Polarization of the Effects of Autoimmune and Neurodegenerative Risk Alleles in Leukocytes

Raj, Towfique, Rothamel, Katie, Mostafavi, Sara, Ye, Chun, Lee, Mark N., Replogle, Joseph M., Feng, Ting, Lee, Michelle, Asinovski, Natasha, Frohlich, Irene, Imboywa, Selina, Von Korff, Alina, Okada, Yukinori, Patsopoulos, Nikolaos A., Davis, Scott, McCabe, Cristin, Paik, Hyun-il, Srivastava, Gyan P., Raychaudhuri, Soumya, Hafler, David A., Koller, Daphne, Regev, Aviv, Hacohen, Nir, Mathis, Diane, Benoist, Christophe, Stranger, Barbara E., De Jager, Philip L.·2014·Science
DOI 10.1126/science.1249547

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  50. Additional file 11 of Epigenetic regulation of innate immune memory in microglia
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  51. Additional file 3 of Deconvolution of bulk blood eQTL effects into immune cell subpopulations
    Raúl Aguirre‐Gamboa, Niek de Klein, Jennifer Di Tommaso, Annique Claringbould, Monique G.P. van der Wijst, Dylan H. de Vries, Harm Brugge, Roy Oelen, Urmo Võsa, Maria Magdalena Zorro et al. · 2020 · Figshare
  52. Additional file 6 of Epigenetic regulation of innate immune memory in microglia
    Xiaoming Zhang, Laura Kracht, Antônio Marcondes Lerário, Marissa Lisa Dubbelaar, Nieske Brouwer, Evelyn M. Wesseling, Erik Boddeke, Bart J. L. Eggen, Susanne M. Kooistra · 2022 · Figshare
  53. Additional file 13 of Epigenetic regulation of innate immune memory in microglia
    Xiaoming Zhang, Laura Kracht, Antônio Marcondes Lerário, Marissa Lisa Dubbelaar, Nieske Brouwer, Evelyn M. Wesseling, Erik Boddeke, Bart J. L. Eggen, Susanne M. Kooistra · 2022 · Figshare
  54. Additional file 14 of Epigenetic regulation of innate immune memory in microglia
    Xiaoming Zhang, Laura Kracht, Antônio Marcondes Lerário, Marissa Lisa Dubbelaar, Nieske Brouwer, Evelyn M. Wesseling, Erik Boddeke, Bart J. L. Eggen, Susanne M. Kooistra · 2022 · Figshare
  55. Additional file 2 of Deconvolution of bulk blood eQTL effects into immune cell subpopulations
    Raúl Aguirre‐Gamboa, Niek de Klein, Jennifer Di Tommaso, Annique Claringbould, Monique G.P. van der Wijst, Dylan H. de Vries, Harm Brugge, Roy Oelen, Urmo Võsa, Maria Magdalena Zorro et al. · 2020 · Figshare
  56. Additional file 2 of The genetic and evolutionary basis of gene expression variation in East Africans
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  57. Additional file 8 of Epigenetic regulation of innate immune memory in microglia
    Xiaoming Zhang, Laura Kracht, Antônio Marcondes Lerário, Marissa Lisa Dubbelaar, Nieske Brouwer, Evelyn M. Wesseling, Erik Boddeke, Bart J. L. Eggen, Susanne M. Kooistra · 2022 · Figshare
  58. Additional file 1 of Deep sequencing reveals a DAP1 regulatory haplotype that potentiates autoimmunity in systemic lupus erythematosus
    Prithvi Raj, Ran Song, Honglin Zhu, Linley Riediger, Dong‐Jae Jun, Chaoying Liang, Carlos Arana, Bo Zhang, Yajing Gao, Benjamin Wakeland et al. · 2020 · Figshare
  59. Additional file 10 of Epigenetic regulation of innate immune memory in microglia
    Xiaoming Zhang, Laura Kracht, Antônio Marcondes Lerário, Marissa Lisa Dubbelaar, Nieske Brouwer, Evelyn M. Wesseling, Erik Boddeke, Bart J. L. Eggen, Susanne M. Kooistra · 2022 · Figshare
  60. Additional file 9 of Epigenetic regulation of innate immune memory in microglia
    Xiaoming Zhang, Laura Kracht, Antônio Marcondes Lerário, Marissa Lisa Dubbelaar, Nieske Brouwer, Evelyn M. Wesseling, Erik Boddeke, Bart J. L. Eggen, Susanne M. Kooistra · 2022 · Figshare
  61. Additional file 7 of Epigenetic regulation of innate immune memory in microglia
    Xiaoming Zhang, Laura Kracht, Antônio Marcondes Lerário, Marissa Lisa Dubbelaar, Nieske Brouwer, Evelyn M. Wesseling, Erik Boddeke, Bart J. L. Eggen, Susanne M. Kooistra · 2022 · Figshare
  62. Additional file 5 of Epigenetic regulation of innate immune memory in microglia
    Xiaoming Zhang, Laura Kracht, Antônio Marcondes Lerário, Marissa Lisa Dubbelaar, Nieske Brouwer, Evelyn M. Wesseling, Erik Boddeke, Bart J. L. Eggen, Susanne M. Kooistra · 2022 · Figshare
  63. Additional file 12 of Epigenetic regulation of innate immune memory in microglia
    Xiaoming Zhang, Laura Kracht, Antônio Marcondes Lerário, Marissa Lisa Dubbelaar, Nieske Brouwer, Evelyn M. Wesseling, Erik Boddeke, Bart J. L. Eggen, Susanne M. Kooistra · 2022 · Figshare
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  69. Additional file 5 of Transcriptome deregulation of peripheral monocytes and whole blood in GBA-related Parkinson’s disease
    Giulietta Maria Riboldi, Ricardo A. Vialle, Elisa Navarro, Evan Udine, de Paiva Lopes, Katia, Jack Humphrey, Amanda Allan, Madison Parks, Brooklyn Henderson, Kelly Astudillo et al. · 2022 · Figshare
  70. Additional file 10 of Mapping DNA interaction landscapes in psoriasis susceptibility loci highlights KLF4 as a target gene in 9q31
    Helen F. Ray-Jones, Kate Duffus, Amanda McGovern, Paul Martin, Chenfu Shi, Jenny Hankinson, Oliver Gough, Annie Yarwood, Andrew P. Morris, Antony D. Adamson et al. · 2020 · Figshare
  71. Additional file 7 of Transcriptome deregulation of peripheral monocytes and whole blood in GBA-related Parkinson’s disease
    Giulietta Maria Riboldi, Ricardo A. Vialle, Elisa Navarro, Evan Udine, de Paiva Lopes, Katia, Jack Humphrey, Amanda Allan, Madison Parks, Brooklyn Henderson, Kelly Astudillo et al. · 2022 · Figshare
  72. Additional file 4 of Mapping DNA interaction landscapes in psoriasis susceptibility loci highlights KLF4 as a target gene in 9q31
    Helen F. Ray-Jones, Kate Duffus, Amanda McGovern, Paul Martin, Chenfu Shi, Jenny Hankinson, Oliver Gough, Annie Yarwood, Andrew P. Morris, Antony D. Adamson et al. · 2020 · Figshare
  73. Additional file 2 of Deep sequencing reveals a DAP1 regulatory haplotype that potentiates autoimmunity in systemic lupus erythematosus
    Prithvi Raj, RAN SONG, Zhu, Honglin, Riediger, Linley, Jun, Dong-Jae, Chaoying Liang, Carlos Arana, Bo Zhang, Gao, Yajing, Benjamin Wakeland et al. · 2020 · Figshare
  74. Additional file 3 of The genetic and evolutionary basis of gene expression variation in East Africans
    Derek E. Kelly, Shweta Ramdas, Rong Ma, Renata Rawlings-Goss, Gregory R. Grant, Alessia Ranciaro, Jibril B Hirbo, William R. Beggs, Meredith Yeager, Stephen Jacob Chanock et al. · 2023 · Figshare
  75. Additional file 3 of Deep sequencing reveals a DAP1 regulatory haplotype that potentiates autoimmunity in systemic lupus erythematosus
    Prithvi Raj, RAN SONG, Zhu, Honglin, Riediger, Linley, Jun, Dong-Jae, Chaoying Liang, Carlos Arana, Bo Zhang, Gao, Yajing, Benjamin Wakeland et al. · 2020 · Figshare
  76. Additional file 4 of Transcriptome deregulation of peripheral monocytes and whole blood in GBA-related Parkinson’s disease
    Giulietta Maria Riboldi, Ricardo A. Vialle, Elisa Navarro, Evan Udine, de Paiva Lopes, Katia, Jack Humphrey, Amanda Allan, Madison Parks, Brooklyn Henderson, Kelly Astudillo et al. · 2022 · Figshare
  77. Additional file 8 of Mapping DNA interaction landscapes in psoriasis susceptibility loci highlights KLF4 as a target gene in 9q31
    Helen F. Ray-Jones, Kate Duffus, Amanda McGovern, Paul Martin, Chenfu Shi, Jenny Hankinson, Oliver Gough, Annie Yarwood, Andrew P. Morris, Antony D. Adamson et al. · 2020 · Figshare
  78. Additional file 14 of Mapping DNA interaction landscapes in psoriasis susceptibility loci highlights KLF4 as a target gene in 9q31
    Helen F. Ray-Jones, Kate Duffus, Amanda McGovern, Paul Martin, Chenfu Shi, Jenny Hankinson, Oliver Gough, Annie Yarwood, Andrew P. Morris, Antony D. Adamson et al. · 2020 · Figshare
  79. Additional file 6 of Transcriptome deregulation of peripheral monocytes and whole blood in GBA-related Parkinson’s disease
    Giulietta Maria Riboldi, Ricardo A. Vialle, Elisa Navarro, Evan Udine, de Paiva Lopes, Katia, Jack Humphrey, Amanda Allan, Madison Parks, Brooklyn Henderson, Kelly Astudillo et al. · 2022 · Figshare
  80. Additional file 2 of Transcriptome deregulation of peripheral monocytes and whole blood in GBA-related Parkinson’s disease
    Giulietta Maria Riboldi, Ricardo A. Vialle, Elisa Navarro, Evan Udine, de Paiva Lopes, Katia, Jack Humphrey, Amanda Allan, Madison Parks, Brooklyn Henderson, Kelly Astudillo et al. · 2022 · Figshare
  81. Additional file 8 of Transcriptome deregulation of peripheral monocytes and whole blood in GBA-related Parkinson’s disease
    Giulietta Maria Riboldi, Ricardo A. Vialle, Elisa Navarro, Evan Udine, de Paiva Lopes, Katia, Jack Humphrey, Amanda Allan, Madison Parks, Brooklyn Henderson, Kelly Astudillo et al. · 2022 · Figshare
  82. Additional file 6 of Mapping DNA interaction landscapes in psoriasis susceptibility loci highlights KLF4 as a target gene in 9q31
    Helen F. Ray-Jones, Kate Duffus, Amanda McGovern, Paul Martin, Chenfu Shi, Jenny Hankinson, Oliver Gough, Annie Yarwood, Andrew P. Morris, Antony D. Adamson et al. · 2020 · Figshare
  83. Additional file 13 of Mapping DNA interaction landscapes in psoriasis susceptibility loci highlights KLF4 as a target gene in 9q31
    Helen F. Ray-Jones, Kate Duffus, Amanda McGovern, Paul Martin, Chenfu Shi, Jenny Hankinson, Oliver Gough, Annie Yarwood, Andrew P. Morris, Antony D. Adamson et al. · 2020 · Figshare
  84. Additional file 11 of Mapping DNA interaction landscapes in psoriasis susceptibility loci highlights KLF4 as a target gene in 9q31
    Helen F. Ray-Jones, Kate Duffus, Amanda McGovern, Paul Martin, Chenfu Shi, Jenny Hankinson, Oliver Gough, Annie Yarwood, Andrew P. Morris, Antony D. Adamson et al. · 2020 · Figshare
  85. Additional file 1 of Deconvolution of bulk blood eQTL effects into immune cell subpopulations
    Aguirre-Gamboa, Raúl, Niek de Klein, Jennifer Di Tommaso, Annique Claringbould, Monique G.P. van der Wijst, Dylan H. de Vries, Harm Brugge, Oelen, Roy, Võsa, Urmo, Maria Magdalena Zorro et al. · 2020 · Figshare
  86. Additional file 1 of Epigenetic regulation of innate immune memory in microglia
    Zhang, Xiaoming, Laura Kracht, Antônio Marcondes Lerário, Marissa Lisa Dubbelaar, Nieske Brouwer, Evelyn M. Wesseling, Erik Boddeke, Bart J. L. Eggen, Susanne M. Kooistra · 2022 · Figshare
  87. Additional file 3 of Transcriptome deregulation of peripheral monocytes and whole blood in GBA-related Parkinson’s disease
    Giulietta Maria Riboldi, Ricardo A. Vialle, Elisa Navarro, Evan Udine, de Paiva Lopes, Katia, Jack Humphrey, Amanda Allan, Madison Parks, Brooklyn Henderson, Kelly Astudillo et al. · 2022 · Figshare
  88. Additional file 1 of The genetic and evolutionary basis of gene expression variation in East Africans
    Derek E. Kelly, Shweta Ramdas, Rong Ma, Renata Rawlings-Goss, Gregory R. Grant, Alessia Ranciaro, Jibril B Hirbo, William R. Beggs, Meredith Yeager, Stephen Jacob Chanock et al. · 2023 · Figshare
  89. Additional file 2 of Epigenetic regulation of innate immune memory in microglia
    Zhang, Xiaoming, Laura Kracht, Antônio Marcondes Lerário, Marissa Lisa Dubbelaar, Nieske Brouwer, Evelyn M. Wesseling, Erik Boddeke, Bart J. L. Eggen, Susanne M. Kooistra · 2022 · Figshare
  90. Additional file 9 of Mapping DNA interaction landscapes in psoriasis susceptibility loci highlights KLF4 as a target gene in 9q31
    Helen F. Ray-Jones, Kate Duffus, Amanda McGovern, Paul Martin, Chenfu Shi, Jenny Hankinson, Oliver Gough, Annie Yarwood, Andrew P. Morris, Antony D. Adamson et al. · 2020 · Figshare
  91. Additional file 3 of Epigenetic regulation of innate immune memory in microglia
    Zhang, Xiaoming, Laura Kracht, Antônio Marcondes Lerário, Marissa Lisa Dubbelaar, Nieske Brouwer, Evelyn M. Wesseling, Erik Boddeke, Bart J. L. Eggen, Susanne M. Kooistra · 2022 · Figshare
  92. Additional file 1 of Profiling the peripheral immune response to ex vivo TNF stimulation in untreated juvenile idiopathic arthritis using single cell RNA sequencing
    Imbach, Kathleen J., Nicole J. Treadway, Vaishali Prahalad, Astrid Kosters, Dalia Arafat, Meixue Duan, Talia Gergely, Lori A. Ponder, Chandrakasan, Shanmuganathan, Eliver Ghosn et al. · 2023 · Figshare
  93. Additional file 2 of Mapping DNA interaction landscapes in psoriasis susceptibility loci highlights KLF4 as a target gene in 9q31
    Helen F. Ray-Jones, Kate Duffus, Amanda McGovern, Paul Martin, Chenfu Shi, Jenny Hankinson, Oliver Gough, Annie Yarwood, Andrew P. Morris, Antony D. Adamson et al. · 2020 · Figshare
  94. Additional file 1 of Transcriptome deregulation of peripheral monocytes and whole blood in GBA-related Parkinson’s disease
    Giulietta Maria Riboldi, Ricardo A. Vialle, Elisa Navarro, Evan Udine, de Paiva Lopes, Katia, Jack Humphrey, Amanda Allan, Madison Parks, Brooklyn Henderson, Kelly Astudillo et al. · 2022 · Figshare
  95. Additional file 4 of Epigenetic regulation of innate immune memory in microglia
    Zhang, Xiaoming, Laura Kracht, Antônio Marcondes Lerário, Marissa Lisa Dubbelaar, Nieske Brouwer, Evelyn M. Wesseling, Erik Boddeke, Bart J. L. Eggen, Susanne M. Kooistra · 2022 · Figshare
  96. Additional file 3 of Mapping DNA interaction landscapes in psoriasis susceptibility loci highlights KLF4 as a target gene in 9q31
    Helen F. Ray-Jones, Kate Duffus, Amanda McGovern, Paul Martin, Chenfu Shi, Jenny Hankinson, Oliver Gough, Annie Yarwood, Andrew P. Morris, Antony D. Adamson et al. · 2020 · Figshare
  97. Integration of Peripheral and Central Immune Alteration in Neurodegeneration
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