü, H., Yang, Y., Shen, Q., Yang, L., Li, B., Zuo, J., Singh, V. P., et al. (2024) · Frontiers in Plant Science · doi:10.3389/fpls.2024.1494579 · Cited by 4

Constitutive Active CPK30 Interferes With Root Growth and Endomembrane Trafficking in Arabidopsis thaliana

Wang, R., Himschoot, E., Chen, J., Boudsocq, M., Geelen, D., Friml, J., Beeckman, T., & Vanneste, S. (2022) · Frontiers in Plant Science · doi:10.3389/fpls.2022.862398 · Cited by 4

Plant Hormones in Wood Formation -Novel Insights into the Roles of Ethylene and Gibberellins

Björklund, S. (2007) · Cited by 4

Mechanism of Auxin Mediated Stress Signaling in Plants

Lekshmy, S., Krishna, G., Jha, S., & Sairam, R. K. (2017) · doi:10.1002/9781118889022.ch2 · Cited by 4

Genetic analysis and gene fine mapping of a rolling leaf mutant (rl 11(t) ) in rice (Oryza sativa L.)

Zhou, Y., Fang, Y., Zhu, J., Sheng-qiang, L., Gu, F., Gu, M., & Liang, G. (2010) · Chinese Science Bulletin · doi:10.1007/s11434-010-3137-0 · Cited by 3

Analysis of Space-Temporal Symmetry in the Early Embryogenesis ofCalla palustrisL., Araceae

Rudskiy, I. V., Титова, Г. Е., & Batygina, T. B. (2010) · Mathematical Modelling of Natural Phenomena · doi:10.1051/mmnp/20116203 · Cited by 3

From genes to patterns: Auxin distribution and auxin-dependent gene regulation in plant pattern formation

Krogan, N. T., & Berleth, T. (2007) · Canadian Journal of Botany · doi:10.1139/b07-029 · Cited by 3

Hormonal Control of Polar Auxin Transport

Sun, J., Qi, L., & Li, C. (2013) · Signaling and communication in plants · doi:10.1007/978-3-642-35299-7_6 · Cited by 3

Receptor-like-kinase-interacting protein TOW stabilizes PIN transporters for auxin canalization

Li, M., Rýdza, N., Mazur, E., Molnár, G., Nodzyński, T., & Friml, J. (2026) · Current Biology · doi:10.1016/j.cub.2026.02.023 · Cited by 2

Morphogenesis of moss leaf-like organs through variations in deeply shared developmental principles

Lin, W., Collet, L., Mancini, L., Deshpande, M., Lane, B., Lapointe, B. P., Bagniewska‐Zadworna, A., Routier‐Kierzkowska, A., Smith, R. S., Coudert, Y., et al. (2026) · Science Advances · doi:10.1126/sciadv.aee6959 · Cited by 2

Auxin Transport and Signaling in Leaf Vascular Patterning

Scarpella, E., & Berleth, T. (2013) · Signaling and communication in plants · doi:10.1007/978-3-642-35299-7_7 · Cited by 2

Mathematical Modelling of Auxin Transport in Plant Tissues: Flux Meets Signalling and Growth

Allen, H. R., & Mariya Ptashnyk, B. (2020) · Bulletin of Mathematical Biology · doi:10.1007/s11538-019-00685-y · Cited by 2

The auxin signaling pathway to its PIN transporters: insights based on a meta-analysis of auxin-induced transcriptomes

Коврижных, В. В., Мустафин, З. С., & Багаутдинова, З. З. (2021) · Vavilov Journal of Genetics and Breeding · doi:10.18699/vj21.005 · Cited by 2

Fluorescent Auxin Analogs Report Two Auxin Binding Sites with Different Subcellular Distribution and Affinities: A Cue for Non-Transcriptional Auxin Signaling

Huang, X. Y., Maisch, J., Hayashi, K., & Nick, P. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms23158593 · Cited by 2

Identification of novel inhibitors of plant GH3 IAA ‐amido synthetases through molecular docking studies

Luque, A., Blanes‐Mira, C., Caballero, L., Martínez‐Melgarejo, P. A., Nicolás‐Albujer, M., Pérez‐Alfocea, F., Fernandez-Ballester, G. J., & Pérez‐Pérez, J. M. (2024) · Physiologia Plantarum · doi:10.1111/ppl.14612 · Cited by 2

Auxin fluctuation and PIN polarization in moss leaf cell reprogramming

Tang, H., Chen, L.-H., & Friml, J. (2025) · Plant and Cell Physiology · doi:10.1093/pcp/pcaf008 · Cited by 2

Auxin on the Road Navigated by Cellular PIN Polarity

Baster, P., & Friml, J. (2014) · Springer eBooks · doi:10.1007/978-3-7091-1526-8_8 · Cited by 2

Models to reconcile plant science and stochasticity

Collaudin, S., & Mirabet, V. (2014) · Frontiers in Plant Science · doi:10.3389/fpls.2014.00643 · Cited by 2

Vascular Tissue Development and Regeneration in the Model Plant Arabidopsis

Mazur, E., & Friml, J. (2017) · InTech eBooks · doi:10.5772/intechopen.69712 · Cited by 2

Auxin coordinates cell division and cell fate specification during lateral root initiation

Vanneste, S. (2007) · Ghent University Academic Bibliography (Ghent University) · Cited by 2

How Moving Hormonal Signals Regulate Plant Vascular Differentiation, Adaptation, and Evolution: Hypotheses and Evidence

Aloni, R. (2023) · Progress in botany · doi:10.1007/124_2023_77 · Cited by 1

BZR1 coordinates multiple pathways to promote axillary bud outgrowth in model M. truncatula and forage yield in alfalfa

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