The DOI matches its Crossref record; 72 of the 72 references it cites were found in a registry or an index.
Meconium microbiota types dominated by lactic acid or enteric bacteria are differentially associated with maternal eczema and respiratory problems in infants
Abstract
Summary: Background: Culture‐dependent methods have shown that meconium, the newborn's first intestinal discharge, is not sterile, but the diversity of bacteria present in this material needs to be further characterized by means of more sensitive molecular techniques. Objective: Our aims were to characterize molecularly the meconium microbiota in term infants, to assess whether it contributes to the future microbiota of the infants’ gastrointestinal tract, and to evaluate how it relates to lifestyle variables and atopy‐related conditions. Methods: We applied high‐throughput pyrosequencing of the 16S rRNA gene to study the meconium microbiota in twenty term newborns from a Spanish birth cohort. For comparison, we characterized the microbiota in fecal samples from seven pregnant women days before delivery and in two series of infant samples spanning the first seven months of life. We also compared our data with vaginal and skin microbiota characterized in independent studies. Different types of meconium microbiota were defined based on taxonomic composition and abundance and their associations with different factors were statistically evaluated. Results: The meconium microbiota differs from those in adult feces, vagina and skin, but resembles that of fecal samples from young infants. Meconium samples clustered into two types with different bacterial diversity, richness and composition. One of the types was less diverse, dominated by enteric bacteria and associated with a history of atopic eczema in the mother (P = 0.038), whereas the second type was dominated by lactic acid bacteria and associated with respiratory problems in the infant (P = 0.040). Conclusions & Clinical Relevance: Our findings suggest that the meconium microbiota has an intrauterine origin and participates in gut colonization. Although based on a small population sample, our association analyses also suggest that the type of bacteria detected in meconium is influenced by maternal factors and may have consequences for childhood health.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
R: A Language and Environment for Statistical Computing
R Core Team (2025) · doi:10.32614/r.manuals · Cited by 352,181
A Mathematical Theory of Communication
Shannon, C. E. (1948) · Bell System Technical Journal · doi:10.1002/j.1538-7305.1948.tb01338.x · Cited by 88,486
Schloss, P. D., Westcott, S. L., Ryabin, T., Hall, J. R., Hartmann, M., Hollister, E. B., Lesniewski, R. A., Oakley, B. B., Parks, D. H., Robinson, C. J., et al. (2009) · Applied and Environmental Microbiology · doi:10.1128/aem.01541-09 · Cited by 19,549
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
Li, W., & Godzik, A. (2006) · Bioinformatics · doi:10.1093/bioinformatics/btl158 · Cited by 11,410
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
DeSantis, T. Z., Hugenholtz, P., Larsen, N., Rojas, M., Brodie, E. L., Keller, K., Huber, T., Dalevi, D., Hu, P., & Andersen, G. L. (2006) · Applied and Environmental Microbiology · doi:10.1128/aem.03006-05 · Cited by 10,891
VEGAN, a package of R functions for community ecology
Dixon, P. (2003) · Journal of Vegetation Science · doi:10.1111/j.1654-1103.2003.tb02228.x · Cited by 6,824
FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
Price, M. N., Dehal, P. S., & Arkin, A. P. (2009) · Molecular Biology and Evolution · doi:10.1093/molbev/msp077 · Cited by 5,602
Diagnostic features of atopic dermatitis
Hanifin, J. M., & Rajka, G. (1980) · Acta Dermato-Venereologica · doi:10.2340/00015555924447 · Cited by 5,086
Dominguez-Bello, M. G., Costello, E. K., Contreras, M., Magris, M., Hidalgo, G., Fierer, N., & Knight, R. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1002601107 · Cited by 4,774
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
Cole, J. R., Wang, Q., Cardenas, E., Fish, J., Chai, B., Farris, R. J., Kulam-Syed-Mohideen, A. S., McGarrell, D. M., Marsh, T., Garrity, G. M., et al. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkn879 · Cited by 4,762
Nonparametric estimation of the number of classes in a population
Chao, A. (1984) · Scandinavian Journal of Statistics · Cited by 4,265
Bacterial Community Variation in Human Body Habitats Across Space and Time
Costello, E. K., Lauber, C. L., Hamady, M., Fierer, N., Gordon, J. I., & Knight, R. (2009) · Science · doi:10.1126/science.1177486 · Cited by 3,231
Distinct patterns of neonatal gut microflora in infants in whom atopy was and was not developing
Kalliomäki, M., Kirjavainen, P., Eerola, E., Kero, P., Salminen, S., & Isolauri, E. (2001) · Journal of Allergy and Clinical Immunology · doi:10.1067/mai.2001.111237 · Cited by 1,255
Allergy development and the intestinal microflora during the first year of life
Björkstén, B., Sepp, E., Julge, K., Voor, T., & Mikelsaar, M. (2001) · Journal of Allergy and Clinical Immunology · doi:10.1067/mai.2001.118130 · Cited by 1,203
Hamady, M., Lozupone, C., & Knight, R. (2010) · The ISME Journal · doi:10.1038/ismej.2009.97 · Cited by 1,099
Is meconium from healthy newborns actually sterile?
Jiménez, E., Marín, M. L., Martín, R., Odriozola, J. M., Olivares, M., Xaus, J., Fernández, L., & Rodríguez, J. M. (2008) · Research in Microbiology · doi:10.1016/j.resmic.2007.12.007 · Cited by 942
Cabrera-Rubio, R., Collado, M. C., Laitinen, K., Salminen, S., Isolauri, E., & Mira, A. (2012) · The American Journal of Clinical Nutrition · doi:10.3945/ajcn.112.037382 · Cited by 886
Penders, J., Thijs, C., van den Brandt, P. A., Kummeling, I., Snijders, B., Stelma, F., Adams, H., van Ree, R., & Stobberingh, E. E. (2007) · Gut · doi:10.1136/gut.2006.100164 · Cited by 844
Low diversity of the gut microbiota in infants with atopic eczema
Abrahamsson, T. R., Jakobsson, H. E., Andersson, A. F., Björkstén, B., Engstrand, L., & Jenmalm, M. C. (2012) · Journal of Allergy and Clinical Immunology · doi:10.1016/j.jaci.2011.10.025 · Cited by 815
DiGiulio, D. B., Romero, R., Amogan, H. P., Kusanovic, J. P., Bik, E. M., Gotsch, F., Kim, C. J., Erez, O., Edwin, S., & Relman, D. A. (2008) · PLoS ONE · doi:10.1371/journal.pone.0003056 · Cited by 798
Bisgaard, H., Li, N., Bonnelykke, K., Chawes, B. L. K., Skov, T., Paludan-Müller, G., Stokholm, J., Smith, B., & Krogfelt, K. A. (2011) · Journal of Allergy and Clinical Immunology · doi:10.1016/j.jaci.2011.04.060 · Cited by 786
A Metagenomic Approach to Characterization of the Vaginal Microbiome Signature in Pregnancy
Aagaard, K., Riehle, K., Ma, J., Segata, N., Mistretta, T.-A., Coarfa, C., Raza, S., Rosenbaum, S., Van den Veyver, I., Milosavljevic, A., et al. (2012) · PLoS ONE · doi:10.1371/journal.pone.0036466 · Cited by 709
Jiménez, E., Fernández, L., Marín, M. L., Martín, R., Odriozola, J. M., Nueno-Palop, C., Narbad, A., Olivares, M., Xaus, J., & Rodríguez, J. M. (2005) · Current Microbiology · doi:10.1007/s00284-005-0020-3 · Cited by 681
Bacterial Imprinting of the Neonatal Immune System: Lessons From Maternal Cells?
Perez, P. F., Doré, J., Leclerc, M., Levenez, F., Benyacoub, J., Serrant, P., Segura-Roggero, I., Schiffrin, E. J., & Donnet-Hughes, A. (2007) · Pediatrics · doi:10.1542/peds.2006-1649 · Cited by 673
Ege, M. J., Bieli, C., Frei, R., van Strien, R. T., Riedler, J., Üblagger, E., Schram-Bijkerk, D., Brunekreef, B., van Hage, M., Scheynius, A., et al. (2006) · Journal of Allergy and Clinical Immunology · doi:10.1016/j.jaci.2005.12.1307 · Cited by 474
Bezirtzoglou, E., Tsiotsias, A., & Welling, G. W. (2011) · Anaerobe · doi:10.1016/j.anaerobe.2011.03.009 · Cited by 449
Reduced diversity in the early fecal microbiota of infants with atopic eczema
Wang, M., Karlsson, C., Olsson, C., Adlerberth, I., Wold, A. E., Strachan, D. P., Martricardi, P. M., Åberg, N., Perkin, M. R., Tripodi, S., et al. (2008) · Journal of Allergy and Clinical Immunology · doi:10.1016/j.jaci.2007.09.011 · Cited by 436
Maternal farm exposure modulates neonatal immune mechanisms through regulatory T cells
Schaub, B., Liu, J., Höppler, S., Schleich, I., Huehn, J., Olek, S., Wieczorek, G., Illi, S., & von Mutius, E. (2009) · Journal of Allergy and Clinical Immunology · doi:10.1016/j.jaci.2009.01.056 · Cited by 431
Intestinal microflora of Estonian and Swedish infants
Sepp, E., Julge, K., Vasar, M., Naaber, P., Björksten, B., & Mikelsaar, M. (1997) · Acta Paediatrica · doi:10.1111/j.1651-2227.1997.tb15178.x · Cited by 416
Differences in fecal microflora between patients with atopic dermatitis and healthy control subjects
Watanabe, S., Narisawa, Y., Arase, S., Okamatsu, H., Ikenaga, T., Tajiri, Y., & Kumemura, M. (2003) · Journal of Allergy and Clinical Immunology · doi:10.1067/mai.2003.105 · Cited by 392
Altered early infant gut microbiota in children developing allergy up to 5 years of age
Sjögren, Y. M., Jenmalm, M. C., Böttcher, M. F., Björkstén, B., & Sverremark‐Ekström, E. (2009) · Clinical & Experimental Allergy · doi:10.1111/j.1365-2222.2008.03156.x · Cited by 378
Intestinal Microbial Ecology in Premature Infants Assessed with Non–Culture-Based Techniques
Mshvildadze, M., Neu, J., Shuster, J., Theriaque, D., Li, N., & Mai, V. (2010) · The Journal of Pediatrics · doi:10.1016/j.jpeds.2009.06.063 · Cited by 369
Gut microbial colonisation in premature neonates predicts neonatal sepsis
Madan, J. C., Salari, R. C., Saxena, D., Davidson, L., O'Toole, G. A., Moore, J. H., Sogin, M. L., Foster, J. A., Edwards, W. H., Palumbo, P., et al. (2012) · Archives of Disease in Childhood - Fetal and Neonatal Edition · doi:10.1136/fetalneonatal-2011-301373 · Cited by 340
Sjögren, Y. M., Tomicic, S., Lundberg, A., Böttcher, M. F., Björkstén, B., Sverremark‐Ekström, E., & Jenmalm, M. C. (2009) · Clinical & Experimental Allergy · doi:10.1111/j.1365-2222.2009.03326.x · Cited by 337
Mitchell, A. E., Hong, Y.-J., Koh, E., Barrett, D. M., Bryant, D. E., Denison, R. F., & Kaffka, S. (2007) · Journal of Agricultural and Food Chemistry · doi:10.1021/jf070344+ · Cited by 328
Dendritic Cells Shuttle Microbes Across Gut Epithelial Monolayers
Rescigno, M., Rotta, G., Valzasina, B., & Ricciardi-Castagnoli, P. (2001) · Immunobiology · doi:10.1078/0171-2985-00094 · Cited by 297
Antenatal determinants of neonatal immune responses to allergens
Devereux, G., Barker, R. N., & Seaton, A. (2002) · Clinical & Experimental Allergy · doi:10.1046/j.0022-0477.2001.01267.x · Cited by 288
Dani, C., Oliboni, L. S., Vanderlinde, R., Bonatto, D., Salvador, M., & Henriques, J. A. P. (2007) · Food and Chemical Toxicology · doi:10.1016/j.fct.2007.06.022 · Cited by 261
Wold, A. E. (1998) · Allergy · doi:10.1111/j.1398-9995.1998.tb04953.x · Cited by 261
Magnusson, C. G. M. (1986) · Journal of Allergy and Clinical Immunology · doi:10.1016/0091-6749(86)90237-x · Cited by 247
Wise, M. G., & Siragusa, G. R. (2006) · Journal of Applied Microbiology · doi:10.1111/j.1365-2672.2006.03153.x · Cited by 230
Huurre, A., Laitinen, K., Rautava, S., Korkeamäki, M., & Isolauri, E. (2008) · Clinical & Experimental Allergy · doi:10.1111/j.1365-2222.2008.03008.x · Cited by 204
Maternal smoking is associated with impaired neonatal toll-like-receptor-mediated immune responses
Noakes, P. S., Hale, J., Thomas, R., Lane, C., Devadason, S. G., & Prescott, S. L. (2006) · European Respiratory Journal · doi:10.1183/09031936.06.00050206 · Cited by 191
Wu, T., Chellemi, D. O., Graham, J. H., Martin, K. J., & Rosskopf, E. N. (2007) · Microbial Ecology · doi:10.1007/s00248-007-9276-4 · Cited by 148
Penders, J., Stobberingh, E. E., Thijs, C. T., Adams, H., Vink, C., van Ree, R., & van den Brandt, P. A. (2006) · Clinical & Experimental Allergy · doi:10.1111/j.1365-2222.2006.02599.x · Cited by 148
Impairment of T-regulatory cells in cord blood of atopic mothers
Schaub, B., Liu, J., Höppler, S., Haug, S., Sattler, C., Lluis, A., Illi, S., & von Mutius, E. (2008) · Journal of Allergy and Clinical Immunology · doi:10.1016/j.jaci.2008.04.010 · Cited by 147
Reeve, J. R., Schadt, C. W., Carpenter‐Boggs, L., Kang, S., Zhou, J. Z., & Reganold, J. P. (2010) · The ISME Journal · doi:10.1038/ismej.2010.42 · Cited by 143
Intestinal microbiota and immunoglobulin E responses in 5‐year‐old Estonian children
Sepp, E., Julge, K., Mikelsaar, M., & Björkstén, B. (2005) · Clinical & Experimental Allergy · doi:10.1111/j.1365-2222.2005.02315.x · Cited by 131
Carbonaro, M., & Mattera, M. (2001) · Food Chemistry · doi:10.1016/s0308-8146(00)00248-x · Cited by 130
Abrahamsson, T., Abelius, M. S., Forsberg, A., Björkstén, B., & Jenmalm, M. C. (2011) · Clinical & Experimental Allergy · doi:10.1111/j.1365-2222.2011.03827.x · Cited by 129
Halonen, M. J., Stern, D. A., Taussig, L. M., Wright, A., Ray, C. G., & Martínez, F. D. (1992) · American Review of Respiratory Disease · doi:10.1164/ajrccm/146.4.866 · Cited by 116
Child health and the environment: the INMA Spanish Study
Ribas‐Fitó, N., Ramón, R., Ballester, F., Grimalt, J. O., Marco, A., Olea, N., de la Paz, M. P., Rebagliato, M., Tardón, A., Torrent, M., et al. (2006) · Paediatric and Perinatal Epidemiology · doi:10.1111/j.1365-3016.2006.00745.x · Cited by 116
Self-citationEFFECT OF PARENTAL SMOKING ON IgE LEVELS IN CHILDREN
Kjellman, N. ‐. M. (1981) · The Lancet · doi:10.1016/s0140-6736(81)91749-9 · Cited by 113
Utsugi, M., Dobashi, K., Ishizuka, T., Endou, K., Hamuro, J., Murata, Y., Nakazawa, T., & Mori, M. (2003) · The Journal of Immunology · doi:10.4049/jimmunol.171.2.628 · Cited by 112
Effects of early cigarette smoke exposure on early immune development and respiratory disease
Prescott, S. L. (2008) · Paediatric Respiratory Reviews · doi:10.1016/j.prrv.2007.11.004 · Cited by 104
Murray, C. S., Tannock, G. W., Simon, M. A., Harmsen, H. J. M., Welling, G. W., Čustović, A., & Woodcock, A. A. (2005) · Clinical & Experimental Allergy · doi:10.1111/j.1365-2222.2005.02259.x · Cited by 104
Distinct Pattern of Commensal Gut Microbiota in Toddlers with Eczema
Mah, K. W., Björkstén, B., Lee, B. W., Bever, H. P. V., Shek, L. P., Tan, T. N., Lee, Y. K., & Chua, K. Y. (2006) · International Archives of Allergy and Immunology · doi:10.1159/000092555 · Cited by 101
The Antiallergic Effect of Kefir Lactobacilli
Hong, W., Chen, Y., & Chen, M. (2010) · Journal of Food Science · doi:10.1111/j.1750-3841.2010.01787.x · Cited by 90
Schaub, B., Campo, M., He, H., Perkins, D. L., Gillman, M. W., Gold, D. R., Weiss, S. T., Lieberman, E., & Finn, P. W. (2006) · Respiratory Research · doi:10.1186/1465-9921-7-40 · Cited by 71
Metagenomics and development of the gut microbiota in infants
Vallès, Y., Gosalbes, M. J., de Vries, L. E., Abelián, J. J., & Francino, M. P. (2012) · Clinical Microbiology and Infection · doi:10.1111/j.1469-0691.2012.03876.x · Cited by 69
Self-citationMurata, Y., Amao, M., Yoneda, J., & Hamuro, J. (2002) · Molecular Immunology · doi:10.1016/s0161-5890(01)00111-0 · Cited by 69
van de Kant, K. D. G., Klaassen, E. M. M., Jöbsis, Q., Nijhuis, A. J., van Schayck, O. C. P., & Dompeling, E. (2009) · BMC Public Health · doi:10.1186/1471-2458-9-210 · Cited by 66
Impact of Organic and Conventional Management on the Phyllosphere Microbial Ecology of an Apple Crop
Ottesen, A., White, J. R., Skaltsas, D. N., Newell, M. J., & Walsh, C. S. (2009) · Journal of Food Protection · doi:10.4315/0362-028x-72.11.2321 · Cited by 62
Jones, C. A., Vance, G. H. S., Power, L. L., Pender, S. L. F., MacDonald, T. T., & Warner, J. O. (2001) · Journal of Allergy and Clinical Immunology · doi:10.1067/mai.2001.117178 · Cited by 61
Neonatal immune responses to microbial stimuli: Is there an influence of maternal allergy?
Amoudruz, P., Holmlund, U., Malmström, V., Trollmo, C., Bremme, K., Scheynius, A., & Sverremark‐Ekström, E. (2005) · Journal of Allergy and Clinical Immunology · doi:10.1016/j.jaci.2005.02.036 · Cited by 60
Abelius, M. S., Ernerudh, J., Berg, G. E., Matthiesen, L., Nilsson, L. J., & Jenmalm, M. C. (2011) · Pediatric Research · doi:10.1203/pdr.0b013e31822f2411 · Cited by 59
A survey of the burden of allergic rhinitis in Spain.
Aragonés, A. M., Toledo, R. F., Calatayud, A. M., & Mir, J. C. C. (2009) · PubMed · Cited by 53
Reece, P., Thanendran, A., Crawford, L., et al. (2010) · Journal of Allergy and Clinical Immunology · doi:10.1016/j.jaci.2010.11.006 · Cited by 49
Miyahara, H., Okazaki, N., Nagakura, T., Korematsu, S., & Izumi, T. (2010) · Clinical & Experimental Allergy · doi:10.1111/j.1365-2222.2010.03634.x · Cited by 47
Environment and infant immunity
Björkstén, B. (1999) · Proceedings of The Nutrition Society · doi:10.1017/s0029665199000956 · Cited by 44
Finke, D., & Kraehenbuhl, J.-P. (2001) · Current Opinion in Genetics & Development · doi:10.1016/s0959-437x(00)00233-1 · Cited by 41
Günther, U., Holloway, J. A., Gordon, J. G., Knight, A., Chance, V., Hanley, N. A., Wilson, D. I., French, R. R., Spencer, J., Steer, H. W., et al. (2005) · The Journal of Immunology · doi:10.4049/jimmunol.174.9.5414 · Cited by 30
Cited by
The Human Intestinal Microbiome in Health and Disease
Lynch, S. V., & Pedersen, O. (2016) · New England Journal of Medicine · doi:10.1056/nejmra1600266 · Cited by 3,637
Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life
Bäckhed, F., Roswall, J., Peng, Y., Feng, Q., Jia, H., Kovatcheva-Datchary, P., Li, Y., Xia, Y., Xie, H., Zhong, H., et al. (2015) · Cell Host & Microbe · doi:10.1016/j.chom.2015.04.004 · Cited by 3,315
Role of the normal gut microbiota
Jandhyala, S. M. (2015) · World Journal of Gastroenterology · doi:10.3748/wjg.v21.i29.8787 · Cited by 3,001
The Placenta Harbors a Unique Microbiome
Aagaard, K., Ma, J., Antony, K. M., Ganu, R., Petrosino, J., & Versalovic, J. (2014) · Science Translational Medicine · doi:10.1126/scitranslmed.3008599 · Cited by 2,494
Milani, C., Duranti, S., Bottacini, F., Casey, E., Turroni, F., Mahony, J., Belzer, C., Delgado Palacio, S., Arboleya Montes, S., Mancabelli, L., et al. (2017) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00036-17 · Cited by 1,950
Metadata
- Authors
- Gosalbes, M. J., Llop, S., Vallès, Y., Moya, A., Ballester, F., & Francino, M. P.
- Venue
- Clinical & Experimental Allergy
- Publisher
- Wiley
- Published
- 2013-01-18
- Volume
- 43
- Issue
- 2
- Pages
- 198-211
- ISSN
- 0954-7894 (ISSN-L)
- 1365-2222
- OpenAlex
- W2154987488
- Cited by
- 384
- References
- 72
- FWCI
- 8.60
- Type
- journal article
- Language
- en
- Open access
- closed
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.