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The Complete Genome Sequence of the Lactic Acid Bacterium Lactococcus lactis ssp. lactis IL1403
Open accessAbstract
Lactococcus lactis is a nonpathogenic AT-rich gram-positive bacterium closely related to the genus Streptococcus and is the most commonly used cheese starter. It is also the best-characterized lactic acid bacterium. We sequenced the genome of the laboratory strain IL1403, using a novel two-step strategy that comprises diagnostic sequencing of the entire genome and a shotgun polishing step. The genome contains 2,365,589 base pairs and encodes 2310 proteins, including 293 protein-coding genes belonging to six prophages and 43 insertion sequence (IS) elements. Nonrandom distribution of IS elements indicates that the chromosome of the sequenced strain may be a product of recent recombination between two closely related genomes. A complete set of late competence genes is present, indicating the ability of L. lactis to undergo DNA transformation. Genomic sequence revealed new possibilities for fermentation pathways and for aerobic respiration. It also indicated a horizontal transfer of genetic information from Lactococcus to gram-negative enteric bacteria of Salmonella-Escherichia group.
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Metadata
- Authors
- Bolotin, A., Wincker, P., Mauger, S., Jaillon, O., Malarme, K., Weissenbach, J., Ehrlich, S. D., & Sorokin, A.
- Affiliations
- Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement (FR)
- Venue
- Genome Research
- Publisher
- Cold Spring Harbor Laboratory
- Published
- 2001-04-11
- Volume
- 11
- Issue
- 5
- Pages
- 731-753
- ISSN
- 1088-9051 (ISSN-L)
- PMC
- PMC311110
- OpenAlex
- W2168772829
- Cited by
- 1,139
- References
- 54
- Citations by year
- 2026: 8 · 2025: 11 · 2024: 17 · 2023: 29 · 2022: 27 · 2021: 31 · 2020: 30 · 2019: 30 · 2018: 45 · 2017: 36 · 2016: 28 · 2015: 32 · 2014: 51 · 2013: 39 · 2012: 59
- Type
- posted content
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Genome Research (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- HAL (submittedVersion)
- HAL (submittedVersion, public-domain)
- Topics
- Life Sciences › Agricultural and Biological Sciences › Food Science › Probiotics and Fermented Foods
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Keywords
- complete genome sequence, lactic acid bacteria, cheese starter cultures, prophages, insertion sequences, recombination, DNA transformation, fermentation pathways, aerobic respiration, horizontal gene transfer
- MeSH terms
- Amino Acids, Bacterial Proteins, Bacteriophages, Biological Transport, Active, Cell Wall, DNA Transposable Elements, Energy Metabolism, Enterobacteriaceae, Gene Expression Regulation, Multigene Family, Molecular Sequence Data, Nucleotides, Endopeptidases, Proviruses, RNA, Bacterial, Lactococcus lactis, Transformation, Genetic, Vitamins, Signal Transduction, Open Reading Frames, Genome, Bacterial, Sequence Analysis, DNA, Lactic Acid, Gene Transfer, Horizontal
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