Comparative functional genomics of the fission yeasts

Exploring the metabolic and genetic control of gene expression on a genomic scale.

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Regulation of Heterochromatic Silencing and Histone H3 Lysine-9 Methylation by RNAi

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Sequencing and comparison of yeast species to identify genes and regulatory elements

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The genome sequence of Schizosaccharomyces pombe

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Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

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Bidirectional promoters generate pervasive transcription in yeast

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Comprehensive comparative analysis of strand-specific RNA sequencing methods

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Natural history and evolutionary principles of gene duplication in fungi

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How did Saccharomyces evolve to become a good brewer?

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The transcriptional program of meiosis and sporulation in fission yeast

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Four mating‐type genes control sexual differentiation in the fission yeast.

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Conserved nucleosome positioning defines replication originsPreprint

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Schizosaccharomyces pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from those of Saccharomyces cerevisiae

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RNAi-dependent formation of heterochromatin and its diverse functions

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Control of DNA synthesis genes in fission yeast by the cell-cycle gene cdclO+

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Carbohydrate and energy-yielding metabolism in non-conventional yeasts: Figure 1

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Heterochromatin Integrity Affects Chromosome Reorganization After Centromere Dysfunction

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A Recombinationally Repressed Region Between mat2 and mat3 Loci Shares Homology to Centromeric Repeats and Regulates Directionality of Mating-Type Switching in Fission Yeast

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Host genome surveillance for retrotransposons by transposon-derived proteins

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Cell type switching by DNA transposition in fission yeast

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Histone H2A.Z cooperates with RNAi and heterochromatin factors to suppress antisense RNAs

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Strand-specific RNA sequencing reveals extensive regulated long antisense transcripts that are conserved across yeast species

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Convergent Domestication of pogo-like Transposases into Centromere-Binding Proteins in Fission Yeast and Mammals

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TER1, the RNA subunit of fission yeast telomerase

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Structural Organization and Functional Analysis of Centromeric DNA in the Fission Yeast Schizosaccharomyces pombe

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Evolutionary dynamics of transposable elements at the centromere

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RNase-sensitive DNA modification(s) initiates S. pombe mating-type switchingPreprint

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Dynamic transcriptome of Schizosaccharomyces pombe shown by RNA-DNA hybrid mapping

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A novel switch‐activating site (SAS1) and its cognate binding factor (SAP1) required for efficient mat1 switching in Schizosaccharomyces pombe.

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Carbohydrate and energy-yielding metabolism in non-conventional yeasts

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Centromeres of the fission yeast Schizosaccharomyces pombe are highly variable genetic loci.

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SURVEY AND SUMMARY: Analysis of the splicing machinery in fission yeast: a comparison with budding yeast and mammals

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Autoregulated Expression of Schizosaccharomyces pombe Meiosis-Specific Transcription Factor Mei4 and a Genome-Wide Search for Its Target Genes

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CENP-B preserves genome integrity at replication forks paused by retrotransposon LTR

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The best yeast?

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Organization of DNA replication origins in the fission yeast genome

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Promoter-driven splicing regulation in fission yeast

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Functional Characterization of Alanine Racemase from Schizosaccharomyces pombe : a Eucaryotic Counterpart to Bacterial Alanine Racemase

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The Prevalence and Regulation of Antisense Transcripts in Schizosaccharomyces pombe

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The gld1 + gene encoding glycerol dehydrogenase is required for glycerol metabolism in Schizosaccharomyces pombe

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Negative Control Contributes to an Extensive Program of Meiotic Splicing in Fission Yeast

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The pedigree pattern of mating-type switching in Schizosaccharomyces pombe

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The 2.1-kb Inverted Repeat DNA Sequences Flank the mat2,3 Silent Region in Two Species of Schizosaccharomyces and Are Involved in Epigenetic Silencing in Schizosaccharomyces pombe

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Identification of a Novel Type of Spacer Element Required for Imprinting in Fission Yeast

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Full-length transcriptome assembly from RNA-Seq data without a reference genome

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De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

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De novo assembly of bacterial transcriptomes from RNA-seq data

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PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regionsPreprint

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Quantitative Analysis of Fission Yeast Transcriptomes and Proteomes in Proliferating and Quiescent Cells

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Gene regulation by antisense transcription

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Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study

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Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions

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Fungal evolution: diversity, taxonomy and phylogeny of the Fungi

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Analysis of the Genome and Transcriptome of Cryptococcus neoformans var. grubii Reveals Complex RNA Expression and Microevolution Leading to Virulence Attenuation

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Production of recombinant proteins by yeast cells

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The long intergenic noncoding RNA landscape of human lymphocytes highlights the regulation of T cell differentiation by linc-MAF-4

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Combining RNA-seq data and homology-based gene prediction for plants, animals and fungi

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PomBase: a comprehensive online resource for fission yeast

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Why, when, and how did yeast evolve alcoholic fermentation?

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Premetazoan genome evolution and the regulation of cell differentiation in the choanoflagellate Salpingoeca rosetta

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RNAi and Heterochromatin AssemblyPreprint

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An Ancient Yeast for Young Geneticists: A Primer on the Schizosaccharomyces pombe Model System

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CodingQuarry: highly accurate hidden Markov model gene prediction in fungal genomes using RNA-seq transcripts

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Non-model model organisms

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Comparative Genome Analysis of Trichophyton rubrum and Related Dermatophytes Reveals Candidate Genes Involved in Infection

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Surveillance of Nuclear Pore Complex Assembly by ESCRT-III/Vps4

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Yeast “Make-Accumulate-Consume” life strategy evolved as a multi-step process that predates the whole genome duplication

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Chromosome Scale Genome Assembly and Transcriptome Profiling of Nannochloropsis gaditana in Nitrogen Depletion

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Genome analysis of three Pneumocystis species reveals adaptation mechanisms to life exclusively in mammalian hosts

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Distinctive Expansion of Potential Virulence Genes in the Genome of the Oomycete Fish Pathogen Saprolegnia parasitica

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Mtr4-like Protein Coordinates Nuclear RNA Processing for Heterochromatin Assembly and for Telomere Maintenance

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Evolutionary Role of Interspecies Hybridization and Genetic Exchanges in Yeasts

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Epigenetic Regulation of Chromatin States inSchizosaccharomyces pombePreprint

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Genome Characterization of the Oleaginous Fungus Mortierella alpina

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Histone modifications rather than the novel regional centromeres of Zymoseptoria tritici distinguish core and accessory chromosomes

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Functional Repurposing Revealed by Comparing S. pombe and S. cerevisiae Genetic Interactions

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Biological and chemical diversity go hand in hand: Basidiomycota as source of new pharmaceuticals and agrochemicals

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Origin of Spliceosomal Introns and Alternative SplicingPreprint

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RNAi triggered by specialized machinery silences developmental genes and retrotransposons

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Approaches to Fungal Genome Annotation

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Prevalence of transcription factors in ascomycete and basidiomycete fungi

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Transcriptomic Analysis of Tail Regeneration in the Lizard Anolis carolinensis Reveals Activation of Conserved Vertebrate Developmental and Repair Mechanisms

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Fungal Alternative Splicing is Associated with Multicellular Complexity and Virulence: A Genome-Wide Multi-Species Study

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wtf genes are prolific dual poison-antidote meiotic drivers

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The Spontaneous Mutation Rate in the Fission Yeast Schizosaccharomyces pombe

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Exploring long non-coding RNAs through sequencing

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Genome Diversity and Evolution in the Budding Yeasts (Saccharomycotina)

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The wine and beer yeastDekkera bruxellensis

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RNAi is a critical determinant of centromere evolution in closely related fungi

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Long-read sequencing of the coffee bean transcriptome reveals the diversity of full-length transcripts

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A large gene family in fission yeast encodes spore killers that subvert Mendel’s law

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Genome rearrangements and pervasive meiotic drive cause hybrid infertility in fission yeast

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