Cited by 330Medical Image Segmentation TechniquesBrain Tumor Detection and ClassificationMedical Imaging and Analysis

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Deep neural networks for anatomical brain segmentation

de Brebisson, Alexandre, Montana, Giovanni·2015·2015 IEEE Conference on Computer Vision and Pattern Recognition Workshops (CVPRW)

DOI 10.1109/cvprw.2015.7301312

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Abstract

We present a novel approach to automatically segment magnetic resonance (MR) images of the human brain into anatomical regions. Our methodology is based on a deep artificial neural network that assigns each voxel in an MR image of the brain to its corresponding anatomical region. The inputs of the network capture information at different scales around the voxel of interest: 3D and orthogonal 2D intensity patches capture a local spatial context while downscaled large 2D orthogonal patches and distances to the regional centroids enforce global spatial consistency. Contrary to commonly used segmentation methods, our technique does not require any non-linear registration of the MR images. To benchmark our model, we used the dataset provided for the MICCAI 2012 challenge on multi-atlas labelling, which consists of 35 manually segmented MR images of the brain. We obtained competitive results (mean dice coefficient 0.725, error rate 0.163) showing the potential of our approach. To our knowledge, our technique is the first to tackle the anatomical segmentation of the whole brain using deep neural networks.

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Authors: de Brebisson, A., & Montana, G.
Affiliations: St Thomas' Hospital (GB)
ORCID: Montana, Giovanni
Venue: 2015 IEEE Conference on Computer Vision and Pattern Recognition Workshops (CVPRW)
Publisher: IEEE
Published: 2015-06
Pages: 20-28
DOI: 10.1109/cvprw.2015.7301312
OpenAlex: W1910109443
Cited by: 330
References: 21
Citations by year: 2026: 2 · 2025: 7 · 2024: 15 · 2023: 24 · 2022: 37 · 2021: 39 · 2020: 49 · 2019: 55 · 2018: 43 · 2017: 45 · 2016: 12 · 2015: 1
FWCI: 13.81
Type: conference paper
Language: en
Open access: closed
Locations: IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops (CVPRW) (publishedVersion)
Research Portal (King's College London) (submittedVersion)
Topics: Physical Sciences › Computer Science › Computer Vision and Pattern Recognition › Medical Image Segmentation Techniques
Physical Sciences › Computer Science › Computer Vision and Pattern Recognition › Brain Tumor Detection and Classification
Physical Sciences › Engineering › Biomedical Engineering › Medical Imaging and Analysis
Keywords: brain segmentation, magnetic resonance imaging, deep neural network, spatial context, multi-scale features

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Deep neural networks for anatomical brain segmentation

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