CLIP Identifies Nova-Regulated RNA Networks in the Brain

Ule, Jernej, Jensen, Kirk B., Ruggiu, Matteo, Mele, Aldo, Ule, Aljaž, Darnell, Robert B.·2003·Science
DOI 10.1126/science.1090095

Cited by (1,001)

Items 601–700 of 1,001

  1. Seizure suppression through manipulating splicing of a voltage-gated sodium channel
    Wei‐Hsiang Lin, Miaomiao He, Richard Baines · 2015 · Brain
  2. SSMART: sequence-structure motif identification for RNA-binding proteins
    Alina Munteanu, Neelanjan Mukherjee, Uwe Ohler · 2018 · Bioinformatics
  3. Genome Sequencing and RNA-Motif Analysis Reveal Novel Damaging Noncoding Mutations in Human Tumors
    Babita Singh, Juan L. Trincado, PJ Tatlow, Stephen Piccolo, Eduardo Eyras · 2018 · Molecular Cancer Research
  4. Monitored eCLIP: high accuracy mapping of RNA-protein interactions
    Rémi Hocq, Janio Paternina, Quentin Alasseur, Auguste Genovesio, Hervé Le Hir · 2018 · Nucleic Acids Research
  5. Identification and removal of sequencing artifacts produced by mispriming during reverse transcription in multiple RNA-seq technologies
    Haridha Shivram, Vishwanath R. Iyer · 2018 · RNA
  6. Posttranscriptional Gene Regulation of the GABA Receptor to Control Neuronal Inhibition
    Rico Schieweck, Michael A. Kiebler · 2019 · Frontiers in Molecular Neuroscience
  7. LabxDB: versatile databases for genomic sequencing and lab management
    Charles E. Vejnar, Antonio J. Giráldez · 2020 · Bioinformatics
  8. Cross-Linking Ligation and Sequencing of Hybrids (qCLASH) Reveals an Unpredicted miRNA Targetome in Melanoma Cells
    Ines Kozar, Demetra Philippidou, Christiane Margue, Lauren A. Gay, Rolf Renne, Stephanie Kreis · 2021 · Cancers
  9. A Survey of Current Resources to Study lncRNA-Protein Interactions
    Melcy Philip, Tyrone Chen, Sonika Tyagi · 2021 · Non-Coding RNA
  10. Functional microRNA targetome undergoes degeneration-induced shift in the retina
    Joshua A. Chu‐Tan, Zhi-Ping Feng, Yvette Wooff, Adrian V. Cioanca, Ulrike Schümann, Riemke Aggio‐Bruce, Hardip R. Patel, Matt Rutar, Katherine M. Hannan, Kostya I. Panov et al. · 2021 · Molecular Neurodegeneration
  11. Understanding lncRNA–protein assemblies with imaging and single-molecule approaches
    Jiaquan Liu, Liang-Zhong Yang, Ling‐Ling Chen · 2021 · Current Opinion in Genetics & Development
  12. CLIP and Massively Parallel Functional Analysis of CELF6 Reveal a Role in Destabilizing Synaptic Gene mRNAs through Interaction with 3′ UTR Elements
    Michael A. Rieger, Dana King, Haley W. Crosby, Yating Liu, Barak A. Cohen, Joseph D. Dougherty · 2020 · Cell Reports
  13. Posttranscriptional Generation of Macromolecular Complexes
    Jack D. Keene · 2003 · Molecular Cell
  14. Insulin Receptor Substrate-1 Associates with Small Nucleolar RNA Which Contributes to Ribosome Biogenesis
    Atsufumi Ozoe, Meri Sone, Toshiaki Fukushima, Naoyuki Kataoka, Kazuhiro Chida, Tomoichiro Asano, Fumihiko Hakuno, Shin‐Ichiro Takahashi · 2014 · Frontiers in Endocrinology
  15. Computational identification of tissue-specific alternative splicing elements in mouse genes from RNA-Seq
    Ji Wen, Akira Chiba, Xiaodong Cai · 2010 · Nucleic Acids Research
  16. Post-transcriptional controls – adding a new layer of regulation to clock gene expression
    Marie Cibois, Carole Gautier‐Courteille, Vincent Legagneux, Luc Paillard · 2010 · Trends in Cell Biology
  17. A high-throughput pipeline for the production of synthetic antibodies for analysis of ribonucleoprotein complexes
    Hong Na, John D. Laver, Jouhyun Jeon, Fateh Singh, Kristin Ancevicius, Yujie Fan, Wen Xi Cao, Kun Nie, Zhenglin Yang, Hua Luo et al. · 2016 · RNA
  18. A General Small-Angle X-ray Scattering-Based Screening Protocol Validated for Protein–RNA Interactions
    Po‐Chia Chen, Paweł Masiewicz, Vladimir Rybin, Dmitri I. Svergun, Janosch Hennig · 2018 · ACS Combinatorial Science
  19. RNA-centric approaches to study RNA-protein interactions in vitro and in silico
    Alessandro Dasti, Fernando Cid-Samper, Elías Bechara, Gian Gaetano Tartaglia · 2019 · Methods
  20. NANOS2 is a sequence-specific mRNA-binding protein that promotes transcript degradation in spermatogonial stem cells
    Azzurra Codino, Tomasz W. Turowski, Louie N. van de Lagemaat, Ivayla Ivanova, Andrea Tavosanis, Christian Much, Tania Auchynnikava, Lina Vasiliauskaitė, Marcos Morgan, Juri Rappsilber et al. · 2021 · iScience
  21. Polypyrimidine Tract-Binding Protein 2 Binds to Selective, Intronic Messenger RNA and MicroRNA Targets in the Mouse Testis
    Mingang Xu, Norman B. Hecht · 2010 · Biology of Reproduction
  22. Profiling the Binding Sites of RNA-Binding Proteins with Nucleotide Resolution Using iCLIP
    F.X. Reymond Sutandy, Andrea Hildebrandt, Julian König · 2015 · Methods in molecular biology
  23. Quantitative biology of single neurons
    James H. Eberwine, Ditte Lovatt, Peter T. Buckley, Hannah Dueck, Chantal Francis, Tae Kyung Kim, Jaehee Lee, Miler T. Lee, Kevin Miyashiro, Jacqueline F. Morris et al. · 2012 · Journal of The Royal Society Interface
  24. NOVA1 acts on Impact to regulate hypothalamic function and translation in inhibitory neurons
    Yoko Tajima, Keiichi Ito, Yuan Yuan, Mayu O. Frank, Yuhki Saito, Robert B. Darnell · 2023 · Cell Reports
  25. Recent advances in the study of Kaposi’s sarcoma-associated herpesvirus replication and pathogenesis
    Denis R. Avey, Brittany Brewers, Fanxiu Zhu · 2015 · Virologica Sinica
  26. Synthetic antibodies as tools to probe RNA-binding protein function
    John D Laver, Kristin Ancevicius, Pietro Sollazzo, J. Timothy Westwood, Sachdev S. Sidhu, Howard D. Lipshitz, Craig A. Smibert · 2012 · Molecular BioSystems
  27. TDP-43 and NOVA-1 RNA-binding proteins as competitive splicing regulators of the schizophrenia-associated TNIK gene
    Valentina Gumina, Claudia Colombrita, Claudia Fallini, Patrizia Bossolasco, AnnaMaria Maraschi, John E. Landers, Vincenzo Silani, Antonia Ratti · 2019 · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms
  28. Non-coding antisense transcripts: fine regulation of gene expression in cancer
    Francisco dos Santos, Ana Maria Capela, Francisca Cazaux Mateus, Sandrina Nóbrega Pereira, Bruno Bernardes de Jesus · 2022 · Computational and Structural Biotechnology Journal
  29. A Sam68‐dependent alternative splicing program shapes postsynaptic protein complexes
    Harald Witte, Dietmar Schreiner, Peter Scheiffele · 2018 · European Journal of Neuroscience
  30. Isoform characterization of m6A in single cells identifies its role in RNA surveillance
    Zhijun Ren, Jialiang He, Xiang Huang, Yan Ping Gao, Chuan‐Chuan Wei, Zehong Wu, Wenbing Guo, Feng Wang, Qingquan Zhao, Xiang Sun et al. · 2025 · Nature Communications
  31. CisBP-RNA: a web resource for eukaryotic RNA-binding proteins and their motifs
    Diego A. Rosado‐Tristani, Mihai Albu, Xiaoting Chen, Alexander Sasse, Kaitlin U. Laverty, Debashish Ray, Cyrus L. Tam, Kevin Ernst, Lucinda P. Lawson, Quaid Morris et al. · 2025 · Nucleic Acids Research
  32. STAU2 binds a complex RNA cargo that changes temporally with production of diverse intermediate progenitor cells during mouse corticogenesis
    Rebecca Chowdhury, Yue Wang, Melissa Campbell, Susan K. Goderie, Francis Doyle, Scott A. Tenenbaum, Gretchen Kusek, Thomas R. Kiehl, Suraiya Anjum Ansari, Nathan C. Boles et al. · 2021 · Development
  33. MAPP unravels frequent co-regulation of splicing and polyadenylation by RNA-binding proteins and their dysregulation in cancer
    Maciej Bąk, Erik van Nimwegen, Ivan U. Kouzel, Tamer Gür, Ralf L. J. Schmidt, Mihaela Zavolan, Andreas J Gruber · 2024 · Nature Communications
  34. Experimental and Computational Considerations in the Study of RNA-Binding Protein-RNA Interactions
    Eric L. Van Nostrand, Stephanie C. Huelga, Gene Wei-Ming Yeo · 2016 · Advances in experimental medicine and biology
  35. The devil is in the domain: understanding protein recognition of multiple RNA targets
    Glen R. Gronland, Andres Ramos · 2017 · Biochemical Society Transactions
  36. Epitranscriptomic technologies and analyses
    Xiaoyu Li, Liang‐Hu Qu, Jinran Lin, Jinying Peng, Jianhua Yang, Chengqi Yi, Yang Yu, Qiangfeng Cliff Zhang, Keren Zhou · 2020 · Science China Life Sciences
  37. Long noncoding RNAs: from identification to functions and mechanisms
    Maite Huarte, Oskar Marín-Béjar · 2015 · Advances in Genomics and Genetics
  38. Deletion of AU-Rich Elements within the Bcl2 3′UTR Reduces Protein Expression and B Cell Survival In Vivo
    Manuel D. Díaz‐Muñoz, Sarah E. Bell, Martin Turner · 2015 · PLoS ONE
  39. Biological and bioinformatical approaches to study crosstalk of long-non-coding RNAs and chromatin-modifying proteins
    Rolf Backofen, Tanja Vogel · 2014 · Cell and Tissue Research
  40. From specific to global analysis of posttranscriptional regulation in eukaryotes: posttranscriptional regulatory networks
    Sarath Chandra Janga · 2012 · Briefings in Functional Genomics
  41. Polypyrimidine tract‐binding protein binds to the 5′ untranslated region of the mouse mammary tumor virus mRNA and stimulates cap‐independent translation initiation
    C. Joaquín Cáceres, Nataly Contreras, Jenniffer Angulo, Jorge Vera‐Otarola, Constanza Pino Ajenjo, Miriam Llorian, Mélissa Ameur, Francisco Lisboa, Karla Pino, Fernando Lowy et al. · 2016 · FEBS Journal
  42. RNA-binding proteins and neural development: a matter of targets and complexes
    François Agnès, Muriel Perron · 2004 · Neuroreport
  43. The C2H2 zinc-finger protein SYD-9 is a putative posttranscriptional regulator for synaptic transmission
    Ying Wang, Elena O. Gracheva, Janet E. Richmond, Taizo Kawano, Jillian M. Couto, John A. Calarco, Vijhee Vijayaratnam, Yishi Jin, Mei Zhen · 2006 · Proceedings of the National Academy of Sciences
  44. FMRP binding to a ranked subset of long genes is revealed by coupled CLIP and TRAP in specific neuronal cell types
    Sarah J. Van Driesche, Kirsty Sawicka, Chaolin Zhang, Ka Ying Sharon Hung, Christopher Y. Park, John J. Fak, Chingwen Yang, Robert B. Darnell, Jennifer C. Darnell · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
  45. Cell-Specific RNA Binding Protein Rbfox2 Regulates CaV2.2 mRNA Exon Composition and CaV2.2 Current Size
    Allen, Summer E., Toro, Cecilia P., Andrade, Arturo, López-Soto, Eduardo J., Denome, Sylvia, Lipscombe, Diane · 2017 · eneuro
  46. Genome-wide profiling of rice Double-stranded RNA-Binding Protein 1–associated RNAs by targeted RNA editing
    Shuai Yin, Yuedan Chen, Yache Chen, Lizhong Xiong, Kabin Xie · 2023 · PLANT PHYSIOLOGY
  47. Blom7α Is a Novel Heterogeneous Nuclear Ribonucleoprotein K Homology Domain Protein Involved in Pre-mRNA Splicing That Interacts with SNEVPrp19-Pso4
    Johannes Grillari, Marlies Löscher, Marco Denegri, Kiseok Lee, Klaus Fortschegger, Frank Eisenhaber, Paul Ajuh, Angus I. Lamond, Hermann W. D. Katinger, Regina Grillari‐Voglauer · 2009 · Journal of Biological Chemistry
  48. Musashi mediates translational repression of theDrosophilahypoxia inducible factor
    Agustina P. Bertolin, Maximiliano J. Katz, Masato Yano, Berta Pozzi, Julieta M. Acevedo, Dalmiro Blanco-Obregon, Lautaro Gándara, Eleonora Mariana Sorianello, Hiroshi Kanda, Hideyuki Okano et al. · 2016 · Nucleic Acids Research
  49. XenopusPiwi proteins interact with a broad proportion of the oocyte transcriptome
    James A. Toombs, Yuliya A. Sytnikova, Gung‐Wei Chirn, Ignatius Wei Shawn Ang, Nelson C. Lau, Michael D. Blower · 2016 · RNA
  50. Faulty RNA splicing: consequences and therapeutic opportunities in brain and muscle disorders
    Vittoria Pagliarini, Piergiorgio La Rosa, Claudio Sette · 2017 · Human Genetics
  51. Mex-3B induces apoptosis by inhibiting miR-92a access to the Bim-3′UTR
    Takeaki Oda, Yusuke Yamazumi, Takatoshi Hiroko, Atsushi Kamiya, Saori Kiriya, Saki Suyama, Yumi Shiozaki-Sato, Tetsu Akiyama · 2018 · Oncogene
  52. Screening protein – Single stranded RNA complexes by NMR spectroscopy for structure determination
    Jaelle N. Foot, Mikaël Feracci, Cyril Dominguez · 2013 · Methods
  53. RNA-binding protein research with transcriptome-wide technologies in neural development
    Masato Yano, Takafumi Ohtsuka, Hideyuki Okano · 2014 · Cell and Tissue Research
  54. Transferrin receptor mRNA interactions contributing to iron homeostasis
    Dhwani N. Rupani, Gregory J. Connell · 2016 · RNA
  55. DO-RIP-seq to quantify RNA binding sites transcriptome-wide
    Cindo O. Nicholson, Matthew B. Friedersdorf, Laura Simone Bisogno, Jack D. Keene · 2016 · Methods
  56. The tyrosine kinase receptor Tyro3 enhances lifespan and neuropeptide Y (Npy) neuron survival in the mouseanorexia(anx) mutation
    Dennis Y. Kim, Joanna Yu, Ryan K. Mui, Rieko Niibori, Hamza Bin Taufique, Rukhsana Aslam, John W. Semple, Sabine P. Cordes · 2017 · Disease Models & Mechanisms
  57. Hybrid splicing minigene and antisense oligonucleotides as efficient tools to determine functional protein/RNA interactions
    Piotr Cywoniuk, Katarzyna Taylor, Łukasz J. Sznajder, Krzysztof Sobczak · 2017 · Scientific Reports
  58. Zooming in on protein–RNA interactions: a multi-level workflow to identify interaction partners
    Alessio Colantoni, Jakob Rupert, Andrea Vandelli, Gian Gaetano Tartaglia, Elsa Zacco · 2020 · Biochemical Society Transactions
  59. Methods to study the RNA-protein interactions
    Varvara V. Popova, М. М. Куршакова, Daria V. Kopytova · 2015 · Molecular Biology
  60. Dysregulated RNA-binding proteins and alternative splicing: Emerging roles in autism spectrum disorder
    Jiwon Jeong, Hee Jeong Yoo, Joon‐Yong An, S Jeong-Yu · 2025 · Molecules and Cells
  61. CLIP and complementary methods
    2021 · Nature Reviews Methods Primers
  62. Recent Deep Learning Methodology Development for RNA–RNA Interaction Prediction
    Yi Fang, Xiaoyong Pan, Hong‐Bin Shen · 2022 · Symmetry
  63. A comprehensive thermodynamic model for RNA binding by the Saccharomyces cerevisiae Pumilio protein PUF4
    Christoph Sadée, Lauren D. Hagler, Winston R. Becker, Inga Jarmoskaite, Pavanapuresan P. Vaidyanathan, Sarah K. Denny, William James Greenleaf, Daniel Herschlag · 2022 · Nature Communications
  64. Imaging and Tracking RNA in Live Mammalian Cells via Fluorogenic Photoaffinity Labeling
    Alexandria L. Quillin, Diane B. Karloff, Tewoderos M. Ayele, Tatiana F. Flores, Gerry Chen, Zachary T. McEachin, Arielle N. Valdez‐Sinon, Jennifer M. Heemstra · 2025 · ACS Chemical Biology
  65. Alternative Polyadenylation in Glioblastoma Multiforme and Changes in Predicted RNA Binding Protein Profiles
    Jiaofang Shao, Jing Zhang, Zengming Zhang, Huawei Jiang, Xiaoyan Lou, Bingding Huang, Greg Foltz, Qing Lan, Qiang Huang, Biaoyang Lin · 2013 · OMICS A Journal of Integrative Biology
  66. Computational challenges, tools, and resources for analyzing co‐ and post‐transcriptional events in high throughput
    Emad Bahrami‐Samani, Dat T. Vo, Patricia Rosa De Araujo, Christine Vogel, Andrew D. Smith, Luiz O. F. Penalva, Philip J. Uren · 2014 · Wiley Interdisciplinary Reviews - RNA
  67. Disabled-1 Alternative Splicing in Human Fetal Retina and Neural Tumors
    Sachin Katyal, Darryl D. Glubrecht, Lei Li, Zhihua Gao, Roseline Godbout · 2011 · PLoS ONE
  68. Pinpointing RNA-Protein Cross-Links with Site-Specific Stable Isotope-Labeled Oligonucleotides
    Victor S. Lelyveld, Anders Björkbom, Elizabeth Ransey, Piotr Sliz A, Jack W. Szostak · 2015 · Journal of the American Chemical Society
  69. Proximity labeling to detect RNA–protein interactions in live cells
    Mingxing Lu, Wencheng Wei · 2019 · FEBS Open Bio
  70. De novo truncating NOVA2 variants affect alternative splicing and lead to heterogeneous neurodevelopmental phenotypes
    Marcello Scala, Nathalie Drouot, Suzanna C. MacLennan, Marja W. Wessels, Magdalena Krygier, Lisa Pavinato, Aida Bytyci Telegrafi, Robert A de Man, Marjon van Slegtenhorst, Michele Iacomino et al. · 2022 · Human Mutation
  71. Predicting N6-Methyladenosine Sites in Multiple Tissues of Mammals through Ensemble Deep Learning
    Zhengtao Luo, Liliang Lou, Wang‐Ren Qiu, Zhaochun Xu, Xuan Xiao · 2022 · International Journal of Molecular Sciences
  72. Nova-1 Mediates Glucocorticoid-induced Inhibition of Pre-mRNA Splicing of Gonadotropin-releasing Hormone Transcripts
    Eonyoung Park, Mi Sun Lee, Sun Mi Baik, Eun Bee Cho, Gi Hoon Son, Jae Young Seong, Kun Ho Lee, Kyungjin Kim · 2009 · Journal of Biological Chemistry
  73. Guardian of Genetic Messenger-RNA-Binding Proteins
    Antje Anji, Meena Kumari · 2016 · Biomolecules
  74. Identifying RBP Targets with RIP-seq
    Hans‐Hermann Wessels, Antje Hirsekorn, Uwe Ohler, Neelanjan Mukherjee · 2015 · Methods in molecular biology
  75. Evidence Favoring a Positive Feedback Loop for Physiologic Auto Upregulation of hnRNP-E1 during Prolonged Folate Deficiency in Human Placental Cells
    Ying-Sheng Tang, Rehana A. Khan, Suhong Xiao, Deborah K. Hansen, Sally P. Stabler, Praveen Kusumanchi, Hiremagalur N. Jayaram, Asok C. Antony · 2017 · Journal of Nutrition
  76. Post-transcriptional regulation in planarian stem cells
    Srikar Krishna Gopinath, Dasaradhi Palakodeti, Jordi Solana · 2018 · Seminars in Cell and Developmental Biology
  77. Localization elements and zip codes in the intracellular transport and localization of messenger RNAs in Saccharomyces cerevisiae
    Anusha Chaudhuri, Subhadeep Das, Biswadip Das · 2020 · Wiley Interdisciplinary Reviews - RNA
  78. RNA Processing: Redrawing the Map of Charted Territory
    Anna Corrionero, Juan Valcárcel · 2009 · Molecular Cell
  79. RNA-binding protein Rbm47 binds to Nanog in mouse embryonic stem cells
    Meghdad Yeganeh, Ehsan Seyedjafari, Farnaz Akbari Kamrani, Nasser Ghaemi · 2013 · Molecular Biology Reports
  80. Biochemical and bioinformatic methods for elucidating the role of RNA–protein interactions in posttranscriptional regulation
    Andreas Kloetgen, Philipp C. Münch, Arndt Borkhardt, Jessica I. Hoell, Alice Carolyn McHardy · 2014 · Briefings in Functional Genomics
  81. Interfaces with Structure Dynamics of the Workhorses from Cells Revealed through Cross-Linking Mass Spectrometry (CLMS)
    Umesh Kalathiya, Monikaben Padariya, Jakub Faktor, Étienne Coyaud, Javier A. Alfaro, Robin Fåhræus, Ted R. Hupp, David R. Goodlett · 2021 · Biomolecules
  82. Cooperative engagement and subsequent selective displacement of SR proteins define the pre-mRNA 3D structural scaffold for early spliceosome assembly
    Kaushik Saha, Gourisankar Ghosh · 2022 · Nucleic Acids Research
  83. Functional Relationships between Long Non-Coding RNAs and Estrogen Receptor Alpha: A New Frontier in Hormone-Responsive Breast Cancer Management
    Viola Melone, Annamaria Salvati, Noemi Brusco, Elena Alexandrova, Ylenia D’Agostino, Domenico Palumbo, Luigi Palo, Ilaria Terenzi, Giovanni Nassa, Francesca Maria Rizzo et al. · 2023 · International Journal of Molecular Sciences
  84. The RIPper Case: Identification of RNA-Binding Protein Targets by RNA Immunoprecipitation
    Tino Köster, Meike Haas, Dorothee Staiger · 2014 · Methods in molecular biology
  85. Electrophoretic Mobility Shift Assay: Analyzing Protein - Nucleic Acid Interactions
    Carolina Alves, Celso Cunh · 2012 · InTech eBooks
  86. Ribonucleoprotein localization in mouse oocytes
    Matyáš Flemr, Petr Svoboda · 2010 · Methods
  87. Dissecting Regulatory Networks in Host-Pathogen Interaction Using ChIP-on-chip Technology
    Claudia Sala, David C. Grainger, Stewart Thomas Cole · 2009 · Cell Host & Microbe
  88. Identification of miRNA-Target RNA Interactions Using CLASH
    Aleksandra Helwak, David W. Tollervey · 2015 · Methods in molecular biology
  89. CLIP-related methodologies and their application to retrovirology
    Paul D. Bieniasz, Sebla B. Kutluay · 2018 · Retrovirology
  90. Deterministic splicing of Dscam2 is regulated by Muscleblind
    Joshua Shing Shun Li, S. Sean Millard · 2019 · Science Advances
  91. miRBind: A Deep Learning Method for miRNA Binding Classification
    Eva Klimentová, Václav Hejret, Ján Krčmář, Katarína Grešová, Ilektra‐Chara Giassa, Panagiotis Alexiou · 2022 · Genes
  92. nf-core/clipseq - a robust Nextflow pipeline for comprehensive CLIP data analysis
    Charlotte West, Charlotte Capitanchik, Chris Cheshire, Nicholas M. Luscombe, Anob M. Chakrabarti, Jernej Ule · 2023 · Wellcome Open Research
  93. Revealing the hidden RBP – RNA interactions with RNA modification enzyme‐based strategies
    Hua Jin, Chong Li, Yunxiao Jia, Yuxuan Qi, Weilan Piao · 2024 · Wiley Interdisciplinary Reviews - RNA
  94. Enhanced Crosslinking Immunoprecipitation (eCLIP) Method for Efficient Identification of Protein-bound RNA in Mouse Testis
    Qiushi Xu, Cai‐Feng Wang, Ling Li, Qiuling Yue, Mengrou Liu, Shuya Zhang, Kaiqiang Fu, Lan Ye, Ke Zheng · 2019 · Journal of Visualized Experiments
  95. Next-generation sequencing: A new avenue to understand viral RNA–protein interactions
    Yiyang Zhou, Stephanea L. Sotcheff, Andrew L. Routh · 2022 · Journal of Biological Chemistry
  96. The emerging roles of N6-methyladenosine (m6A)-modified long non-coding RNAs in human cancers
    Jingwen Liu, Wei Zhao, Leyu Zhang, Xi Wang · 2022 · Cell Death Discovery
  97. Approaches for Modes of Action Study of Long Non-Coding RNAs: From Single Verification to Genome-Wide Determination
    Xiaoyuan Tao, Sujuan Li, Guang Chen, Jian Wang, Shengchun Xu · 2023 · International Journal of Molecular Sciences
  98. In vivo PAR-CLIP (viP-CLIP) of liver TIAL1 unveils targets regulating cholesterol synthesis and secretion
    Hasan Vatandaslar, Aitor Garzia, Cindy Meyer, Svenja Godbersen, Laura T. L. Brandt, Esther Griesbach, Jeffrey A. Chao, Thomas Tuschl, Markus Stoffel · 2023 · Nature Communications
  99. Canadian Association of Neurosciences Review: Polyglutamine Expansion Neurodegenerative Diseases
    Ray Truant, Lynn A. Raymond, Jianrun Xia, Deborah Pinchev, Anjee Burtnik, Randy Singh Atwal · 2006 · Canadian Journal of Neurological Sciences / Journal Canadien des Sciences Neurologiques
  100. Dissecting the target specificity of RNase H recruiting oligonucleotides using massively parallel reporter analysis of short RNA motifs
    Jakob Lewin Rukov, Peter Hagedorn, Isabel Bro Høy, Yanping Feng, Morten Lindow, Jeppe Vinther · 2015 · Nucleic Acids Research