CLIP Identifies Nova-Regulated RNA Networks in the Brain

Mechanisms of Alternative Pre-Messenger RNA Splicing

Black, D. L. (2003) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.72.121801.161720 · Cited by 2,704

Selective interaction of JNK protein kinase isoforms with transcription factors.

Gupta, S., Barrett, T., Whitmarsh, A. J., Cavanagh, J., Sluss, H. K., Dérijard, B., & Davis, R. J. (1996) · The EMBO Journal · doi:10.1002/j.1460-2075.1996.tb00636.x · Cited by 1,341

Antibodies to small nuclear RNAs complexed with proteins are produced by patients with systemic lupus erythematosus

Lerner, M. R., & STEITZ, J. A. (1979) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.76.11.5495 · Cited by 1,157

Microarray identification of FMRP-associated brain mRNAs and altered mRNA translational profiles in fragile X syndrome

Brown, V., Jin, P., Ceman, S., Darnell, J. C., O'Donnell, W. T., Tenenbaum, S. A., Jin, X., Feng, Y., Wilkinson, K. D., Keene, J. D., et al. (2001) · Cell · doi:10.1016/s0092-8674(01)00568-2 · Cited by 1,109

Deleted in Colorectal Cancer (DCC) encodes a netrin receptor.

Keino-Masu, K., Masu, M., Hinck, L., Leonardo, E., Chan, S., Culotti, J., & Tessier-Lavigne, M. (1996) · Cell · doi:10.1016/s0092-8674(00)81336-7 · Cited by 1,048

Fragile X mental retardation protein targets G quartet mRNAs important for neuronal function

Darnell, J. C., Jensen, K. B., Jin, P., Brown, V., Warren, S. T., & Darnell, R. B. (2001) · Cell · doi:10.1016/s0092-8674(01)00566-9 · Cited by 952

G Protein-Coupled Inwardly Rectifying K+ Channels (GIRKs) Mediate Postsynaptic but Not Presynaptic Transmitter Actions in Hippocampal Neurons

Lüscher, C., Jan, L. Y., Stoffel, M., Malenka, R. C., & Nicoll, R. A. (1997) · Neuron · doi:10.1016/s0896-6273(00)80381-5 · Cited by 762

Autoantibodies in the diagnosis of systemicrheumatic diseases

von Mühlen, C. A., & Tan, E. M. (1995) · Seminars in Arthritis and Rheumatism · doi:10.1016/s0049-0172(95)80004-2 · Cited by 546

RNA cargoes associating with FMRP reveal deficits in cellular functioning in Fmr1 null mice

Miyashiro, K. Y., Beckel-Mitchener, A., Purk, T. P., Becker, K. G., Barret, T., Liu, L., Carbonetto, S., Weiler, I. J., Greenough, W. T., & Eberwine, J. (2003) · Neuron · doi:10.1016/s0896-6273(03)00034-5 · Cited by 495

Loss of Postsynaptic GABAAReceptor Clustering in Gephyrin-Deficient Mice

Kneussel, M., Brandstätter, J. H., Laube, B., Stahl, S., Müller, U., & Betz, H. (1999) · Journal of Neuroscience · doi:10.1523/jneurosci.19-21-09289.1999 · Cited by 446

Cross-Linking Immunoprecipitation and qPCR (CLIP-qPCR) Analysis to Map Interactions Between Long Noncoding RNAs and RNA-Binding Proteins

Yoon, J., & Gorospe, M. (2015) · Methods in molecular biology · doi:10.1007/978-1-4939-3378-5_2 · Cited by 48

The increasing diversity of functions attributed to the SAFB family of RNA-/DNA-binding proteins

Norman, M., Rivers, C. A., Lee, Y., Idris, J., & Uney, J. B. (2016) · Biochemical Journal · doi:10.1042/bcj20160649 · Cited by 48

Computational analysis of CLIP-seq data

Uhl, M., Houwaart, T., Corrado, G., Wright, P. R., & Backofen, R. (2017) · Methods · doi:10.1016/j.ymeth.2017.02.006 · Cited by 50

Evidence for mi RNA ‐mediated modulation of the host transcriptome in cnidarian–dinoflagellate symbiosis

Baumgarten, S., Cziesielski, M. J., Thomas, L. A., Michell, C., Esherick, L. Y., Pringle, J. R., Aranda, M., & Voolstra, C. R. (2017) · Molecular Ecology · doi:10.1111/mec.14452 · Cited by 48

Decoding LncRNAs

Borkiewicz, L., Kałafut, J., Dudziak, K., Przybyszewska-Podstawka, A., & Telejko, I. (2021) · Cancers · doi:10.3390/cancers13112643 · Cited by 48

A non-radioactive, improved PAR-CLIP and small RNA cDNA library preparation protocol

Anastasakis, D. G., Jacob, A., Κωνσταντινίδου, Π., Meguro, K., Claypool, D. J., Čekan, P., Haase, A. D., & Hafner, M. (2021) · Nucleic Acids Research · doi:10.1093/nar/gkab011 · Cited by 47

Genome-Wide Approaches to Dissect the Roles of RNA Binding Proteins in Translational Control: Implications for Neurological Diseases

Kapeli, K., & Yeo, G. W.-M. (2012) · Frontiers in Neuroscience · doi:10.3389/fnins.2012.00144 · Cited by 50

Neurodegeneration and RNA ‐binding proteins

Conti, L. D., Baralle, M., & Buratti, E. (2016) · Wiley Interdisciplinary Reviews - RNA · doi:10.1002/wrna.1394 · Cited by 51

Identification of RNA-binding proteins that regulate FGFR2 splicing through the use of sensitive and specific dual color fluorescence minigene assays

Newman, E. A., Muh, S. J., Hovhannisyan, R. H., Warzecha, C. C., Jones, R. B., McKeehan, W. L., & Carstens, R. P. (2006) · RNA · doi:10.1261/rna.34906 · Cited by 49

A protocol for PAIR: PNA-assisted identification of RNA binding proteins in living cells

Zeng, F., Peritz, T., Kannanayakal, T. J., Kilk, K., Eiríksdóttir, E., Langel, Ü., & Eberwine, J. H. (2006) · Nature Protocols · doi:10.1038/nprot.2006.81 · Cited by 46

Using RNase sequence specificity to refine the identification of RNA-protein binding regions

Wang, X., Wang, G., Shen, C., Li, L., Wang, X., Mooney, S. D., Edenberg, H. J., Sanford, J. R., & Liu, Y. (2008) · BMC Genomics · doi:10.1186/1471-2164-9-s1-s17 · Cited by 46

RNase-assisted RNA chromatography

Michlewski, G., & Cáceres, J. F. (2010) · RNA · doi:10.1261/rna.2136010 · Cited by 46

Stimulation of pri-miR-18a Processing by hnRNP A1

Michlewski, G., Guil, S., & Cáceres, J. F. (2010) · Advances in experimental medicine and biology · doi:10.1007/978-1-4419-7823-3_3 · Cited by 48

Identification of targets of tumor suppressor microRNA-34a using a reporter library system

Ito, Y., Inoue, A., Seers, T., Hato, Y., Igarashi, A., Toyama, T., Taganov, K. D., Boldin, M., & Asahara, H. (2017) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1620019114 · Cited by 46

Genome-Wide Analysis of RNA-Protein Interactions in Plants

Barkan, A. (2009) · Methods in molecular biology · doi:10.1007/978-1-60327-563-7_2 · Cited by 46

Widespread intron retention impairs protein homeostasis in C9orf72 ALS brainsPreprint

Wang, Q., Conlon, E. G., Manley, J. L., & Rio, D. C. (2020) · Genome Research · doi:10.1101/gr.265298.120 · Cited by 49

RNA Regulation in Neurologic Disease and Cancer

Darnell, R. B. (2010) · Cancer Research and Treatment · doi:10.4143/crt.2010.42.3.125 · Cited by 45

Improvements to the HITS-CLIP protocol eliminate widespread mispriming artifacts

Gillen, A. E., Yamamoto, T. M., Kline, E. C., Hesselberth, J. R., & Kabos, P. (2016) · BMC Genomics · doi:10.1186/s12864-016-2675-5 · Cited by 45

Tethered Function Assays as Tools to Elucidate the Molecular Roles of RNA-Binding Proteins

Bos, T. J., Nussbacher, J. K., Aigner, S., & Yeo, G. W.-M. (2016) · Advances in experimental medicine and biology · doi:10.1007/978-3-319-29073-7_3 · Cited by 47

Proteomic Characterization of Messenger Ribonucleoprotein Complexes Bound to Nontranslated or Translated Poly(A) mRNAs in the Rat Cerebral Cortex

Angenstein, F., Evans, A. M., Ling, S., Settlage, R. E., Ficarro, S. B., Carrero-Martínez, F. A., Shabanowitz, J., Hunt, D. F., & Greenough, W. T. (2005) · Journal of Biological Chemistry · doi:10.1074/jbc.m412742200 · Cited by 45

Directional mRNA transport in eukaryotes: lessons from yeast

Müller, M., Heuck, A., & Niessing, D. (2006) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-006-6286-1 · Cited by 45

fus/TLS orchestrates splicing of developmental regulators during gastrulationPreprint

Dichmann, D. S., & Harland, R. M. (2012) · Genes & Development · doi:10.1101/gad.187278.112 · Cited by 45

Integration of a splicing regulatory network within the meiotic gene expression program of Saccharomyces cerevisiaePreprint

Munding, E. M., Igel, A. H., Shiue, L., Dorighi, K. M., Treviño, L. R., & Ares, M. (2010) · Genes & Development · doi:10.1101/gad.1977410 · Cited by 47

Shaping the Innate Immune Response Through Post-Transcriptional Regulation of Gene Expression Mediated by RNA-Binding Proteins

Guillemin, A., Kumar, A., Wencker, M., & Ricci, E. P. (2022) · Frontiers in Immunology · doi:10.3389/fimmu.2021.796012 · Cited by 48

Microtubule-Dependent mRNA Transport in Fungi

Zarnack, K., & Feldbrügge, M. (2010) · Eukaryotic Cell · doi:10.1128/ec.00030-10 · Cited by 46

Integrative Structural Biology of Protein-RNA Complexes

Dimitrova-Paternoga, L., Jagtap, P. K. A., Chen, P., & Hennig, J. (2019) · Structure · doi:10.1016/j.str.2019.11.017 · Cited by 44

ELAV/Hu RNA binding proteins determine multiple programs of neural alternative splicing

Lee, S., Wei, L., Zhang, B., Goering, R., Majumdar, S., Wen, J., Taliaferro, J. M., & Lai, E. C. (2021) · PLoS Genetics · doi:10.1371/journal.pgen.1009439 · Cited by 46

Ribonomic approaches to study the RNA‐binding proteome

Faoro, C., & Ataide, S. F. (2014) · FEBS Letters · doi:10.1016/j.febslet.2014.07.039 · Cited by 44

RIP-seq analysis of eukaryotic Sm proteins identifies three major categories of Sm-containing ribonucleoproteins

Lu, Z., Guan, X., Schmidt, C. A., & Matera, A. G. (2014) · Genome biology · doi:10.1186/gb-2014-15-1-r7 · Cited by 46

Aberrant splicing in neurological diseases

Feng, D., & Xie, J. (2013) · Wiley Interdisciplinary Reviews - RNA · doi:10.1002/wrna.1184 · Cited by 44

The essential polysome-associated RNA-binding protein RBP42 targets mRNAs involved in Trypanosoma brucei energy metabolism

Das, A., Morales, R., Banday, M., Garcia, S. A., Li, H., Cross, G., Estévez, A. M., & Bellofatto, V. (2012) · RNA · doi:10.1261/rna.033829.112 · Cited by 45

A stress‐induced tyrosine‐tRNA depletion response mediates codon‐based translational repression and growth suppression

Huh, D., Passarelli, M. C., Gao, J., Dusmatova, S. N., Goin, C., Fish, L., Pinzaru, A. M., Molina, H., Ren, Z., McMillan, E. A., et al. (2020) · The EMBO Journal · doi:10.15252/embj.2020106696 · Cited by 47

Alternative splicing interference by xenobiotics

Zaharieva, E. E., Chipman, J. K., & Soller, M. (2012) · Toxicology · doi:10.1016/j.tox.2012.01.014 · Cited by 46

Open brain gene product Rab23: Expression pattern in the adult mouse brain and functional characterization

Guo, A., Wang, T., Ng, E. L., Aulia, S., Chong, K. H., Teng, F. Y. H., Wang, Y., & Tang, B. L. (2006) · Journal of Neuroscience Research · doi:10.1002/jnr.20788 · Cited by 43

From computational models of the splicing code to regulatory mechanisms and therapeutic implications

Capitanchik, C., Wilkins, O. G., Wagner, N., Gagneur, J., & Ule, J. (2024) · Nature Reviews Genetics · doi:10.1038/s41576-024-00774-2 · Cited by 45

Cis-Acting Polymorphisms Affect Complex Traits through Modifications of MicroRNA Regulation Pathways

Arnold, M., Ellwanger, D. C., Hartsperger, M. L., Pfeufer, A., & Stümpflen, V. (2012) · PLoS ONE · doi:10.1371/journal.pone.0036694 · Cited by 44

Single and Combined Methods to Specifically or Bulk-Purify RNA–Protein Complexes

Ende, R. V., Balzarini, S., & Geuten, K. P. (2020) · Biomolecules · doi:10.3390/biom10081160 · Cited by 41

Roadblocks and fast tracks: How RNA binding proteins affect the viral RNA journey in the cell

Girardi, E., Pfeffer, S., Baumert, T. F., & Majzoub, K. (2020) · Seminars in Cell and Developmental Biology · doi:10.1016/j.semcdb.2020.08.006 · Cited by 43

Quantitative mass spectrometry and PAR-CLIP to identify RNA-protein interactions

Scheibe, M., Butter, F., Hafner, M., Tuschl, T., & Mann, M. (2012) · Nucleic Acids Research · doi:10.1093/nar/gks746 · Cited by 41

Regulation of membrane excitability: a convergence on voltage-gated sodium conductance

Lin, W.-H., & Baines, R. (2014) · Molecular Neurobiology · doi:10.1007/s12035-014-8674-0 · Cited by 41

lncRedibly versatile: biochemical and biological functions of long noncoding RNAs

Shields, E. J., Petracovici, A., & Bonasio, R. (2019) · Biochemical Journal · doi:10.1042/bcj20180440 · Cited by 42

De Novo Frameshift Variants in the Neuronal Splicing Factor NOVA2 Result in a Common C-Terminal Extension and Cause a Severe Form of Neurodevelopmental Disorder

Mattioli, F., Hayot, G., Drouot, N., Isidor, B., Courraud, J., Hinckelmann, M.-V., Mau‐Them, F. T., Sellier, C., Goldman, A. M., Telegrafi, A. B., et al. (2020) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2020.02.013 · Cited by 41

RNA-Binding Protein Immunoprecipitation from Whole-Cell Extracts

Köster, T., & Staiger, D. (2013) · Methods in molecular biology · doi:10.1007/978-1-62703-580-4_35 · Cited by 41

ssHMM: extracting intuitive sequence-structure motifs from high-throughput RNA-binding protein data

Heller, D., Krestel, R., Ohler, U., Vingron, M., & Marsico, A. (2017) · Nucleic Acids Research · doi:10.1093/nar/gkx756 · Cited by 42

RNA Bind-n-Seq

Lambert, N. J., Robertson, A. D., & Burge, C. B. (2015) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/bs.mie.2015.02.007 · Cited by 40

Phylogenetically Conserved Binding of Specific K Homology Domain Proteins to the 3′-Untranslated Region of the Vertebrate Middle Neurofilament mRNA

Thyagarajan, A., & Szaro, B. G. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m408915200 · Cited by 40

Mass Spectrometric Analysis of Glycine Receptor-associated Gephyrin Splice Variants

Paarmann, I., Schmitt, B., Meyer, B., Karas, M., & Betz, H. (2006) · Journal of Biological Chemistry · doi:10.1074/jbc.m607764200 · Cited by 40

Profiling of RNA-binding protein binding sites by in situ reverse transcription-based sequencing

Xiao, Y., Chen, Y.-M., Zou, Z., Ye, C., Dou, X., Wu, J., Liu, C., Liu, S., Yan, H., Wang, P., et al. (2024) · Nature Methods · doi:10.1038/s41592-023-02146-w · Cited by 39

CRISPR/Cas9-mediated integration enables TAG-eCLIP of endogenously tagged RNA binding proteins

Nostrand, E. L. V., Gelboin-Burkhart, C. A., Wang, R., Pratt, G. A., Blue, S. M., & Yeo, G. W.-M. (2016) · Methods · doi:10.1016/j.ymeth.2016.12.007 · Cited by 39

RNA motifs and combinatorial prediction of interactions, stability and localization of noncoding RNAs

Gandhi, M., Caudron‐Herger, M., & Diederichs, S. (2018) · Nature Structural & Molecular Biology · doi:10.1038/s41594-018-0155-0 · Cited by 39

Inconsistencies and Limitations of Current MicroRNA Target Identification Methods

Mockly, S., & Seitz, H. (2019) · Methods in molecular biology · doi:10.1007/978-1-4939-9207-2_16 · Cited by 42

Chemo‐enzymatic treatment of RNA to facilitate analyses

Muthmann, N., Hartstock, K., & Rentmeister, A. (2019) · Wiley Interdisciplinary Reviews - RNA · doi:10.1002/wrna.1561 · Cited by 39

The nuclear functions of long noncoding RNAs come into focus

Song, Z., Lin, J., Li, Z., & Huang, C. (2021) · Non-coding RNA Research · doi:10.1016/j.ncrna.2021.03.002 · Cited by 41

A ligand-insensitive UNC5B splicing isoform regulates angiogenesis by promoting apoptosis

Pradella, D., Deflorian, G., Pezzotta, A., Matteo, A. D., Belloni, E., Campolungo, D., Paradisi, A., Bugatti, M., Vermi, W., Campioni, M., et al. (2021) · Nature Communications · doi:10.1038/s41467-021-24998-6 · Cited by 42

Nucleotide-amino acid π-stacking interactions initiate photo cross-linking in RNA-protein complexes

Knörlein, A., Sarnowski, C. P., de Vries, T., Stoltz, M., Götze, M., Aebersold, R. H., Allain, F. H. ‐., Leitner, A., & Hall, J. (2022) · Nature Communications · doi:10.1038/s41467-022-30284-w · Cited by 41

A method to find tissue-specific novel sites of selective adenosine deamination

Ohlson, J. I. (2005) · Nucleic Acids Research · doi:10.1093/nar/gni169 · Cited by 39

mRNA trafficking in fungi

Zarnack, K., & Feldbrügge, M. (2007) · Molecular Genetics and Genomics · doi:10.1007/s00438-007-0271-8 · Cited by 39

RNA-binding proteins in pluripotency, differentiation, and reprogramming

Guallar, D., & Wang, J. (2014) · Frontiers in Biology · doi:10.1007/s11515-014-1326-y · Cited by 39

'Oming in on RNA–protein interactions

Rinn, J. L., & Ule, J. (2014) · Genome biology · doi:10.1186/gb4158 · Cited by 41

From Structure to Function of RNA Binding Domains

Lorkovic, Z. (2012) · CRC Press eBooks · doi:10.1201/9781498713368-15 · Cited by 38

Genome-Wide Mapping of Cellular Protein–RNA Interactions Enabled by Chemical Crosslinking

Li, X., Song, J., & Yi, C. (2014) · Genomics Proteomics & Bioinformatics · doi:10.1016/j.gpb.2014.03.001 · Cited by 40

Serine/Arginine-rich protein family of splicing regulators: New approaches to study splice isoform functions

Morton, M. J. L., Al‐Tamimi, N., Butt, H., Reddy, A. S. N., & Mahfouz, M. M. (2019) · Plant Science · doi:10.1016/j.plantsci.2019.02.017 · Cited by 39

Nonlinear DNA methylation trajectories in aging male mice

Olecka, M., van Bömmel, A., Best, L., Haase, M., Förste, S., Riege, K., Dost, T., Flor, S., Witte, O. W., Franzenburg, S., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-47316-2 · Cited by 40

Deciphering the protein‐RNA recognition code: Combining large‐scale quantitative methods with structural biology

Hennig, J., & Sattler, M. (2015) · BioEssays · doi:10.1002/bies.201500033 · Cited by 37

The neurofibromatosis type I pre-mRNA is a novel target of CELF protein-mediated splicing regulation

Barron, V. A., Zhu, H., Hinman, M. N., Ladd, A. N., & Lou, H. J. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkp766 · Cited by 37

Alternative splicing and bioinformatic analysis of human U12-type introns

Chang, W., Chen, Y., Lee, K.-M., & Tarn, W. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkm026 · Cited by 37

Current analysis of host–parasite interactions with a focus on next generation sequencing data

Greenwood, J. M., Ezquerra, A. L., Behrens, S., Branca, A., & Mallet, L. (2016) · Zoology · doi:10.1016/j.zool.2016.06.010 · Cited by 37

TREX reveals proteins that bind to specific RNA regions in living cells

(2024) · doi:10.1038/s41592-024-02181-1 · Cited by 36

The miRNA-Mediated Cross-Talk between Transcripts Provides a Novel Layer of Posttranscriptional Regulation

Tan, J. Y., & Marques, A. C. (2014) · Advances in genetics · doi:10.1016/b978-0-12-800271-1.00003-2 · Cited by 37

Ribonucleoprotein complexes in neurologic diseases

Ule, J. (2008) · Current Opinion in Neurobiology · doi:10.1016/j.conb.2008.09.018 · Cited by 38

Hyper conserved elements in vertebrate mRNA 3′-UTRs reveal a translational network of RNA-binding proteins controlled by HuR

Dassi, E., Zuccotti, P., Leo, S., Provenzani, A., Assfalg, M., D’Onofrio, M., Riva, P., & Quattrone, A. (2013) · Nucleic Acids Research · doi:10.1093/nar/gkt017 · Cited by 39

Feed-Forward Regulation of a Cell Fate Determinant by an RNA-Binding Protein Generates Asymmetry in Yeast

Wolf, J. J., Dowell, R. D., Mahony, S., Rabani, M., Gifford, D. K., & Fink, G. R. (2010) · Genetics · doi:10.1534/genetics.110.113944 · Cited by 38

Emerging Omics Approaches in Aging Research

Lorusso, J. S., Sviderskiy, O., & Labunskyy, V. M. (2017) · Antioxidants and Redox Signaling · doi:10.1089/ars.2017.7163 · Cited by 39

Alternative Splicing in Genetic Diseases: Improved Diagnosis and Novel Treatment Options

Bergsma, A. J., van der Wal, E., Broeders, M., van der Ploeg, A. T., & Pijnappel, W. W. M. P. (2017) · International review of cytology · doi:10.1016/bs.ircmb.2017.07.008 · Cited by 42

Developing Global Insight into RNA RegulationPreprint

Darnell, R. B. (2006) · Cold Spring Harbor Symposia on Quantitative Biology · doi:10.1101/sqb.2006.71.002 · Cited by 36

RNA Binding Proteins as Pioneer Determinants of Infection: Protective, Proviral, or Both?

Lisy, S. M., Rothamel, K. L., & Ascano, M. (2021) · Viruses · doi:10.3390/v13112172 · Cited by 35

Sensing of biomolecular interactions using fluorescence complementing systems in living cells

Zhang, X., Cui, Z., & Wang, D. (2015) · Biosensors and Bioelectronics · doi:10.1016/j.bios.2015.07.069 · Cited by 35

Identifying novel protein interactions: Proteomic methods, optimisation approaches and data analysis pipelines

Gonçalves-Carneiro, D., Clarke, T. L., Davies, C. C., & Bailey, D. (2015) · Methods · doi:10.1016/j.ymeth.2015.08.022 · Cited by 36

Transcriptome-wide identification of RNA binding sites by CLIP-seq

Murigneux, V., Saulière, J., Crollius, H. R., & Hir, H. L. (2013) · Methods · doi:10.1016/j.ymeth.2013.03.022 · Cited by 39

A microtranslatome coordinately regulates sodium and potassium currents in the human heart

Eichel, C. A., Pérez, E. B. R., Liu, F., Jameson, M. B., Jones, D. K., Knickelbine, J. J., & Robertson, G. A. (2019) · eLife · doi:10.7554/elife.52654 · Cited by 37

Regulatory Roles of Heterogeneous Nuclear Ribonucleoprotein M and Nova-1 Protein in Alternative Splicing of Dopamine D2 Receptor Pre-mRNA

Park, E., Iaccarino, C., Lee, J., Kwon, I., Baik, S. M., Kim, M., Seong, J. Y., Son, G. H., Borrelli, E., & Kim, K. (2011) · Journal of Biological Chemistry · doi:10.1074/jbc.m110.206540 · Cited by 35

T cells targeting a neuronal paraneoplastic antigen mediate tumor rejection and trigger CNS autoimmunity with humoral activation

Blachère, N. E., Orange, D. E., Santomasso, B., Doerner, J., Foo, P. K., Herre, M., Fak, J. J., Monette, S., Gantman, E. C., Frank, M. O., et al. (2014) · European Journal of Immunology · doi:10.1002/eji.201444624 · Cited by 35

A Novel Intronic cis Element, ISE/ISS-3, Regulates Rat Fibroblast Growth Factor Receptor 2 Splicing through Activation of an Upstream Exon and Repression of a Downstream Exon Containing a Noncanonical Branch Point Sequence

Hovhannisyan, R. H., & Carstens, R. P. (2004) · Molecular and Cellular Biology · doi:10.1128/mcb.25.1.250-263.2005 · Cited by 35

Understanding the redundant functions of the m6A-binding YTHDF proteins

Zaccara, S., & Jaffrey, S. R. (2024) · RNA · doi:10.1261/rna.079988.124 · Cited by 36

SPIDR enables multiplexed mapping of RNA-protein interactions and uncovers a mechanism for selective translational suppression upon cell stress

Wolin, E., Guo, J. K., Blanco, M. R., Goronzy, I. N., Gorhe, D., Dong, W., Perez, A. A., Keskin, A., Valenzuela, E., Abdou, A. A., et al. (2025) · Cell · doi:10.1016/j.cell.2025.06.042 · Cited by 35

A rapid method for assessing the RNA-binding potential of a protein

Bendak, K., Loughlin, F. E., Cheung, V., O’Connell, M. R., Crossley, M., & Mackay, J. P. (2012) · Nucleic Acids Research · doi:10.1093/nar/gks285 · Cited by 34

RNA sequencing: from tag-based profiling to resolving complete transcript structure

de Klerk, E., den Dunnen, J. T., & Hoen, P. A. C. ’. (2014) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-014-1637-9 · Cited by 35

Allogeneic T cell responses are regulated by a specific miRNA-mRNA network

Sun, Y., Tawara, I., Zhao, M., Qin, Z. S., Toubai, T., Mathewson, N. D., Tamaki, H., Nieves, E. C., Chinnaiyan, A. M., & Reddy, P. R. (2013) · Journal of Clinical Investigation · doi:10.1172/jci70013 · Cited by 34

Fragile X Syndrome and Alzheimers Disease: Another Story About APP and β -Amyloid

Malter, J. S., Ray, B. C., Westmark, P. R., & Westmark, C. J. (2010) · Current Alzheimer Research · doi:10.2174/156720510791050957 · Cited by 34

Interplay of chromatin modifications and non-coding RNAs in the heart

Mathiyalagan, P., Keating, S. T., Du, X., & El‐Osta, A. (2013) · Epigenetics · doi:10.4161/epi.26405 · Cited by 35

Neuro‐oncological ventral antigen 1 ( NOVA 1): Implications in neurological diseases and cancers

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Improved binding site assignment by high-resolution mapping of RNA–protein interactions using iCLIP

Hauer, C., Curk, T., Anders, S., Schwarzl, T., Alleaume, A.-M., Sieber, J., Hollerer, I., Bhuvanagiri, M., Huber, W. K., Hentze, M. W., et al. (2015) · Nature Communications · doi:10.1038/ncomms8921 · Cited by 33

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Barra, J., & Leucci, E. (2017) · Frontiers in Molecular Biosciences · doi:10.3389/fmolb.2017.00045 · Cited by 37

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Luo, H., Tang, W., Liu, H., Zeng, X., Ngai, W. S. C., Gao, R., Li, H., Li, R., Zheng, H., Guo, J., et al. (2022) · Angewandte Chemie International Edition · doi:10.1002/anie.202202008 · Cited by 33

Meiotic Messenger RNA and Noncoding RNA Targets of the RNA-Binding Protein Translin (TSN) in Mouse Testis1

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(2003) · Science s STKE · doi:10.1126/stke.2092003tw452

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Jensen, K. B., Dredge, B. K., Stefani, G., Zhong, R., Buckanovich, R. J., Okano, H. J., Yang, Y. Y. L., & Darnell, R. B. (2000) · Neuron · doi:10.1016/s0896-6273(00)80900-9 · Cited by 426

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