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Diverse Plant and Animal Genetic Records from Holocene and Pleistocene Sediments
Abstract
Genetic analyses of permafrost and temperate sediments reveal that plant and animal DNA may be preserved for long periods, even in the absence of obvious macrofossils. In Siberia, five permafrost cores ranging from 400,000 to 10,000 years old contained at least 19 different plant taxa, including the oldest authenticated ancient DNA sequences known, and megafaunal sequences including mammoth, bison, and horse. The genetic data record a number of dramatic changes in the taxonomic diversity and composition of Beringian vegetation and fauna. Temperate cave sediments in New Zealand also yielded DNA sequences of extinct biota, including two species of ratite moa, and 29 plant taxa characteristic of the prehuman environment. Therefore, many sedimentary deposits may contain unique, and widespread, genetic records of paleoenvironments.
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eDNA has provided insights into spatial and temporal distribution of animal species, including extinct hominins, and impact of global climatic change.
“Environmental DNA has also provided insights into the spatial and temporal distribution of animal species, including extinct hominins 49 , and the impact of global climatic change 22,48,90,91,328 .”
From Ancient DNA analysis (2021) · cites this paper as [90]
Early pioneering work successfully retrieved DNA fragments from extinct mammals and birds from only a few grams of Siberian permafrost and New Zealand cave sediments.
“Early pioneering work successfully retrieved DNA fragments from extinct mammals and birds from only a few grams of Siberian permafrost and New Zealand cave sediments 90 .”
From Ancient DNA analysis (2021) · cites this paper as [90]
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Research works printed but not linked: 26
- A. Cooper, H. N. Poinar, Science289, 1139 (2000).
- 10.1016/S0092-8674(00)80310-4 · DOI
- I. Barnes, P. Matheus, B. Shapiro, D. Jensen, A. Cooper, Science295, 2267 (2001).
- 10.1038/35055536 · DOI
- 10.1126/science.281.5375.402 · DOI
- 10.1086/345487 · DOI
- 10.1016/S0169-5347(01)02338-2 · DOI
- 10.1046/j.1523-1739.1998.96351.x · DOI
- M. Richards et al., Am. J. Hum. Genet.59, 185 (1996).
- 10.1086/345378 · DOI
- 10.1073/pnas.96.14.8017 · DOI
- 10.1093/oxfordjournals.molbev.a003800 · DOI
- 10.1007/BF00160310 · DOI
- M. McGlone, N.Z. J. Ecol.25, 1 (2001).
- 10.1073/pnas.92.25.11331 · DOI · Paper page
- 10.1073/pnas.94.14.7362 · DOI
- R. D. Guthrie Frozen Fauna of the Mammoth Steppe: The Story of Blue Babe (Univ. of Chicago Press Chicago IL 1990). · DOI
- 10.1006/qres.1994.1035 · DOI
- M. Hopkins J. V. Matthews Jr. C. E. Schweger S. B. Young Eds. Paleoecology of Beringia (Academic Press New York 1982).
- 10.1126/science.208.4450.1375 · DOI
- P. A. Colinvaux, F. H. West, Quart. Rev. Archaeol.5, 10 (1984).
- 10.1038/382021a0 · DOI
- 10.1016/S0277-3791(00)00127-X · DOI
- 10.1016/S0277-3791(00)00125-6 · DOI
- 10.1038/35072071 · DOI · Paper page
- We thank R. Holdaway T. Worthy and A. Tennyson (Te Papa Tongarewa Museum of New Zealand) for sequences and samples from New Zealand and A. Sher I. Barnes K. Raundrup T. B. Berg M. Andersen B. Jensen and I. Jensen for contemporary and ancient Arctic samples. The manuscript benefited from discussion with the above and A. Currant T. Higham K. Aaris-Sørensen R. Rønn B. Christensen B. Vest Pedersen P. Arctander H. Siegismund O. Humlum P. Hartvig O. Seberg S. Jonasson M. B. Hebsgaard T. Mourier S. Mathiasen A. Drummond D. Froese G. Zazula P. Matheus and C. Schweger. A.C. thanks Victoria University of Wellington G. Chambers and P. Baverstock for helpful assistance with the parrot phylogenetic research. We thank V. Kiel and J. Andersen for technical support in the building of Copenhagen clean lab facilities and the Oxford University Museum of Natural History for providing laboratory facilities in Oxford. E.W. A.J.H. J.B. and T.B.B. were supported by the Villum Kann Rasmussen Fonden Denmark. A.C. M.T.P.G. B.S. and M.B. were supported by the UK National Environmental Research Council and the Wellcome Trust and B.S. was supported by the Rhodes Trust. C.W. was supported by the Carlsberg Foundation and the Medical Research Council UK. D.A.G. was supported by the Russian Foundation for Basic Research grant 01-05-65043.
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Metadata
- Authors
- Willerslev, E., Hansen, A. J., Binladen, J., Brand, T. B., Gilbert, M. T. P., Shapiro, B., Bunce, M., Wiuf, C., Gilichinsky, D. A., & Cooper, A.
- Affiliations
- Department of Evolutionary Biology, Zoological Institute, University of Copenhagen, Universitetsparken 15, Denmark DK-2100 Ø.
- Venue
- Science
- Published
- 2003-05-02
- Volume
- 300
- Issue
- 5620
- Pages
- 791-795
- ISSN
- 0036-8075
- 1095-9203
- Cited by
- 599
- References
- 0
- Language
- en
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