Probing biological light-harvesting phenomena by optical cavities
Open accessAbstract
We propose a driven optical cavity quantum electrodynamics (QED) setup aimed at directly probing energy transport dynamics in photosynthetic biomolecules. We show that detailed information concerning energy transfer paths and delocalization of exciton states can be inferred (and exciton energies estimated) from the statistical properties of the emitted photons. This approach provides us with a spectroscopic tool to interrogate biological systems in terms of quantum optical phenomena which have usually been studied in solid-state or atomic systems (e.g., semiconductor quantum dots and trapped atoms) and which are now extended to a broader range of spectroscopy experiments.
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Non-equilibrium exchanges between system and environment can have considerable influence on the system dynamics.
“This and other non-equilibrium exchanges between system and environment can have considerable influence on the system dynamics [28-35], influence the direction of energy transfer [28] and may even lead to the generation of long-lived quantum coherence in the system [28, 36-38].”
From Vibrations, quanta and biology (2013) · cites this paper as [34]
Inclusion of significant coupling of electronic motion to long-lived vibrational modes is capable of explaining the long-lived coherences observed in ultrafast 2-D spectroscopy on photosynthetic complexes.
“In the following we will show that the inclusion of significant coupling of electronic motion to long-lived vibrational modes [28, 34] are capable of explaining the observations [36, 37]”
From Vibrations, quanta and biology (2013) · cites this paper as [34]
The physically important relaxation pathway between sites 1 and 3 is mediated by pigments spectrally and spatially positioned by the protein to efficiently sample the spectral function of the protein's fluctuations.
“Indeed, it was found that the physically important relaxation pathway between sites 1 and 3 is mediated by pigments which are spectrally and spatially positioned by the protein to efficiently sample the spectral function of the proteins fluctuations [34, 61].”
From Vibrations, quanta and biology (2013) · cites this paper as [34]
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Cites
Optical Coherence and Quantum Optics
Mandel, L., & Wolf, E. (1995) · doi:10.1017/cbo9781139644105 · Cited by 8,356 · see citing works
Evidence for wavelike energy transfer through quantum coherence in photosynthetic systems
Engel, G. S., Calhoun, T. R., Read, E. L., Ahn, T.-K., Mančal, T., Cheng, Y.-C., Blankenship, R. E., & Fleming, G. R. (2007) · Nature · doi:10.1038/nature05678 · Cited by 3,315 · see citing works
Bose–Einstein condensation of exciton polaritons
Kasprzak, J., Richard, M., Kundermann, S., Baas, A., Jeambrun, P., Keeling, J., Marchetti, F. M., Szymańska, M. H., André, R., Staehli, J. L., et al. (2006) · Nature · doi:10.1038/nature05131 · Cited by 3,246 · see citing works
r, L. M. (1966) · Nuclear Physics · doi:10.1016/0029-5582(66)90509-8 · Cited by 2,522 · see citing works
Coherently wired light-harvesting in photosynthetic marine algae at ambient temperature
Collini, E., Wong, C. Y., Wilk, K. E., Curmi, P. M. G., Brumer, P., & Scholes, G. D. (2010) · Nature · doi:10.1038/nature08811 · Cited by 1,649 · see citing works
Logarithmic Negativity: A Full Entanglement Monotone That is not Convex
Plenio, M. B. (2005) · Physical Review Letters · doi:10.1103/physrevlett.95.090503 · Cited by 1,530 · see citing works
Self-citationExciton-polariton Bose-Einstein condensation
Deng, H., Haug, H., & Yamamoto, Y. (2010) · Reviews of Modern Physics · doi:10.1103/revmodphys.82.1489 · Cited by 1,505 · see citing works
Environment-assisted quantum walks in photosynthetic energy transfer
Mohseni, M., Rebentrost, P., Lloyd, S., & Aspuru-Guzik, A. (2008) · The Journal of Chemical Physics · doi:10.1063/1.3002335 · Cited by 1,189 · see citing works
Self-citationLabel-Free, Single-Molecule Detection with Optical Microcavities
Armani, A. M., Kulkarni, R. P., Fraser, S. E., Flagan, R. C., & Vahala, K. J. (2007) · Science · doi:10.1126/science.1145002 · Cited by 1,139 · see citing works
Long-lived quantum coherence in photosynthetic complexes at physiological temperature
Panitchayangkoon, G., Hayes, D., Fransted, K. A., Caram, J. R., Harel, E., Wen, J., Blankenship, R. E., & Engel, G. S. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1005484107 · Cited by 1,072 · see citing works
Coherence Dynamics in Photosynthesis: Protein Protection of Excitonic Coherence
Lee, H., Cheng, Y., & Fleming, G. R. (2007) · Science · doi:10.1126/science.1142188 · Cited by 1,060 · see citing works
Dephasing-assisted transport: quantum networks and biomolecules
Plenio, M. B., & Huelga, S. F. (2008) · New Journal of Physics · doi:10.1088/1367-2630/10/11/113019 · Cited by 1,002 · see citing works
Self-citationVacuum Rabi splitting in semiconductors
Khitrova, G., Gibbs, H. M., Kira, M., Koch, S. W., & Scherer, A. (2006) · Nature Physics · doi:10.1038/nphys227 · Cited by 979 · see citing works
Strongly interacting polaritons in coupled arrays of cavities
Hartmann, M. J., Brandão, F. G. S. L., & Plenio, M. B. (2006) · Nature Physics · doi:10.1038/nphys462 · Cited by 961 · see citing works
Self-citationRoom-Temperature Polariton Lasing in an Organic Single-Crystal Microcavity
Kéna-Cohen, S., & Forrest, S. R. (2010) · Nature Photonics · doi:10.1038/nphoton.2010.86 · Cited by 942 · see citing works
Theoretical examination of quantum coherence in a photosynthetic system at physiological temperature
Ishizaki, A., & Fleming, G. R. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0908989106 · Cited by 891 · see citing works
Environment-assisted quantum transport
Rebentrost, P., Mohseni, M., Kassal, I., Lloyd, S., & Aspuru-Guzik, A. (2009) · New Journal of Physics · doi:10.1088/1367-2630/11/3/033003 · Cited by 817 · see citing works
Self-citationQuantum phase transitions of light
Greentree, A. D., Tahan, C., Cole, J. H., & Hollenberg, L. C. L. (2006) · Nature Physics · doi:10.1038/nphys466 · Cited by 788 · see citing works
How Proteins Trigger Excitation Energy Transfer in the FMO Complex of Green Sulfur Bacteria
Adolphs, J., & Renger, T. (2006) · Biophysical Journal · doi:10.1529/biophysj.105.079483 · Cited by 696 · see citing works
Cavity Quantum Electrodynamics: Coherence in Context
Mabuchi, H., & Doherty, A. C. (2002) · Science · doi:10.1126/science.1078446 · Cited by 693 · see citing works
Caruso, F., Chin, A. W., Datta, A., Huelga, S. F., & Plenio, M. B. (2009) · The Journal of Chemical Physics · doi:10.1063/1.3223548 · Cited by 655 · see citing works
Self-citationAngelakis, D. G., Santos, M. F., & Bose, S. (2007) · Physical Review A · doi:10.1103/physreva.76.031805 · Cited by 565 · see citing works
Environment-Assisted Quantum Transport
Rebentrost, P., Mohseni, M., Kassal, I., Lloyd, S., & Aspuru‐Guzik, A. (2008) · Digital Access to Scholarship at Harvard (DASH) (Harvard University) · Cited by 512 · see citing works
Self-citationAn exactly solvable model for coherent and incoherent exciton motion
Haken, H., & Strobl, G. (1973) · Zeitschrift für Physik A Hadrons and Nuclei · doi:10.1007/bf01399723 · Cited by 482 · see citing works
Efficient Simulation of Strong System-Environment Interactions
Prior, J., Chin, A. W., Huelga, S. F., & Plenio, M. B. (2010) · Physical Review Letters · doi:10.1103/physrevlett.105.050404 · Cited by 480 · see citing works
Self-citationProposal for Teleportation of an Atomic State via Cavity Decay
Bose, S., Knight, P. L., Plenio, M. B., & Vedral, V. (1999) · Physical Review Letters · doi:10.1103/physrevlett.83.5158 · Cited by 463 · see citing works
Self-citationA fiber Fabry–Perot cavity with high finesse
Hunger, D., Steinmetz, T., Colombe, Y., Deutsch, C., Hänsch, T. W., & Reichel, J. (2010) · New Journal of Physics · doi:10.1088/1367-2630/12/6/065038 · Cited by 439 · see citing works
Exciton Analysis in 2D Electronic Spectroscopy
Cho, M., Vaswani, H. M., Brixner, T., Stenger, J., & Fleming, G. R. (2005) · The Journal of Physical Chemistry B · doi:10.1021/jp050788d · Cited by 428 · see citing works
Ultrafast excitation energy transfer dynamics in photosynthetic pigment–protein complexes
Renger, T., May, V., & Kühn, O. (2001) · Physics Reports · doi:10.1016/s0370-1573(00)00078-8 · Cited by 413 · see citing works
A fiber Fabry-Perot cavity with high finessePreprint
Hunger, D., Steinmetz, T., Colombe, Y., Deutsch, C., Hänsch, T. W., & Reichel, J. (2010) · Cited by 389 · see citing works
Noise-assisted energy transfer in quantum networks and light-harvesting complexes
Chin, A. W., Datta, A., Caruso, F., Huelga, S. F., & Plenio, M. B. (2010) · New Journal of Physics · doi:10.1088/1367-2630/12/6/065002 · Cited by 338 · see citing works
Self-citationEfficiency of energy transfer in a light-harvesting system under quantum coherence
Olaya-Castro, A., Lee, C. F., Olsen, F. F., & Johnson, N. F. (2008) · Physical Review B · doi:10.1103/physrevb.78.085115 · Cited by 313 · see citing works
Tronrud, D. E., Wen, J., Gay, L. S., & Blankenship, R. E. (2009) · Photosynthesis Research · doi:10.1007/s11120-009-9430-6 · Cited by 308 · see citing works
Robust Creation of Entanglement between Ions in Spatially Separate Cavities
Browne, D. E., Plenio, M. B., & Huelga, S. F. (2003) · Physical Review Letters · doi:10.1103/physrevlett.91.067901 · Cited by 234 · see citing works
Self-citationEntanglement and entangling power of the dynamics in light-harvesting complexes
Caruso, F., Chin, A. W., Datta, A., Huelga, S. F., & Plenio, M. B. (2010) · Physical Review A · doi:10.1103/physreva.81.062346 · Cited by 223 · see citing works
Self-citationExcitons in Photosynthetic Purple Bacteria: Wavelike Motion or Incoherent Hopping?
Chachisvilis, M., Kühn, O., Pullerits, T., & Sundström, V. (1997) · The Journal of Physical Chemistry B · doi:10.1021/jp963360a · Cited by 219 · see citing works
Atomistic Study of the Long-Lived Quantum Coherences in the Fenna-Matthews-Olson Complex
Shim, S., Rebentrost, P., Valleau, S., & Aspuru-Guzik, A. (2012) · Biophysical Journal · doi:10.1016/j.bpj.2011.12.021 · Cited by 219 · see citing works
Self-citationEnhanced quantum entanglement in the non-Markovian dynamics of biomolecular excitons
Thorwart, M., Eckel, J., Reina, J. H., Nalbach, P., & Weiss, S. (2009) · Chemical Physics Letters · doi:10.1016/j.cplett.2009.07.053 · Cited by 191 · see citing works
Calculation of pigment transition energies in the FMO protein
Adolphs, J., Müh, F., Madjet, M. E., & Renger, T. (2007) · Photosynthesis Research · doi:10.1007/s11120-007-9248-z · Cited by 189 · see citing works
Zhu, J., Kais, S., Rebentrost, P., & Aspuru-Guzik, A. (2011) · The Journal of Physical Chemistry B · doi:10.1021/jp109559p · Cited by 141 · see citing works
Self-citationRevisiting the optical properties of the FMO protein
Milder, M. T. W., Brüggemann, B., van Grondelle, R., & Herek, J. L. (2010) · Photosynthesis Research · doi:10.1007/s11120-010-9540-1 · Cited by 139 · see citing works
Cavity-Based Single Atom Preparation and High-Fidelity Hyperfine State Readout
Gehr, R., Volz, J., Dubois, G., Steinmetz, T., Colombe, Y., Lev, B., Long, R., Estève, J., & Reichel, J. (2010) · Physical Review Letters · doi:10.1103/physrevlett.104.203602 · Cited by 137 · see citing works
Non-Markovian quantum jumps in excitonic energy transfer
Rebentrost, P., Chakraborty, R., & Aspuru‐Guzik, A. (2009) · The Journal of Chemical Physics · doi:10.1063/1.3259838 · Cited by 128 · see citing works
Self-citationRebentrost, P., & Aspuru-Guzik, A. (2011) · The Journal of Chemical Physics · doi:10.1063/1.3563617 · Cited by 102 · see citing works
Self-citationObservation of squeezed light from one atom excited with two photons
Ourjoumtsev, A., Kubanek, A., Koch, M., Sames, C., Pinkse, P. W. H., Rempe, G., & Murr, K. (2011) · Nature · doi:10.1038/nature10170 · Cited by 101 · see citing works
Zhu, J., Kais, S., Rebentrost, P., & Aspuru‐Guzik, A. (2011) · Digital Access to Scholarship at Harvard (DASH) (Harvard University) · Cited by 98 · see citing works
Self-citationNon-Markovian Quantum Jumps in Excitonic Energy Transfer
Rebentrost, P., Chakraborty, R., & Aspuru‐Guzik, A. (2009) · Digital Access to Scholarship at Harvard (DASH) (Harvard University) · Cited by 93 · see citing works
Self-citationMercer, I. P., El-Taha, Y. C., Kajumba, N., Marangos, J. P., Tisch, J. W. G., Gabrielsen, M., Cogdell, R. J., Springate, E., & Turcu, E. (2009) · Physical Review Letters · doi:10.1103/physrevlett.102.057402 · Cited by 90 · see citing works
Noise-Enhanced Classical and Quantum Capacities in Communication Networks
Caruso, F., Huelga, S. F., & Plenio, M. B. (2010) · Physical Review Letters · doi:10.1103/physrevlett.105.190501 · Cited by 79 · see citing works
Self-citationQuantum state and process tomography of energy transfer systems via ultrafast spectroscopy
Yuen-Zhou, J. Y., Krich, J. J., Mohseni, M., & Aspuru‐Guzik, A. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1110642108 · Cited by 75 · see citing works
Self-citationThree-Photon Correlations in a Strongly Driven Atom-Cavity System
Koch, M., Sames, C., Balbach, M., Chibani, H., Kubanek, A., Murr, K., Wilk, T., & Rempe, G. (2011) · Physical Review Letters · doi:10.1103/physrevlett.107.023601 · Cited by 63 · see citing works
Liquid-Phase and Evanescent-Wave Cavity Ring-Down Spectroscopy in Analytical Chemistry
van der Sneppen, L., Ariese, F., Gooijer, C., et al. (2009) · Annual Review of Analytical Chemistry · doi:10.1146/annurev-anchem-060908-155301 · Cited by 58 · see citing works
Dynamics of electronic dephasing in the Fenna–Matthews–Olson complex
Hayes, D., Panitchayangkoon, G., Fransted, K. A., Caram, J. R., Wen, J., Freed, K. F., & Engel, G. S. (2010) · New Journal of Physics · doi:10.1088/1367-2630/12/6/065042 · Cited by 55 · see citing works
Growing-In of Optical Coherence in the FMO Antenna Complexes
Prokhorenko, V. I., Holzwarth, A. R., Nowak, F. R., & Aartsma, T. J. (2002) · The Journal of Physical Chemistry B · doi:10.1021/jp025758e · Cited by 38 · see citing works
Probing of single quantum dot dressed states via an off-resonant cavity
Majumdar, A., Papageorge, A. T., Kim, E. D., et al. (2011) · Physical Review B · doi:10.1103/physrevb.84.085310 · Cited by 30 · see citing works
Finesse and sensitivity gain in cavity-enhanced absorption spectroscopy of biomolecules in solution
McGarvey, T., Conjusteau, A., & Mabuchi, H. (2006) · Optics Express · doi:10.1364/oe.14.010441 · Cited by 28 · see citing works
A novel class of coherent light emitters: polariton lasers
Butté, R., & Grandjean, N. (2010) · Semiconductor Science and Technology · doi:10.1088/0268-1242/26/1/014030 · Cited by 26 · see citing works
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Almeida, J., Prior, J., & Plenio, M. B. (2012) · The Journal of Physical Chemistry Letters · doi:10.1021/jz3009369 · Cited by 24 · see citing works
Self-citation
- Authors
- Caruso, F., Saikin, S. K., Solano, E., Huelga, S. F., Aspuru-Guzik, A., & Plenio, M. B.
- Affiliations
- European Laboratory for Non-Linear Spectroscopy (IT)
- Harvard University (US)
- Ikerbasque (ES)
- Universität Ulm (DE)
- Venue
- Physical Review B
- Publisher
- American Physical Society (APS)
- Published
- 2012-03-20
- Volume
- 85
- Issue
- 12
- ISSN
- 1098-0121 (ISSN-L)
- 1550-235X
- OpenAlex
- W2041023047
- Cited by
- 34
- References
- 57
- Citations by year
- 2024: 2 · 2023: 3 · 2020: 2 · 2019: 3 · 2018: 6 · 2017: 1 · 2016: 6 · 2014: 1 · 2013: 3 · 2012: 7
- FWCI
- 1.82
- Type
- journal article
- Language
- en
- Open access
- green
- arxiv.org
- Locations
- Physical Review B (publishedVersion)
- arXiv (Cornell University) (submittedVersion)
- Digital Access to Scholarship at Harvard (DASH) (Harvard University) (submittedVersion, cc-by)
- Florence Research (University of Florence) (submittedVersion)
- arXiv (Cornell University)
- Topics
- Physical Sciences › Physics and Astronomy › Atomic and Molecular Physics, and Optics › Strong Light-Matter Interactions
- Physical Sciences › Physics and Astronomy › Atomic and Molecular Physics, and Optics › Spectroscopy and Quantum Chemical Studies
- Physical Sciences › Physics and Astronomy › Atomic and Molecular Physics, and Optics › Quantum optics and atomic interactions
- Keywords
- photosynthetic light harvesting, exciton transfer, exciton delocalization, photon statistics
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