Gut-brain axis serotonergic responses to acute stress exposure are microbiome-dependent
Abstract
BACKGROUND: Understanding the mechanisms underpinning the response to acute stress is critical for determining how this can be modulated in both health and disease and across sexes. Stress can markedly alter the microbiome and gut-brain axis signaling with the serotonergic system being particularly sensitive to acute stress. As the impact of acute stress on regional serotonergic dynamics in the gut-brain axis and the contribution of the microbiome to this are poorly appreciated, we used microbiota-deficient mice to assess whether the serotonergic response to acute stress exposure is microbiome dependent. METHODS: Adult male and female conventional, germ-free, and colonized germ-free mice underwent a single acute stressor and samples were harvested immediately or 45 minutes following stress. Serotonin and related metabolites and serotonergic gene expression were determined. KEY RESULTS: Our data clearly show the microbiota influenced gastrointestinal serotonergic response to acute stress in a sex- and region-dependent manner. Male-specific poststress increases in colonic serotonin were absent in germ-free mice but normalized following colonization. mRNA serotonergic gene expression was differentially expressed in colon and ileum of germ-free mice on a sex-dependent basis. Within the frontal cortex, absence of the microbiome altered basal serotonin, its main metabolite 5-hydroxyindoleacetic acid, and prevented stress-induced increases in serotonin turnover. CONCLUSIONS AND INFERENCES: The gut microbiome influences the set points of the brain and gastrointestinal serotonergic systems and affected their response to acute stress in a sex- and region-dependent manner.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Several metabolomic studies show alterations in the dopamine and serotonin systems in germ-free animals.
“Several metabolomic studies show alterations in the dopamine and serotonin systems (124, 189, 350, 378–380).”
From Signalling cognition: The gut microbiota and hypothalamic-pituitary-adrenal axis (2023) · cites this paper as [379]
These changes include increased hippocampal dopamine D1 receptor mRNA levels, decreased dopamine D1 receptor in the striatum and nucleus accumbens, increased serotonin in the blood and hippocampus, and decreased serotonin receptor expression.
“These changes include increased hippocampal dopamine D1 receptor mRNA levels and decreased dopamine D1 receptor in the striatum and nucleus accumbens, as well as increased serotonin in the blood and hippocampus, with decreased serotonin receptor expression, respectively.”
From Signalling cognition: The gut microbiota and hypothalamic-pituitary-adrenal axis (2023) · cites this paper as [379]
Cites
Indigenous bacteria from the gut microbiota regulate host serotonin biosynthesis
Yano, J. M., Yu, K., Donaldson, G. P., Shastri, G. G., Ann, P., Ma, L., Nagler, C. R., Ismagilov, R. F., Mazmanian, S. K., & Hsiao, E. Y. (2015) · Cell · doi:10.1016/j.cell.2015.02.047 · Cited by 3,614 · see citing works
Sudo, N., Chida, Y., Aiba, Y., Sonoda, J., Oyama, N., Yu, X., Kubo, C., & Koga, Y. (2004) · The Journal of Physiology · doi:10.1113/jphysiol.2004.063388 · Cited by 2,735 · see citing works
Gut biogeography of the bacterial microbiota
Donaldson, G. P., Lee, S. M., & Mazmanian, S. K. (2016) · Nature Reviews Microbiology · doi:10.1038/nrmicro3552 · Cited by 2,535 · see citing works
Serotonin, tryptophan metabolism and the brain-gut-microbiome axis
O’Mahony, S. M., Clarke, G., Borre, Y. E., Dinan, T. G., & Cryan, J. F. (2015) · Behavioural Brain Research · doi:10.1016/j.bbr.2014.07.027 · Cited by 2,012 · see citing works
Self-citationClarke, G., Grenham, S., Scully, P., Fitzgerald, P., Moloney, R. D., Shanahan, F., Dinan, T. G., & Cryan, J. F. (2013) · Molecular Psychiatry · doi:10.1038/mp.2012.77 · Cited by 1,893 · see citing works
Self-citationWhy is depression more common among women than among men?
Kuehner, C. (2017) · The Lancet Psychiatry · doi:10.1016/s2215-0366(16)30263-2 · Cited by 1,752 · see citing works
Motulsky, H. J., & Brown, R. E. (2006) · BMC Bioinformatics · doi:10.1186/1471-2105-7-123 · Cited by 1,616 · see citing works
Gershon, M. D., & Tack, J. (2007) · Gastroenterology · doi:10.1053/j.gastro.2006.11.002 · Cited by 1,563 · see citing works
Neufeld, K. M., Kang, N., Bienenstock, J., & Foster, J. A. (2011) · Neurogastroenterology & Motility · doi:10.1111/j.1365-2982.2010.01620.x · Cited by 1,392 · see citing works
Reigstad, C. S., Salmonson, C. E., III, J. F. R., Szurszewski, J. H., Linden, D. R., Sonnenburg, J. L., Farrugia, G., & Kashyap, P. C. (2015) · The FASEB Journal · doi:10.1096/fj.14-259598 · Cited by 1,335 · see citing works
Stress & the gut-brain axis: Regulation by the microbiome
Foster, J. A., Rinaman, L., & Cryan, J. F. (2017) · Neurobiology of Stress · doi:10.1016/j.ynstr.2017.03.001 · Cited by 1,150 · see citing works
Self-citationEnck, P., Aziz, Q., Barbara, G., Farmer, A. D., Fukudo, S., Mayer, E. A., Niesler, B., Quigley, E. M. M., Rajilić-Stojanović, M. D., Schemann, M., et al. (2016) · Nature Reviews Disease Primers · doi:10.1038/nrdp.2016.14 · Cited by 1,057 · see citing works
van de Wouw, M., Boehme, M., Lyte, J. M., Wiley, N., Strain, C., O'Sullivan, O., Clarke, G., Stanton, C., Dinan, T. G., & Cryan, J. F. (2018) · The Journal of Physiology · doi:10.1113/jp276431 · Cited by 789 · see citing works
Self-citationCrumeyrolle-Arias, M., Jaglin, M., Bruneau, A., Vancassel, S., Cardona, A., Daugé, V., Naudon, L., & Rabot, S. (2014) · Psychoneuroendocrinology · doi:10.1016/j.psyneuen.2014.01.014 · Cited by 581 · see citing works
Gong, S., Miao, Y.-L., Jiao, G.-Z., Sun, M.-J., Li, H., Lin, J., Luo, M.-J., & Tan, J.-H. (2015) · PLOS ONE · doi:10.1371/journal.pone.0117503 · Cited by 460 · see citing works
Corticosteroid–serotonin interactions in the neurobiological mechanisms of stress-related disorders
Lanfumey, L., Mongeau, R., Cohen‐Salmon, C., & Hamon, M. (2008) · Neuroscience & Biobehavioral Reviews · doi:10.1016/j.neubiorev.2008.04.006 · Cited by 339 · see citing works
Irritable bowel syndrome: A microbiome-gut-brain axis disorder?
Kennedy, P. J. (2014) · World Journal of Gastroenterology · doi:10.3748/wjg.v20.i39.14105 · Cited by 335 · see citing works
Serotonin activates the hypothalamic–Pituitary–Adrenal axis via serotonin 2C receptor stimulation
Heisler, L. K., Pronchuk, N., Nonogaki, K., Zhou, L., Raber, J., Tung, L., Yeo, G. S. H., O'Rahilly, S., Colmers, W. F., Elmquist, J. K., et al. (2007) · Journal of Neuroscience · doi:10.1523/jneurosci.2584-06.2007 · Cited by 292 · see citing works
Non-conventional features of peripheral serotonin signalling — the gut and beyond
Spohn, S. N., & Mawe, G. M. (2017) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/nrgastro.2017.51 · Cited by 282 · see citing works
Keeney, A. J., Jessop, D. S., Harbuz, M. S., Marsden, C. A., Hogg, S. L., & Blackburn-Munro, R. E. (2006) · Journal of Neuroendocrinology · doi:10.1111/j.1365-2826.2006.01422.x · Cited by 257 · see citing works
The small intestine microbiota, nutritional modulation and relevance for health
El Aidy, S., van den Bogert, B., & Kleerebezem, M. (2015) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2014.09.005 · Cited by 244 · see citing works
Kwon, Y. H., Wang, H., Denou, E., Ghia, J., Rossi, L., Fontes, M. E., Bernier, S. P., Shajib, M. S., Banskota, S., Collins, S. M., et al. (2019) · Cellular and Molecular Gastroenterology and Hepatology · doi:10.1016/j.jcmgh.2019.01.004 · Cited by 223 · see citing works
Microbial Endocrinology: The Microbiota-Gut-Brain Axis in Health and Disease
Lyte, M., & Cryan, J. (2014) · Advances in Experimental Medicine and Biology · doi:10.1007/978-1-4939-0897-4 · Cited by 212 · see citing works
Self-citationRegulation of gut luminal serotonin by commensal microbiota in mice
Hata, T., Asano, Y., Yoshihara, K., Kimura-Todani, T., Miyata, N., Zhang, X.-T., Takakura, S., Aiba, Y., Koga, Y., & Sudo, N. (2017) · PLOS ONE · doi:10.1371/journal.pone.0180745 · Cited by 211 · see citing works
You’ve got male: Sex and the microbiota-gut-brain axis across the lifespan
Jaggar, M., Rea, K., Spichak, S., Dinan, T. G., & Cryan, J. F. (2020) · Frontiers in Neuroendocrinology · doi:10.1016/j.yfrne.2019.100815 · Cited by 200 · see citing works
Self-citationThe burden of IBS: Looking at metrics
Spiegel, B. M. R. (2009) · Current Gastroenterology Reports · doi:10.1007/s11894-009-0039-x · Cited by 170 · see citing works
Bland, S. T., Hargrave, D., Pepin, J. L., Amat, J., Watkins, L. R., & Maier, S. F. (2003) · Neuropsychopharmacology · doi:10.1038/sj.npp.1300206 · Cited by 155 · see citing works
Dale, E., Pehrson, A. L., Jeyarajah, T., Li, Y., Leiser, S. C., Smagin, G. N., Olsen, C. K., & Sánchez, C. (2015) · CNS Spectrums · doi:10.1017/s1092852915000425 · Cited by 152 · see citing works
Clostridium ramosum regulates enterochromaffin cell development and serotonin release
Mandić, A. D., Woting, A., Jaenicke, T., Sander, A., Sabrowski, W., Rolle-Kampcyk, U., von Bergen, M., & Blaut, M. (2019) · Scientific Reports · doi:10.1038/s41598-018-38018-z · Cited by 150 · see citing works
Clarke, G., Fitzgerald, P., Cryan, J., Cassidy, E., Quigley, E., & Dinan, T. (2009) · BMC Gastroenterology · doi:10.1186/1471-230x-9-6 · Cited by 135 · see citing works
Self-citationFitzgerald, P., Eugene, M. C., Clarke, G. A., Scully, P., Barry, S., Eamonn, M. M. Q., Shanahan, F., Cryan, J. F., & Dinan, T. G. (2008) · Neurogastroenterology & Motility · doi:10.1111/j.1365-2982.2008.01195.x · Cited by 122 · see citing works
Self-citationIndoleamine 2,3 dioxygenase in intestinal disease
Ciorba, M. A. (2012) · Current Opinion in Gastroenterology · doi:10.1097/mog.0b013e32835c9cb3 · Cited by 116 · see citing works
Sex Differences in the Serotonergic Influence on the Hypothalamic-Pituitary-Adrenal Stress Axis
Goel, N., & Bale, T. L. (2010) · Endocrinology · doi:10.1210/en.2009-1180 · Cited by 113 · see citing works
Increased vulnerability to psychosocial stress in heterozygous serotonin transporter knockout mice
Bartolomucci, A., Carola, V., Pascucci, T., Puglisi‐Allegra, S., Cabib, S., Lesch, K., Parmigiani, S., Palanza, P., & Gross, C. T. (2010) · Disease Models & Mechanisms · doi:10.1242/dmm.004614 · Cited by 112 · see citing works
Serotonin is a sword and a shield of the bowel: serotonin plays offense and defense.
Gershon, M. D. (2012) · PubMed Central · Cited by 111 · see citing works
Social interaction-induced activation of RNA splicing in the amygdala of microbiome-deficient mice
Stilling, R. M., Moloney, G. M., Ryan, F. J., Hoban, A. E., Bastiaanssen, T. F., Shanahan, F., Clarke, G., Claesson, M. J., Dinan, T. G., & Cryan, J. F. (2018) · eLife · doi:10.7554/elife.33070 · Cited by 106 · see citing works
Self-citationHow does sex matter? Behavior, stress and animal models of neurobehavioral disorders
Palanza, P., & Parmigiani, S. (2017) · Neuroscience & Biobehavioral Reviews · doi:10.1016/j.neubiorev.2017.01.037 · Cited by 101 · see citing works
Stress and visceral pain: Focusing on irritable bowel syndrome
Fukudo, S. (2013) · Pain · doi:10.1016/j.pain.2013.09.008 · Cited by 90 · see citing works
Lyte, M., & Brown, D. R. (2018) · PLoS ONE · doi:10.1371/journal.pone.0191037 · Cited by 60 · see citing works
Distribution of membrane-bound monoamine oxidase in bacteria
Murooka, Y., Doi, N., & Harada, T. (1979) · Applied and Environmental Microbiology · doi:10.1128/aem.38.4.565-569.1979 · Cited by 55 · see citing works
CrossTalk proposal: 5-HT is necessary for peristalsis
Smith, T. K., & Gershon, M. D. (2015) · The Journal of Physiology · doi:10.1113/jp270182 · Cited by 51 · see citing works
Julio‐Pieper, M., O’Mahony, C. M., Clarke, G. A., Bravo, J. A., Dinan, T. G., & Cryan, J. F. (2011) · Stress · doi:10.3109/10253890.2011.607524 · Cited by 50 · see citing works
Self-citationBrowne, C. A., Clarke, G. A., Dinan, T. G., & Cryan, J. F. (2010) · Neuropharmacology · doi:10.1016/j.neuropharm.2010.11.020 · Cited by 48 · see citing works
Self-citationMillan, M. J., Rivet, J., & Gobert, A. (2016) · Journal of Psychopharmacology · doi:10.1177/0269881116672342 · Cited by 45 · see citing works
Serotonin in the Gut: What Does It Do?
Bornstein, J. C. (2012) · Frontiers in Neuroscience · doi:10.3389/fnins.2012.00016 · Cited by 38 · see citing works
Serotonin in the Frontal Cortex: A Potential Therapeutic Target for Neurological Disorders
Lü, H., & Liu, Q.-S. (2017) · Biochemistry & Pharmacology Open Access · doi:10.4172/2167-0501.1000e184 · Cited by 12 · see citing works
Spencer, N. J., Sia, T. C., Brookes, S. J., Costa, M., & Keating, D. J. (2015) · The Journal of Physiology · doi:10.1113/jp270684 · Cited by 5 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Signalling cognition: The gut microbiota and hypothalamic-pituitary-adrenal axis
Rusch, J. A., Layden, B. T., & Dugas, L. R. (2023) · Frontiers in Endocrinology · doi:10.3389/fendo.2023.1130689 · Cited by 415 · see citing works
Microbial-derived metabolites as a risk factor of age-related cognitive decline and dementia
Connell, E., Le Gall, G., Pontifex, M. G., Sami, S., Cryan, J. F., Clarke, G., Müller, M., & Vauzour, D. (2022) · Molecular Neurodegeneration · doi:10.1186/s13024-022-00548-6 · Cited by 208 · see citing works
- Authors
- Lyte, J. M., Gheorghe, C. E., Goodson, M. S., Kelley‐Loughnane, N., Dinan, T. G., Cryan, J. F., & Clarke, G.
- Affiliations
- University College Cork (IE)
- United States Air Force Research Laboratory (US)
- Corresponding author
- Clarke, Gerard
- ORCID
- Venue
- Neurogastroenterology & Motility
- Publisher
- Wiley
- Published
- 2020-05-11
- Volume
- 32
- Issue
- 11
- Pages
- e13881-e13881
- ISSN
- 1350-1925 (ISSN-L)
- 1365-2982
- OpenAlex
- W3021933741
- Cited by
- 77
- References
- 47
- Citations by year
- 2026: 10 · 2025: 21 · 2024: 15 · 2023: 8 · 2022: 10 · 2021: 12 · 2020: 1
- FWCI
- 2.51
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- Locations
- Neurogastroenterology & Motility (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Science Foundation Ireland (SFI/12/RC/2273)
- Air Force Office of Scientific Research (FA9550‐17‐1‐0016)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Health Sciences › Medicine › Gastroenterology › Gastrointestinal motility and disorders
- Life Sciences › Neuroscience › Behavioral Neuroscience › Stress Responses and Cortisol
- Keywords
- gut-brain axis, acute stress, gut microbiota, serotonergic system, serotonin, 5-hydroxyindoleacetic acid, germ-free mice, microbiota colonization, sex differences, frontal cortex, serotonin turnover
- MeSH terms
- Gastrointestinal Microbiome, Animals, Colon, Corticosterone, Female, Frontal Lobe, Germ-Free Life, Hydroxyindoleacetic Acid, Ileum, Male, Restraint, Physical, RNA, Messenger, Serotonin, Sex Factors, Stress, Psychological, Tryptophan Hydroxylase, Gene Expression, Indoleamine-Pyrrole 2,3,-Dioxygenase, Mice
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review