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A Nomenclature System for the Tree of Human Y-Chromosomal Binary Haplogroups
Abstract
The Y chromosome contains the largest nonrecombining block in the human genome. By virtue of its many polymorphisms, it is now the most informative haplotyping system, with applications in evolutionary studies, forensics, medical genetics, and genealogical reconstruction. However, the emergence of several unrelated and nonsystematic nomenclatures for Y-chromosomal binary haplogroups is an increasing source of confusion. To resolve this issue, 245 markers were genotyped in a globally representative set of samples, 74 of which were males from the Y Chromosome Consortium cell line repository. A single most parsimonious phylogeny was constructed for the 153 binary haplogroups observed. A simple set of rules was developed to unambiguously label the different clades nested within this tree. This hierarchical nomenclature system supersedes and unifies past nomenclatures and allows the inclusion of additional mutations and haplogroups yet to be discovered. [Supplementary Table 1, available as an online supplement at www.genome.org, lists all published markers included in this survey and primer information.]
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“These data suggest that male members, MN0104 and MN0126, of the Golden family belong to haplogroup R1b-M343; however, only 4 biallelic markers were definable in MN0126 [31].”
From Molecular Genealogy of a Mongol Queen’s Family and Her Possible Kinship with Genghis Khan (2016) · cites this paper as [31]
In the citing paper
“MN0376 was affiliated with R1a1a-M17, a subclade of haplogroup R1, rather than R1b-M343 because he carried R-M207, R1-M173, and R1a1a-M17 but not R1b-M343 (Table 2 and S4 Fig) [31, 32].”
From Molecular Genealogy of a Mongol Queen’s Family and Her Possible Kinship with Genghis Khan (2016) · cites this paper as [31]
In the citing paper
“MN0126 was also positive for the same biallelic markers (R-M207 and R1b-M343) as those carried by MN0104 and negative for O-M175 and C-RPS4Y (Table 2 and S3 Fig) [31, 32].”
From Molecular Genealogy of a Mongol Queen’s Family and Her Possible Kinship with Genghis Khan (2016) · cites this paper as [31]
In the citing paper
“our unpublished data demonstrated that the Y-haplogroups R1b-M343 and R1a1a-M17 are distributed at 0.0% (0/101) and 0.99% (1/101) in modern-day Mongolians across the Mongolian plateau, respectively”
From Molecular Genealogy of a Mongol Queen’s Family and Her Possible Kinship with Genghis Khan (2016) · cites this paper as [31]
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Metadata
- Authors
- Consortium, T. Y. C.
- Venue
- Genome Research
- Publisher
- Cold Spring Harbor Laboratory
- Published
- 2002-02-01
- Volume
- 12
- Issue
- 2
- Pages
- 339-348
- ISSN
- 1088-9051
- 1549-5469
- Cited by
- 640
- References
- 0
- Language
- en
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