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Genome-Wide Analysis of the Odorant-Binding Protein Gene Family in Drosophila melanogaster
Open accessAbstract
Olfaction is of considerable importance to many insects in behaviors critical for survival and reproduction, including location of food sources, selection of mates, recognition of colony con-specifics, and determination of oviposition sites. An ubiquitous, but poorly understood, component of the insect's olfactory system is a group of odorant-binding proteins (OBPs) that are present at high concentrations in the aqueous lymph surrounding the dendrites of olfactory receptor neurons. OBPs are believed to shuttle odorants from the environment to the underlying odorant receptors, for which they could potentially serve as odorant presenters. Here we show that the Drosophila genome carries 51 potential OBP genes, a number comparable to that of its odorant-receptor genes. We find that the majority (73%) of these OBP-like genes occur in clusters of as many as nine genes, in contrast to what has been observed for the Drosophila odorant-receptor genes. Two of the presumptive OBP gene clusters each carries an odorant-receptor gene. We also report an intriguing subfamily of 12 putative OBPs that share a unique C-terminal structure with three conserved cysteines and a conserved proline. Members of this subfamily have not previously been described for any insect. We have performed phylogenetic analyses of the OBP-related proteins in Drosophila as well as other insects, and we discuss the duplication and divergence of the genes for this large family. [The sequence data from this study have been submitted to FlyBase. Annotations for these sequences are available as supplementary material at http://www.genome.org.]
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Cites
Molecular Cloning: A Laboratory Manual
Sambrook, J., Fritsch, E., & Maniatis, T. (1989) · UCLA - Biblioteca de Ciencias de la Salud · Cited by 133,589
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Altschul, S. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.17.3389 · Cited by 73,302
The neighbor-joining method: a new method for reconstructing phylogenetic trees.
(1987) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a040454 · Cited by 59,715
Thompson, J. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.24.4876 · Cited by 38,993
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions.
(1986) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a040410 · Cited by 4,894
A new method for predicting signal sequence cleavage sites
von Heijne, G. (1986) · Nucleic Acids Research · doi:10.1093/nar/14.11.4683 · Cited by 4,508
Comparative Genomics of the Eukaryotes
Rubin, G. M., Yandell, M. D., Wortman, J. R., Gabor, G. L., Miklos, Nelson, C. R., Hariharan, I. K., Fortini, M. E., Li, P. W., Apweiler, R., et al. (2000) · Science · doi:10.1126/science.287.5461.2204 · Cited by 1,698
A Spatial Map of Olfactory Receptor Expression in the Drosophila Antenna
Vosshall, L. B., Amrein, H., Morozov, P. S., Rzhetsky, A., & Axel, R. (1999) · Cell · doi:10.1016/s0092-8674(00)80582-6 · Cited by 1,177
A Novel Family of Divergent Seven-Transmembrane Proteins
Clyne, P. J., Warr, C. G., Freeman, M. R., Lessing, D., Kim, J., & Carlson, J. R. (1999) · Neuron · doi:10.1016/s0896-6273(00)81093-4 · Cited by 1,155
An Olfactory Sensory Map in the Fly Brain
Vosshall, L. B., Wong, A. M., & Axel, R. (2000) · Cell · doi:10.1016/s0092-8674(00)00021-0 · Cited by 1,101
MECHANISMS OF OLFACTORY DISCRIMINATION: Converging Evidence for Common Principles Across Phyla
Hildebrand, J. G., & Shepherd, G. M. (1997) · Annual Review of Neuroscience · doi:10.1146/annurev.neuro.20.1.595 · Cited by 1,074
Neurobiology of the Caenorhabditis elegans Genome
Bargmann, C. I. (1998) · Science · doi:10.1126/science.282.5396.2028 · Cited by 929
Sonnhammer, E. L. L., & Durbin, R. (1995) · Gene · doi:10.1016/0378-1119(95)00714-8 · Cited by 777
A chemosensory gene family encoding candidate gustatory and olfactory receptors in Drosophila.
Scott, K., Brady, R., Cravchik, A., Morozov, P., Rzhetsky, A., Zuker, C., & Axel, R. (2001) · Cell · doi:10.1016/s0092-8674(01)00263-x · Cited by 720
Identification of Candidate Drosophila Olfactory Receptors from Genomic DNA Sequence
Gao, Q., & Chess, A. (1999) · Genomics · doi:10.1006/geno.1999.5894 · Cited by 498
Sexual attraction in the silkworm moth: structure of the pheromone-binding-protein–bombykol complex
Sandler, B. H., Nikonova, L., Leal, W. S., & Clardy, J. (2000) · Chemistry & Biology · doi:10.1016/s1074-5521(00)00078-8 · Cited by 481
Seven-Transmembrane Proteins as Odorant and Chemosensory Receptors
Mombaerts, P. (1999) · Science · doi:10.1126/science.286.5440.707 · Cited by 450
Putative Drosophila pheromone-binding proteins expressed in a subregion of the olfactory system.
McKenna, M. P., Hekmat-Scafe, D. S., Gaines, P., & Carlson, J. R. (1994) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(17)34013-9 · Cited by 364
Self-citationPelosi, P. (1994) · Critical Reviews in Biochemistry and Molecular Biology · doi:10.3109/10409239409086801 · Cited by 361
Pikielny, C. W., Hasan, G., Rouyer, F., & Rosbash, M. (1994) · Neuron · doi:10.1016/0896-6273(94)90150-3 · Cited by 353
The FlyBase Database of the Drosophila Genome Projects and community literature
The FlyBase Consortium (1999) · Nucleic Acids Research · doi:10.1093/nar/27.1.85 · Cited by 325
Galindo, K., & Smith, D. P. (2001) · Genetics · doi:10.1093/genetics/159.3.1059 · Cited by 289
Mammalian odorant binding proteins
Tegoni, M., Pelosi, P., Vincent, F., Spinelli, S., Campanacci, V., Grolli, S., Ramoni, R., & Cambillau, C. (2000) · Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology · doi:10.1016/s0167-4838(00)00167-9 · Cited by 281
LUSH Odorant-Binding Protein Mediates Chemosensory Responses to Alcohols in Drosophila melanogaster
Kim, M.-S., Repp, A., & Smith, D. P. (1998) · Genetics · doi:10.1093/genetics/150.2.711 · Cited by 251
Charlab, R., Valenzuela, J. G., Rowton, E. D., & Ribeiro, J. M. C. (1999) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.96.26.15155 · Cited by 236
Robertson, H. M., Martos, R., Sears, C. R., Todres, E. Z., Walden, K. K. O., & Nardi, J. B. (1999) · Insect Molecular Biology · doi:10.1046/j.1365-2583.1999.00146.x · Cited by 230
A question of size: the eukaryotic proteome and the problems in defining it
Harrison, P. M. (2002) · Nucleic Acids Research · doi:10.1093/nar/30.5.1083 · Cited by 222
Binding proteins from the antennae of Bombyx mori
Krieger, J., von Nickisch-Rosenegk, E., Mameli, M., Pelosi, P., & Breer, H. (1996) · Insect Biochemistry and Molecular Biology · doi:10.1016/0965-1748(95)00096-8 · Cited by 219
Genome Annotation Assessment in Drosophila melanogaster
Reese, M. G., Hartzell, G., Harris, N. L., Ohler, U., Abril, J. F., & Lewis, S. E. (2000) · Genome Research · doi:10.1101/gr.10.4.483 · Cited by 203
Vogt, R. G. (1999) · Chemical Senses · doi:10.1093/chemse/24.5.481 · Cited by 193
Robertson, H. M. (2000) · Genome Research · doi:10.1101/gr.10.2.192 · Cited by 147
Danty, E., Briand, L. V., Michard‐Vanhée, C., Perez, V., Arnold, G., Gaudemer, O., Huet, D., Huet, J., Ouali, C., Masson, C., et al. (1999) · Journal of Neuroscience · doi:10.1523/jneurosci.19-17-07468.1999 · Cited by 114
Coexpression of Two Odorant-Binding Protein Homologs inDrosophila: Implications for Olfactory Coding
Hekmat‐Scafe, D. S., Steinbrecht, R. A., & Carlson, J. R. (1997) · Journal of Neuroscience · doi:10.1523/jneurosci.17-05-01616.1997 · Cited by 108
Self-citationThe Molecular Logic of Olfaction in Drosophila
Vosshall, L. B. (2001) · Chemical Senses · doi:10.1093/chemse/26.2.207 · Cited by 90
Genetic Manipulation of the Odor-Evoked Distributed Neural Activity in the Drosophila Mushroom Body
Wang, Y., Wright, N. J. D., Guo, H.-F., Xie, Z., Svoboda, K., Malinow, R., Smith, D. P., & Zhong, Y. (2001) · Neuron · doi:10.1016/s0896-6273(01)00196-9 · Cited by 89
The tetraspanin superfamily in insects
Todres, E. Z., Nardi, J. B., & Robertson, H. M. (2000) · Insect Molecular Biology · doi:10.1046/j.1365-2583.2000.00222.x · Cited by 85
Chemosensation: molecular mechanisms in worms and mammals
Prasad, B. C., & Reed, R. R. (1999) · Trends in Genetics · doi:10.1016/s0168-9525(99)01695-9 · Cited by 83
Odorants of Different Chemical Classes Interact with Distinct Odorant Binding Protein Subtypes
Löbel, D. (2002) · Chemical Senses · doi:10.1093/chemse/27.1.39 · Cited by 79
A Putative Lipophilic Stimulant Carrier Protein Commonly Found in the Taste and Olfactory Systems
Ozaki, M., Morisaki, K., Idei, W., Ozaki, K., & Tokunaga, F. (1995) · European Journal of Biochemistry · doi:10.1111/j.1432-1033.1995.0298i.x · Cited by 78
Pheromone binding proteins of the moth Mamestra brassicae: Specificity of ligand binding
Maı̈bèche, M., Sobrio, F., Delaunay, T., Lettéré, M., Dubroca, J., Jacquin‐Joly, E., & Meillour, P. N. (1997) · Insect Biochemistry and Molecular Biology · doi:10.1016/s0965-1748(96)00088-4 · Cited by 76
Park, S.-K., Shanbhag, S. R., Wang, Q., Hasan, G., Steinbrecht, R. A., & Pikielny, C. W. (2000) · Cell and Tissue Research · doi:10.1007/s004410000187 · Cited by 68
Paesen, G. C., & Happ, G. M. (1995) · Insect Biochemistry and Molecular Biology · doi:10.1016/0965-1748(94)00085-v · Cited by 66
Molecular Evolution of Odorant-Binding Protein Genes OS-E and OS-F in Drosophila
Hekmat‐Scafe, D. S., Dorit, R. L., & Carlson, J. R. (2000) · Genetics · doi:10.1093/genetics/155.1.117 · Cited by 65
Self-citationElements of the olfactory signaling pathways in insect antennae
Krieger, J., Mameli, M., & Breer, H. (1997) · Invertebrate Neuroscience · doi:10.1007/bf02480368 · Cited by 44
A Unified Nomenclature System for the Drosophila Odorant Receptors
(2000) · Cell · doi:10.1016/s0092-8674(00)00020-9 · Cited by 37
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Xu, P., Atkinson, R., Jones, D. N. M., & Smith, D. P. (2005) · Neuron · doi:10.1016/j.neuron.2004.12.031 · Cited by 521
Vieira, F. G., & Rozas, J. (2011) · Genome Biology and Evolution · doi:10.1093/gbe/evr033 · Cited by 502
Molecular evolution of the major chemosensory gene families in insects
Sánchez-Gracia, A., Vieira, F. G., & Rozas, J. (2009) · Heredity · doi:10.1038/hdy.2009.55 · Cited by 477
INSECT ODOR AND TASTE RECEPTORS
Hallem, E. A., Dahanukar, A., & Carlson, J. R. (2006) · Annual Review of Entomology · doi:10.1146/annurev.ento.51.051705.113646 · Cited by 477
Olfactory regulation of mosquito–host interactions
Zwiebel, L. J., & Takken, W. (2004) · Insect Biochemistry and Molecular Biology · doi:10.1016/j.ibmb.2004.03.017 · Cited by 320
Metadata
- Authors
- Hekmat-Scafe, D. S., Scafe, C. R., McKinney, A. J., & Tanouye, M. A.
- Venue
- Genome Research
- Publisher
- Cold Spring Harbor Laboratory
- Published
- 2002-09-01
- Volume
- 12
- Issue
- 9
- Pages
- 1357-1369
- ISSN
- 1088-9051 (ISSN-L)
- 1549-5469
- OpenAlex
- W2157665519
- Cited by
- 465
- References
- 45
- Type
- posted content
- Language
- en
- Open access
- green
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