Population genetic structure of the stony coral Acropora tenuis shows high but variable connectivity in East Africa
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Aim: The aim of this study is to determine the genetic diversity, population structure and connectivity of the broadcast‐spawning coral Acropora tenuis (Cnidaria; Scleractinia; Acroporidae). Based on the long pelagic larval duration (PLD) of the species, long‐distance dispersal resulting in high connectivity among populations is hypothesized. Location: East Africa (Kenya and Tanzania; 2.5°S ~ 10°S) Methods: A total of 269 samples were collected from 11 sample sites in Kenya and Tanzania spanning a distance of 900 km. The coral fragments were genotyped using seven microsatellite markers. Analyses included population genetic estimations of diversity and population differentiation, principal coordinate analysis (PCoA), Bayesian clustering approaches and testing for isolation by distance (IBD). Results: Moderate, but significant, genetic structure was found when comparing all sample sites, but IBD could not be detected. Based on Bayesian cluster analyses three groups of samples sites could be identified: (1) Kenya and northern Tanzania, (2) southern Tanzania and (3) sample sites located in the Zanzibar and Pemba channels. Main conclusions: High connectivity can be explained by the long‐distance dispersal capacity of A. tenuis and by the influence of the northbound East African Coastal Current facilitating dispersal by effectively spreading larvae along the coast. Oceanographic characteristics rather than distance are factors that determine connectivity among populations of A. tenuis in Kenya and Tanzania. No clear genetic break was identified. However, variable connectivity between sample sites does occur, with limited connectivity of the sample sites Misali and Stonetown.
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Cites
Inference of Population Structure Using Multilocus Genotype Data
Pritchard, J. K., Stephens, M., & Donnelly, P. (2000) · Genetics · doi:10.1093/genetics/155.2.945 · Cited by 33,871 · see citing works
Detecting the number of clusters of individuals using the software structure: a simulation study
Evanno, G., Regnaut, S., & Goudet, J. (2005) · Molecular Ecology · doi:10.1111/j.1365-294x.2005.02553.x · Cited by 21,540 · see citing works
ESTIMATING F -STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE
Weir, B. S., & Cockerham, C. C. (1984) · Evolution · doi:10.1111/j.1558-5646.1984.tb05657.x · Cited by 18,909 · see citing works
Peakall, R., & Smouse, P. E. (2012) · Bioinformatics · doi:10.1093/bioinformatics/bts460 · Cited by 13,165 · see citing works
Earl, D. A., & vonHoldt, B. M. (2011) · Conservation Genetics Resources · doi:10.1007/s12686-011-9548-7 · Cited by 12,389 · see citing works
The interplay between habitat availability and population differentiation
Verkuil, Y. I., Piersma, T., Jukema, J., Zwarts, L., Baker, A. J., & Hooijmeijer, J. C. E. W. (2012) · Biological Journal of the Linnean Society · Cited by 6,547 · see citing works
Coral Reefs Under Rapid Climate Change and Ocean Acidification
Hoegh-Guldberg, O., Mumby, P. J., Hooten, A. J., Steneck, R. S., Greenfield, P., Gomez, E., Harvell, C. D., Sale, P. F., Edwards, A. J., Caldeira, K., et al. (2007) · Science · doi:10.1126/science.1152509 · Cited by 5,885 · see citing works
Rogers, S. M., & Bernatchez, L. (2004) · Molecular Ecology · doi:10.1111/j.1365-294x.2004.02396.x · Cited by 5,111 · see citing works
FSTAT, a Program to Estimate and Test Gene Diversities and Fixation Indices (Version 2.9. 3)
Goudet, J. (2001) · Medical Entomology and Zoology · Cited by 5,026 · see citing works
Cornuet, J. M., & Luikart, G. (1996) · Genetics · doi:10.1093/genetics/144.4.2001 · Cited by 4,365 · see citing works
Confronting the coral reef crisis
Bellwood, D. R., Hughes, T. P., Folke, C., & Nyström, M. (2004) · Nature · doi:10.1038/nature02691 · Cited by 3,430 · see citing works
Ecological goods and services of coral reef ecosystems
Moberg, F., & Folke, C. (1999) · Ecological Economics · doi:10.1016/s0921-8009(99)00009-9 · Cited by 2,102 · see citing works
Larval Dispersal and Marine Population Connectivity
Cowen, R. K., & Sponaugle, S. (2009) · Annual Review of Marine Science · doi:10.1146/annurev.marine.010908.163757 · Cited by 2,077 · see citing works
Global Trajectories of the Long-Term Decline of Coral Reef Ecosystems
Pandolfi, J. M., Bradbury, R., Sala, E., Hughes, T. P., Bjorndal, K. A., Cooke, R. G., McArdle, D. A., McClenachan, L., Newman, M. J. H., Paredes, G. A., et al. (2003) · Science · doi:10.1126/science.1085706 · Cited by 2,001 · see citing works
The monsoon circulation of the Indian Ocean
Schott, F. A., & McCreary, J. P. (2001) · Progress in Oceanography · doi:10.1016/s0079-6611(01)00083-0 · Cited by 1,798 · see citing works
POPULATION GENETICS, DEMOGRAPHIC CONNECTIVITY, AND THE DESIGN OF MARINE RESERVES
Palumbi, S. R. (2003) · Ecological Applications · doi:10.1890/1051-0761(2003)013[0146:pgdcat]2.0.co;2 · Cited by 1,192 · see citing works
WAHLUND, S. (2010) · Hereditas · doi:10.1111/j.1601-5223.1928.tb02483.x · Cited by 1,105 · see citing works
Bleaching of corals on the Great Barrier Reef: differential susceptibilities among taxa
Marshall, P. A., & Baird, A. H. (2000) · Coral Reefs · doi:10.1007/s003380000086 · Cited by 1,046 · see citing works
Status of Coral Reefs of the World: 1998
WILKINSON, C. R. (1998) · Cited by 755 · see citing works
Simultaneous Estimation of Null Alleles and Inbreeding Coefficients
Chybicki, I. J., & Burczyk, J. (2008) · Journal of Heredity · doi:10.1093/jhered/esn088 · Cited by 624 · see citing works
Gao, H., Williamson, S., & Bustamante, C. D. (2007) · Genetics · doi:10.1534/genetics.107.072371 · Cited by 492 · see citing works
Ayre, D. J., & Hughes, T. P. (2000) · Evolution · doi:10.1111/j.0014-3820.2000.tb00704.x · Cited by 451 · see citing works
Connectivity, biodiversity conservation and the design of marine reserve networks for coral reefs
Almany, G. R., Connolly, S. R., Heath, D. D., Hogan, J. D., Jones, G. P., McCook, L. J., Mills, M., Pressey, R. L., & Williamson, D. H. (2009) · Coral Reefs · doi:10.1007/s00338-009-0484-x · Cited by 386 · see citing works
EFFECTS OF CLIMATE AND SEAWATER TEMPERATURE VARIATION ON CORAL BLEACHING AND MORTALITY
McClanahan, T. R., Ateweberhan, M., Muhando, C. A., Maina, J. M., & Mohammed, M. S. (2007) · Ecological Monographs · doi:10.1890/06-1182.1 · Cited by 320 · see citing works
Self-citationThe Rising Tide of Ocean Diseases: Unsolved Problems and Research Priorities
Harvell, C. D., Aronson, R. B., Baron, N., Connell, J. H., Dobson, A. P., Ellner, S., Gerber, L. R., Kim, K., Kuris, A. M., McCallum, H. I., et al. (2004) · Frontiers in Ecology and the Environment · doi:10.1890/1540-9295(2004)002[0375:trtood]2.0.co;2 · Cited by 310 · see citing works
Western Indian Ocean coral communities: bleaching responses and susceptibility to extinction
McClanahan, T. R., Ateweberhan, M., Graham, N., Wilson, S. K., Sebastián, C., Guillaume, M. M. M., & Bruggemann, J. H. (2007) · Marine Ecology Progress Series · doi:10.3354/meps337001 · Cited by 309 · see citing works
A restoration genetics guide for coral reef conservation
Baums, I. (2008) · Molecular Ecology · doi:10.1111/j.1365-294x.2008.03787.x · Cited by 299 · see citing works
Survival dynamics of scleractinian coral larvae and implications for dispersal
Graham, E., Baird, A. H., & Connolly, S. R. (2008) · Coral Reefs · doi:10.1007/s00338-008-0361-z · Cited by 293 · see citing works
Coral Reefs and Ocean Acidification
Kleypas, J. A., & Yates, K. K. (2009) · Oceanography · doi:10.5670/oceanog.2009.101 · Cited by 290 · see citing works
Conservation genetics and the resilience of reef‐building corals
van Oppen, M. J. H., & Gates, R. D. (2006) · Molecular Ecology · doi:10.1111/j.1365-294x.2006.03026.x · Cited by 250 · see citing works
GEOGRAPHIC VARIATION IN CLONAL STRUCTURE IN A REEF-BUILDING CARIBBEAN CORAL,ACROPORA PALMATA
Baums, I. B., Miller, M. W., & Hellberg, M. E. (2006) · Ecological Monographs · doi:10.1890/0012-9615(2006)076[0503:gvicsi]2.0.co;2 · Cited by 238 · see citing works
UNDERWOOD, J. N., SMITH, L. D., VAN OPPEN, M. J. H., & GILMOUR, J. P. (2007) · Molecular Ecology · doi:10.1111/j.1365-294x.2006.03187.x · Cited by 231 · see citing works
The Diversity and Biogeography of Western Indian Ocean Reef-Building Corals
Obura, D. (2012) · PLoS ONE · doi:10.1371/journal.pone.0045013 · Cited by 228 · see citing works
Nishikawa, A., Katoh, M., & Sakai, K. (2003) · Marine Ecology Progress Series · doi:10.3354/meps256087 · Cited by 174 · see citing works
Schröeder, K., Josey, S. A., Herrmann, M. J., et al. (2010) · Journal of Geophysical Research Atmospheres · doi:10.1029/2009jc005749 · Cited by 160 · see citing works
Ecologically relevant dispersal of corals on isolated reefs: implications for managing resilience
Underwood, J. N., Smith, L. D., Oppen, M. J. H. V., & Gilmour, J. P. (2009) · Ecological Applications · doi:10.1890/07-1461.1 · Cited by 157 · cited 11× · see citing works
“Colonies formed by clonal fragmentation comprise on average 10% of sampled colonies of A. tenuis in the GBR, where this appears to be variable per reef (Underwood, 2009).”
BackgroundInfluentialEpisodic heterogeneous decline and recovery of coral cover in the Indian Ocean
Ateweberhan, M., McClanahan, T. R., Graham, N. A. J., & Sheppard, C. R. C. (2011) · Coral Reefs · doi:10.1007/s00338-011-0775-x · Cited by 122 · see citing works
Multiple population structure of the giant mottled eel, Anguilla marmorata
Minegishi, Y., Aoyama, J., & Tsukamoto, K. (2008) · Molecular Ecology · doi:10.1111/j.1365-294x.2008.03822.x · Cited by 117 · see citing works
Seasonal and interannual variability in the Mozambique Channel from moored current observations
Ridderinkhof, H., van der Werf, P. M., Ullgren, J. E., van Aken, H. M., van Leeuwen, P. J., & de Ruijter, W. P. M. (2010) · Journal of Geophysical Research Atmospheres · doi:10.1029/2009jc005619 · Cited by 105 · see citing works
Magalon, H., Adjeroud, M., & Veuille, M. (2005) · Molecular Ecology · doi:10.1111/j.1365-294x.2005.02430.x · Cited by 102 · see citing works
Genetic Traces of Recent Long-Distance Dispersal in a Predominantly Self-Recruiting Coral
van Oppen, M. J. H., Lutz, A., De'ath, G., Peplow, L., & Kininmonth, S. (2008) · PLoS ONE · doi:10.1371/journal.pone.0003401 · Cited by 97 · cited 3× · see citing works
“…can be attributed to genetic patchiness caused by biological factors concerning temporal and spatial admixture for A. tenuis from the GBR (Underwood, 2009), whereas LD in combination with heterozygote deficits can be attributed to the recent admixture of populations (van Oppen et al., 2008).”
BackgroundInfluentialBiogeography and Change among Regional Coral Communities across the Western Indian Ocean
McClanahan, T. R., Ateweberhan, M., Darling, E. S., Graham, N. A. J., & Muthiga, N. A. (2014) · PLoS ONE · doi:10.1371/journal.pone.0093385 · Cited by 89 · see citing works
Gene Flow and Genetic Diversity of a Broadcast-Spawning Coral in Northern Peripheral Populations
Nakajima, Y., Nishikawa, A., Iguchi, A., & Sakai, K. (2010) · PLoS ONE · doi:10.1371/journal.pone.0011149 · Cited by 82 · see citing works
Combosch, D. J., & Vollmer, S. V. (2011) · PLoS ONE · doi:10.1371/journal.pone.0021200 · Cited by 82 · see citing works
Contrasting population genetic structures of sympatric, mass-spawning Caribbean corals
Severance, E. G., & Karl, S. A. (2006) · Marine Biology · doi:10.1007/s00227-006-0332-2 · Cited by 80 · see citing works
Isolation by distance in the scleractinian coral Seriatopora hystrix from the Red Sea
Maier, E., Tollrian, R., Rinkevich, B., & Nürnberger, B. (2005) · Marine Biology · doi:10.1007/s00227-005-0013-6 · Cited by 77 · see citing works
Silva, I. C., Mesquita, N., & de Paula, J. R. (2010) · Marine Biology · doi:10.1007/s00227-010-1393-9 · Cited by 77 · see citing works
Genetic connectivity patterns of Pocillopora verrucosa in southern African Marine Protected Areas
Ridgway, T. M., Riginos, C., Davis, J., et al. (2008) · Marine Ecology Progress Series · doi:10.3354/meps07245 · Cited by 63 · see citing works
MacKenzie, J. B., Munday, P. L., Willis, B. L., Miller, D. J., & van Oppen, M. J. H. (2003) · Molecular Ecology · doi:10.1046/j.1365-294x.2003.02019.x · Cited by 61 · see citing works
Nishikawa, A., & Sakai, K. (2005) · ZOOLOGICAL SCIENCE · doi:10.2108/zsj.22.391 · Cited by 60 · see citing works
Ragionieri, L., Cannicci, S., Schubart, C. D., et al. (2009) · Estuarine Coastal and Shelf Science · doi:10.1016/j.ecss.2009.11.002 · Cited by 57 · see citing works
Adjeroud, M., Guérécheau, A., Vidal‐Dupiol, J., Flot, J., Arnaud‐Haond, S., & Bonhomme, F. (2013) · Marine Biology · doi:10.1007/s00227-013-2355-9 · Cited by 54 · see citing works
van Oppen, M. J. H., Underwood, J. N., Muirhead, A., & Peplow, L. M. (2006) · Molecular Ecology Notes · doi:10.1111/j.1471-8286.2006.01610.x · Cited by 52 · see citing works
Visram, S., Yang, M., Pillay, R. M., et al. (2010) · Marine Biology · doi:10.1007/s00227-010-1422-8 · Cited by 50 · see citing works
Underwood, J. N. (2009) · Evolutionary Applications · doi:10.1111/j.1752-4571.2008.00065.x · Cited by 49 · see citing works
Surface drifter trajectories highlight flow pathways in the Mozambique Channel
Hancke, L., Roberts, M. J., & Ternon, J. (2013) · Deep Sea Research Part II Topical Studies in Oceanography · doi:10.1016/j.dsr2.2013.10.014 · Cited by 48 · see citing works
Patterns of genetic structuring in the coral Pocillopora damicornis on reefs in East Africa
Souter, P., Henriksson, O., Olsson, N., & Grahn, M. (2009) · BMC Ecology · doi:10.1186/1472-6785-9-19 · Cited by 42 · see citing works
The recovery of coral genetic diversity in the Sunda Strait following the 1883 eruption of Krakatau
Starger, C. J., Barber, P. H., Ambariyanto, A., & Baker, A. C. (2010) · Coral Reefs · doi:10.1007/s00338-010-0609-2 · Cited by 42 · see citing works
Campagne, P., Smouse, P. E., Varouchas, G., et al. (2012) · Molecular Ecology Resources · doi:10.1111/1755-0998.12015 · Cited by 37 · see citing works
Present and past genetic connectivity of the Indo‐Pacific tropical eel Anguilla bicolor
Minegishi, Y., Gagnaire, P., Aoyama, J., Bosc, P., Feunteun, É., Tsukamoto, K., & Berrebi, P. (2011) · Journal of Biogeography · doi:10.1111/j.1365-2699.2011.02603.x · Cited by 36 · see citing works
Rarity and genetic diversity in I ndo– P acific A croporacorals
Richards, Z. T., & van Oppen, M. J. H. (2012) · Ecology and Evolution · doi:10.1002/ece3.304 · Cited by 34 · see citing works
Silva, S. E., Silva, I. C., Madeira, C., et al. (2013) · Biological Journal of the Linnean Society · doi:10.1111/j.1095-8312.2012.02041.x · Cited by 33 · see citing works
Macdonald, A. H. H., Schleyer, M. H., & Lamb, J. M. (2010) · Marine Biology · doi:10.1007/s00227-010-1585-3 · Cited by 32 · see citing works
Farhadi, A., Farhamand, H., Nematollahi, M. A., et al. (2013) · ICES Journal of Marine Science · doi:10.1093/icesjms/fst097 · Cited by 27 · see citing works
Madeira, C., Alves, M. J., Mesquita, N., et al. (2012) · Biological Journal of the Linnean Society · doi:10.1111/j.1095-8312.2012.01967.x · Cited by 24 · see citing works
The importance of the greater Agulhas Current is increasingly being recognised
Lutjeharms, J. R. E., & Bornman, T. G. (2010) · South African Journal of Science · doi:10.4102/sajs.v106i3/4.160 · Cited by 20 · see citing works
Souter, P., & Grahn, M. (2008) · Coral Reefs · doi:10.1007/s00338-007-0342-7 · Cited by 16 · see citing works
First oceanographic survey of the entire continental shelf adjacent to the northern Agulhas Current
Lütjeharms, J. R. E., Durgadoo, J. V., Schapira, M., & McQuaid, C. D. (2010) · South African Journal of Science · doi:10.4102/sajs.v106i9/10.410 · Cited by 8 · see citing works
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- Authors
- van der Ven, R. M., Triest, L., De Ryck, D. J. R., Mwaura, J. M., Mohammed, M. S., & Kochzius, M.
- Affiliations
- Marine Biology Vrije Universiteit Brussel (VUB) 1050 Brussels Belgium
- Vrije Universiteit Brussel (BE)
- Laboratory of Plant Biology and Nature Management Vrije Universiteit Brussel (VUB) 1050 Brussels Belgium
- Kenya Marine and Fisheries Research Institute (KE)
- State University of Zanzibar (TZ)
- Venue
- Journal of Biogeography
- Publisher
- Wiley
- Published
- 2015-10-26
- Volume
- 43
- Issue
- 3
- Pages
- 510-519
- ISSN
- 0305-0270 (ISSN-L)
- 1365-2699
- OpenAlex
- W1820467105
- Cited by
- 39
- References
- 68
- Citations by year
- 2026: 2 · 2025: 4 · 2024: 2 · 2023: 1 · 2022: 6 · 2021: 4 · 2020: 3 · 2019: 5 · 2018: 4 · 2017: 4 · 2016: 4
- FWCI
- 3.62
- Type
- journal article
- Language
- en
- Open access
- green
- research.wur.nl
- Locations
- Journal of Biogeography (publishedVersion)
- Socio-Environmental Systems Modeling (submittedVersion)
- VUBIR (Vrije Universiteit Brussel) (submittedVersion)
- Data Archiving and Networked Services (DANS) (submittedVersion)
- Funders
- Fonds Wetenschappelijk Onderzoek (1501612N)
- Vrije Universiteit Brussel (OZR2068BOF)
- Topics
- Physical Sciences › Environmental Science › Ecology › Coral and Marine Ecosystems Studies
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic diversity and population structure
- Physical Sciences › Earth and Planetary Sciences › Oceanography › Marine Biology and Ecology Research
- Keywords
- Acropora tenuis, Scleractinia, population structure, larval connectivity, long-distance dispersal, broadcast spawning, genetic diversity, isolation by distance, Kenya, Tanzania
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