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The Complete Genome Sequence of the Lactic Acid Bacterium Lactococcus lactis ssp. lactis IL1403

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Bolotin, A., Wincker, P., Mauger, S., Jaillon, O., Malarme, K., Weissenbach, J., Ehrlich, S. D., Sorokin, A.·2001·Genome Research

DOI 10.1101/gr.gr-1697rPMC PMC311110

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Abstract

Lactococcus lactis is a nonpathogenic AT-rich gram-positive bacterium closely related to the genus Streptococcus and is the most commonly used cheese starter. It is also the best-characterized lactic acid bacterium. We sequenced the genome of the laboratory strain IL1403, using a novel two-step strategy that comprises diagnostic sequencing of the entire genome and a shotgun polishing step. The genome contains 2,365,589 base pairs and encodes 2310 proteins, including 293 protein-coding genes belonging to six prophages and 43 insertion sequence (IS) elements. Nonrandom distribution of IS elements indicates that the chromosome of the sequenced strain may be a product of recent recombination between two closely related genomes. A complete set of late competence genes is present, indicating the ability of L. lactis to undergo DNA transformation. Genomic sequence revealed new possibilities for fermentation pathways and for aerobic respiration. It also indicated a horizontal transfer of genetic information from Lactococcus to gram-negative enteric bacteria of Salmonella-Escherichia group.

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Authors: Bolotin, A., Wincker, P., Mauger, S., Jaillon, O., Malarme, K., Weissenbach, J., Ehrlich, S. D., & Sorokin, A.
Affiliations: Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement (FR)
ORCID: Wincker, P.
Mauger, S.
Jaillon, O.
Ehrlich, S. D.
Sorokin, A.
Venue: Genome Research
Publisher: Cold Spring Harbor Laboratory
Published: 2001-04-11
Volume: 11
Issue: 5
Pages: 731-753
ISSN: 1088-9051 (ISSN-L)
DOI: 10.1101/gr.gr-1697r
PMC: PMC311110
OpenAlex: W2168772829
Cited by: 1,139
References: 54
Citations by year: 2026: 8 · 2025: 11 · 2024: 17 · 2023: 29 · 2022: 27 · 2021: 31 · 2020: 30 · 2019: 30 · 2018: 45 · 2017: 36 · 2016: 28 · 2015: 32 · 2014: 51 · 2013: 39 · 2012: 59
Type: posted content
Language: en
Open access: bronze
doi.org
Locations: Genome Research (publishedVersion)
PubMed Central (publishedVersion)
PubMed (publishedVersion)
HAL (submittedVersion)
HAL (submittedVersion, public-domain)
Topics: Life Sciences › Agricultural and Biological Sciences › Food Science › Probiotics and Fermented Foods
Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
Keywords: complete genome sequence, lactic acid bacteria, cheese starter cultures, prophages, insertion sequences, recombination, DNA transformation, fermentation pathways, aerobic respiration, horizontal gene transfer
MeSH terms: Amino Acids, Bacterial Proteins, Bacteriophages, Biological Transport, Active, Cell Wall, DNA Transposable Elements, Energy Metabolism, Enterobacteriaceae, Gene Expression Regulation, Multigene Family, Molecular Sequence Data, Nucleotides, Endopeptidases, Proviruses, RNA, Bacterial, Lactococcus lactis, Transformation, Genetic, Vitamins, Signal Transduction, Open Reading Frames, Genome, Bacterial, Sequence Analysis, DNA, Lactic Acid, Gene Transfer, Horizontal

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The Complete Genome Sequence of the Lactic Acid Bacterium Lactococcus lactis ssp. lactis IL1403

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