An R2R3‐ MYB transcription factor regulates carotenoid pigmentation in Mimulus lewisii flowers
Open accessAbstract
Summary: Carotenoids are yellow, orange, and red pigments that contribute to the beautiful colors and nutritive value of many flowers and fruits. The structural genes in the highly conserved carotenoid biosynthetic pathway have been well characterized in multiple plant systems, but little is known about the transcription factors that control the expression of these structural genes. By analyzing a chemically induced mutant of Mimulus lewisii through bulk segregant analysis and transgenic experiments, we have identified an R2R3‐ MYB , Reduced Carotenoid Pigmentation 1 ( RCP 1), as the first transcription factor that positively regulates carotenoid biosynthesis during flower development. Loss‐of‐function mutations in RCP 1 lead to down‐regulation of all carotenoid biosynthetic genes and reduced carotenoid content in M. lewisii flowers, a phenotype recapitulated by RNA interference in the wild‐type background. Overexpression of this gene in the rcp1 mutant background restores carotenoid production and, unexpectedly, results in simultaneous decrease of anthocyanin production in some transgenic lines by down‐regulating the expression of an activator of anthocyanin biosynthesis. Identification of transcriptional regulators of carotenoid biosynthesis provides the ‘toolbox’ genes for understanding the molecular basis of flower color diversification in nature and for potential enhancement of carotenoid production in crop plants via genetic engineering.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Carotenoids are dietary antioxidants that have demonstrated photoprotective activity.
“Carotenoids are dietary antioxidants that have demonstrated photoprotective activity.”
From Antioxidants from Plants Protect against Skin Photoaging (2018) · cites this paper as [103]
In plants, carotenoids act as accessory light-harvesting pigments and protect from photooxidative damage.
“In plants, these compounds are components of the photosynthetic machinery where they act as accessory light-harvesting pigments and protect from photooxidative damage [103].”
From Antioxidants from Plants Protect against Skin Photoaging (2018) · cites this paper as [103]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
A new mathematical model for relative quantification in real-time RT-PCR
Pfaffl, M. W. (2001) · Nucleic Acids Research · doi:10.1093/nar/29.9.e45 · Cited by 34,610 · see citing works
MYB transcription factors in Arabidopsis
Dubos, C., Stracke, R., Erich Grotewold, A., Weißhaar, B., Martin, C. R., & Lepiniec, L. (2010) · Trends in Plant Science · doi:10.1016/j.tplants.2010.06.005 · Cited by 4,885 · see citing works
Engineering the Provitamin A (β-Carotene) Biosynthetic Pathway into (Carotenoid-Free) Rice Endosperm
Ye, X., Al‐Babili, S., Klöti, A., Zhang, J., Lucca, P., Beyer, P., & Potrykus, I. (2000) · Science · doi:10.1126/science.287.5451.303 · Cited by 2,270 · see citing works
The R2R3-MYB gene family in Arabidopsis thaliana
Stracke, R., Werber, M., & Weißhaar, B. (2001) · Current Opinion in Plant Biology · doi:10.1016/s1369-5266(00)00199-0 · Cited by 2,180 · see citing works
PHOTOPROTECTION REVISITED:Genetic and Molecular Approaches
Niyogi, K. (1999) · Annual Review of Plant Physiology and Plant Molecular Biology · doi:10.1146/annurev.arplant.50.1.333 · Cited by 1,937 · see citing works
Gateway‐compatible vectors for plant functional genomics and proteomics
Earley, K. W., Haag, J. R., Pontes, O., Opper, K., Juehne, T., Song, K., & Pikaard, C. S. (2006) · The Plant Journal · doi:10.1111/j.1365-313x.2005.02617.x · Cited by 1,793 · see citing works
The biosynthesis and nutritional uses of carotenoids
Fraser, P. D. (2003) · Progress in Lipid Research · doi:10.1016/j.plipres.2003.10.002 · Cited by 1,382 · see citing works
Manning, K. C., Tör, M., Poole, M., Hong, Y., Thompson, A. J., King, G. J. W., Giovannoni, J. J., & Seymour, G. B. (2006) · Nature Genetics · doi:10.1038/ng1841 · Cited by 1,312 · see citing works
A MADS-Box Gene Necessary for Fruit Ripening at the Tomato Ripening-Inhibitor ( Rin ) Locus
Vrebalov, J., Ruezinsky, D. M., Padmanabhan, V., et al. (2002) · Science · doi:10.1126/science.1068181 · Cited by 1,140 · see citing works
Zhong, R., Lee, C., Zhou, J., et al. (2008) · The Plant Cell · doi:10.1105/tpc.108.061325 · Cited by 962 · see citing works
In vivo functions of carotenoids in higher plants
Demmig‐Adams, B., Gilmore, A. M., & Adams, W. W. (1996) · The FASEB Journal · doi:10.1096/fasebj.10.4.8647339 · Cited by 765 · see citing works
Allele substitution at a flower colour locus produces a pollinator shift in monkeyflowers
Bradshaw, H. D. J., & Schemske, D. (2003) · Nature · doi:10.1038/nature02106 · Cited by 739 · see citing works
Ronen, G., Carmel-Goren, L., Zamir, D., & Hirschberg, J. (2000) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.190177497 · Cited by 622 · see citing works
Carotenoid Biosynthesis in Arabidopsis: A Colorful Pathway
Ruiz‐Sola, M. Á., & Rodrı́guez-Concepción, M. (2012) · The Arabidopsis Book · doi:10.1199/tab.0158 · Cited by 611 · see citing works
Isaacson, T., Ronen, G., Zamir, D., & Hirschberg, J. (2002) · The Plant Cell · doi:10.1105/tpc.010303 · Cited by 582 · see citing works
Marín, E., Nussaume, L., Quesada, A., Gonneau, M., Sotta, B., Hugueney, P., Frey, A., & Marion‐Poll, A. (1996) · The EMBO Journal · doi:10.1002/j.1460-2075.1996.tb00589.x · Cited by 550 · see citing works
Fruit ripening mutants yield insights into ripening control
Giovannoni, J. J. (2007) · Current Opinion in Plant Biology · doi:10.1016/j.pbi.2007.04.008 · Cited by 536 · see citing works
Fraser, P. D., Römer, S., Shipton, C. A., Mills, P. B., Kiano, J. W., Misawa, N., Drake, R., Schuch, W., & Bramley, P. M. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.241374598 · Cited by 483 · see citing works
Cunningham, F. X., Pogson, B. J., Sun, Z., McDonald, K. A., DellaPenna, D., & Gantt, E. (1996) · The Plant Cell · doi:10.1105/tpc.8.9.1613 · Cited by 472 · see citing works
Liu, Y., Roof, S. K., Ye, Z., Barry, C. S., van Tuinen, A., Vrebalov, J., Bowler, C., & Giovannoni, J. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0400935101 · Cited by 469 · see citing works
Fleshy Fruit Expansion and Ripening Are Regulated by the Tomato SHATTERPROOF Gene TAGL1
Vrebalov, J., Pan, I. L., Matas, A. J., et al. (2009) · The Plant Cell · doi:10.1105/tpc.109.066936 · Cited by 463 · see citing works
Martel, C., Vrebalov, J., Tafelmeyer, P., et al. (2011) · PLANT PHYSIOLOGY · doi:10.1104/pp.111.181107 · Cited by 458 · see citing works
A tomato (Solanum lycopersicum) APETALA2/ERF gene, SlAP2a, is a negative regulator of fruit ripening
Chung, M.-Y., Vrebalov, J., Alba, R., et al. (2010) · The Plant Journal · doi:10.1111/j.1365-313x.2010.04384.x · Cited by 412 · see citing works
Zhu, M., Chen, G., Zhou, S. Y., Tu, Y., Wang, Y., Dong, T., & Hu, Z. (2013) · Plant and Cell Physiology · doi:10.1093/pcp/pct162 · Cited by 397 · see citing works
TOMATO AGAMOUS‐LIKE 1 is a component of the fruit ripening regulatory network
Itkin, M., Seybold, H., Breitel, D., et al. (2009) · The Plant Journal · doi:10.1111/j.1365-313x.2009.04064.x · Cited by 356 · see citing works
Lee, J. M., Joung, J., McQuinn, R. P., Chung, M., Fei, Z., Tieman, D. M., Klee, H. J., & Giovannoni, J. J. (2011) · The Plant Journal · doi:10.1111/j.1365-313x.2011.04863.x · Cited by 353 · see citing works
Bemer, M., Karlova, R., Ballester, A., Tikunov, Y. M., Bovy, A. G., Wolters‐Arts, M., Rossetto, P. B., Angenent, G. C., & de Maagd, R. A. (2012) · The Plant Cell · doi:10.1105/tpc.112.103283 · Cited by 336 · see citing works
Lin, Z., Hong, Y., Mingan, Y., et al. (2008) · The Plant Journal · doi:10.1111/j.1365-313x.2008.03505.x · Cited by 335 · see citing works
Pogson, B. J., Niyogi, K., Björkman, O., & DellaPenna, D. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.22.13324 · Cited by 317 · see citing works
Kim, J., & DellaPenna, D. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0511207103 · Cited by 295 · see citing works
Mustilli, A. C., Fenzi, F., Ciliento, R., et al. (1999) · The Plant Cell · doi:10.1105/tpc.11.2.145 · Cited by 284 · see citing works
Zettlmeißl, G., Rudolph, R., & Jaenicke, R. (1979) · Biochemistry · doi:10.1021/bi00592a007 · Cited by 282 · see citing works
Carotenoid accumulation during tomato fruit ripening is modulated by the auxin-ethylene balance
Su, L., Diretto, G., Purgatto, E., et al. (2015) · BMC Plant Biology · doi:10.1186/s12870-015-0495-4 · Cited by 255 · see citing works
Analysis of carotenoid biosynthetic gene expression during marigold petal development
Moehs, C. P., Tian, L., Osteryoung, K. W., & DellaPenna, D. (2001) · Plant Molecular Biology · doi:10.1023/a:1006417009203 · Cited by 252 · see citing works
North, H., de Almeida, A., Boutin, J., Frey, A., To, A., Botran, L., Sotta, B., & Marion‐Poll, A. (2007) · The Plant Journal · doi:10.1111/j.1365-313x.2007.03094.x · Cited by 248 · see citing works
Cloning and Functional Analysis of the β-Carotene Hydroxylase of Arabidopsis thaliana
Sun, Z., Gantt, E., & Cunningham, F. X. (1996) · Journal of Biological Chemistry · doi:10.1074/jbc.271.40.24349 · Cited by 245 · see citing works
Tian, L., Musetti, V., Kim, J., Magallanes‐Lundback, M., & DellaPenna, D. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2237237100 · Cited by 228 · see citing works
Ha, S., Kim, J.-B., Park, J.-S., Lee, S.-W., & Cho, K.-J. (2007) · Journal of Experimental Botany · doi:10.1093/jxb/erm132 · Cited by 226 · see citing works
Chen, Y., Li, F., & Wurtzel, E. T. (2010) · Plant Physiology · doi:10.1104/pp.110.153916 · Cited by 226 · see citing works
Effectiveness of RNA interference in transgenic plants
Kerschen, A., Napoli, C. A., Jorgensen, R. A., et al. (2004) · FEBS Letters · doi:10.1016/j.febslet.2004.04.043 · Cited by 222 · see citing works
Pecker, I., Chamovitz, D., Linden, H., Sandmann, G., & Hirschberg, J. (1992) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.89.11.4962 · Cited by 196 · see citing works
Fujisawa, M., Nakano, T., & Ito, Y. (2011) · BMC Plant Biology · doi:10.1186/1471-2229-11-26 · Cited by 184 · see citing works
Molecular genetics of xanthophyll-dependent photoprotection in green algae and plants
Baroli, I., & Niyogi, K. K. (2000) · Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences · doi:10.1098/rstb.2000.0700 · Cited by 164 · see citing works
Lee, D.-K., Geisler, M., & Springer, P. S. (2009) · Development · doi:10.1242/dev.031971 · Cited by 164 · see citing works
Different Roles of α- and β-Branch Xanthophylls in Photosystem Assembly and Photoprotection
Dall’Osto, L., Fiore, A., Cazzaniga, S., et al. (2007) · Journal of Biological Chemistry · doi:10.1074/jbc.m704729200 · Cited by 154 · see citing works
Bugos, R. C., & Yamamoto, H. Y. (1996) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.93.13.6320 · Cited by 153 · see citing works
Yuan, Y., Sagawa, J. M., Young, R. C., Christensen, B. J., & Bradshaw, H. D. (2013) · Genetics · doi:10.1534/genetics.112.146852 · Cited by 148 · see citing works
Self-citationBartley, G. E., Scolnik, P. A., & Beyer, P. (1999) · European Journal of Biochemistry · doi:10.1046/j.1432-1327.1999.00051.x · Cited by 143 · see citing works
Transcriptional control of floral anthocyanin pigmentation in monkeyflowers ( M imulus)
Yuan, Y., Sagawa, J. M., Frost, L. A., et al. (2014) · New Phytologist · doi:10.1111/nph.12968 · Cited by 129 · see citing works
Self-citationCarotenoid composition and carotenogenic gene expression during Ipomoea petal development
Yamamizo, C., Kishimoto, S., & Ohmiya, A. (2009) · Journal of Experimental Botany · doi:10.1093/jxb/erp335 · Cited by 125 · see citing works
Overexpression of AtMYB52 Confers ABA Hypersensitivity and Drought Tolerance
Park, M. Y., Kang, J., & Kim, S. Y. (2011) · Molecules and Cells · doi:10.1007/s10059-011-0300-7 · Cited by 119 · see citing works
Understanding flowers and flowering: an integrated approach
(2014) · Choice Reviews Online · doi:10.5860/choice.185593 · Cited by 112 · see citing works
Yamagishi, M., Kishimoto, S., & Nakayama, M. (2009) · Plant Breeding · doi:10.1111/j.1439-0523.2009.01656.x · Cited by 109 · see citing works
Bramley, P. M., Teulières, C., Blain, I., Bird, C. R., & Schuch, W. (1992) · The Plant Journal · doi:10.1111/j.1365-313x.1992.00343.x · Cited by 106 · see citing works
Chiou, C., Pan, H.-A., Chuang, Y.-N., & Yeh, K. (2010) · Planta · doi:10.1007/s00425-010-1222-x · Cited by 103 · see citing works
Nutritious crops producing multiple carotenoids – a metabolic balancing act
Farré, G., Bai, C., Twyman, R. M., Capell, T., Christou, P., & Zhu, C. (2011) · Trends in Plant Science · doi:10.1016/j.tplants.2011.08.001 · Cited by 98 · see citing works
Induced mutations affecting pollinator choice in Mimulus lewisii (Phrymaceae)
Owen, C. R., & Bradshaw, H. D. (2011) · Arthropod-Plant Interactions · doi:10.1007/s11829-011-9133-8 · Cited by 63 · see citing works
Yuan, Y., Sagawa, J. M., Stilio, V. S. D., & Bradshaw, H. D. (2013) · Genetics · doi:10.1534/genetics.113.151225 · Cited by 51 · see citing works
Self-citationUnderstanding Flowers and Flowering, Second Edition
Glover, B. J. (2014) · Oxford University Press eBooks · doi:10.1093/acprof:oso/9780199661596.001.0001 · Cited by 51 · see citing works
Transposase concentration controls transposition activity: Myth or reality?
Bire, S., Casteret, S., Arnaoty, A., Piégu, B., Lecomte, T., & Bigot, Y. (2013) · Gene · doi:10.1016/j.gene.2013.08.039 · Cited by 35 · see citing works
Nielsen, K. M., Lewis, D. H., & Morgan, E. R. (2003) · Euphytica · doi:10.1023/a:1022328828688 · Cited by 33 · see citing works
LaFountain, A. M., Frank, H. A., & Yuan, Y. (2015) · Archives of Biochemistry and Biophysics · doi:10.1016/j.abb.2015.03.006 · Cited by 18 · see citing works
Self-citationSystematics of Mimulus subgenus Schizoplacus (Scrophulariaceae)
Thompson, D. M. (2005) · American Society of Plant Taxonomists eBooks · Cited by 16 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Antioxidants from Plants Protect against Skin Photoaging
Petruk, G., Del Giudice, R., Rigano, M. M., & Monti, D. M. (2018) · Oxidative Medicine and Cellular Longevity · doi:10.1155/2018/1454936 · Cited by 283 · see citing works
- Authors
- Sagawa, J. M., Stanley, L. E., LaFountain, A. M., Frank, H. A., Liu, C., & Yuan, Y.
- Affiliations
- University of Connecticut (US)
- Corresponding author
- Yuan, Yao‐Wu
- Venue
- New Phytologist
- Publisher
- Wiley
- Published
- 2015-09-17
- Volume
- 209
- Issue
- 3
- Pages
- 1049-1057
- ISSN
- 0028-646X (ISSN-L)
- 1469-8137
- OpenAlex
- W2095905168
- Cited by
- 190
- References
- 64
- Citations by year
- 2026: 10 · 2025: 22 · 2024: 28 · 2023: 26 · 2022: 21 · 2021: 26 · 2020: 14 · 2019: 15 · 2018: 12 · 2017: 11 · 2016: 4 · 2015: 1
- FWCI
- 4.05
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- New Phytologist (publishedVersion)
- PubMed (publishedVersion)
- Funders
- University of Connecticut
- University of Connecticut Research Foundation
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Plant Gene Expression Analysis
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Plant biochemistry and biosynthesis
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Molecular Biology Research
- Keywords
- R2R3-MYB transcription factor, carotenoid biosynthesis, flower color, Mimulus lewisii, flower development, anthocyanin biosynthesis, transcriptional regulation
- MeSH terms
- Anthocyanins, Carotenoids, Mutation, Pigmentation, Plant Proteins, Transcription Factors, Down-Regulation, Genes, Plant, Gene Expression Regulation, Plant, Plants, Genetically Modified, Mimulus, RNA Interference, Flowers, Biosynthetic Pathways, Genetic Association Studies
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review