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m 6 A mRNA methylation facilitates resolution of naïve pluripotency toward differentiation
Abstract
mRNA modification regulates pluripotency: When stem cells progress from an embryonic pluripotent state toward a particular lineage, molecular switches dismantle the transcription factor network that keeps the cell pluripotent. Geula et al. now show that N6-methyladenosine (m6A), a messenger RNA (mRNA) modification present on transcripts of pluripotency factors, drives this transition. Methylation destabilized mRNA transcripts and limited their translation efficiency, which promoted the timely decay of naïve pluripotency. This m6A methylation was also critical for mammalian development. Science , this issue p. 1002
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“Within the cytoplasm, YTHDF1 and YTHDF2 facilitate m6A-dependent translation initiation and m6A-dependent mRNA decay, respectively, under normal and stress conditions (Batista et al., 2014; Du et al., 2016; Geula et al., 2015; Liu et al., 2014; Wang et al., 2014a, 2014b, 2015; Zhou et al., 2015).”
From YTHDC1 mediates nuclear export of N6-methyladenosine methylated mRNAs (2017) · cites this paper as Geula et al., 2015
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“Within the cytoplasm, YTHDF1 and YTHDF2 facilitate m6A-dependent translation initiation and m6A-dependent mRNA decay, respectively, under normal and stress conditions (Batista et al., 2014; Du et al., 2016; Geula et al., 2015; Liu et al., 2014; Wang et al., 2014a, 2014b, 2015; Zhou et al., 2015).”
From YTHDC1 mediates nuclear export of N6-methyladenosine methylated mRNAs (2017) · cites this paper as Geula et al., 2015
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Cites
Fast gapped-read alignment with Bowtie 2
Langmead, B., & Salzberg, S. L. (2012) · Nature Methods · doi:10.1038/nmeth.1923 · Cited by 56,400
STAR: ultrafast universal RNA-seq aligner
Dobin, A., Davis, C. A., Schlesinger, F., Drenkow, J., Zaleski, C., Jha, S., Batut, P., Chaisson, M., & Gingeras, T. R. (2013) · Bioinformatics · doi:10.1093/bioinformatics/bts635 · Cited by 51,709
BEDTools: a flexible suite of utilities for comparing genomic features
Quinlan, A. R., & Hall, I. M. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btq033 · Cited by 27,437
HTSeq—a Python framework to work with high-throughput sequencing data
Anders, S., Pyl, P. T., & Huber, W. (2015) · Bioinformatics · doi:10.1093/bioinformatics/btu638 · Cited by 21,464
Multiplex Genome Engineering Using CRISPR/Cas Systems
Cong, L., Ran, F. A., Cox, D., Lin, S., Barretto, R., Habib, N., Hsu, P. D., Wu, X., Jiang, W., Marraffini, L. A., et al. (2013) · Science · doi:10.1126/science.1231143 · Cited by 15,339
Mapping and quantifying mammalian transcriptomes by RNA-Seq
Mortazavi, A., Williams, B. A., McCue, K., Schaeffer, L., & Wold, B. (2008) · Nature Methods · doi:10.1038/nmeth.1226 · Cited by 13,696
The Human Genome Browser at UCSC
Kent, W. J., Sugnet, C. W., Furey, T. S., Roskin, K. M., Pringle, T. H., Zahler, A. M., & Haussler, A. D. (2002) · Genome Research · doi:10.1101/gr.229102 · Cited by 10,400
N6-methyladenosine-dependent regulation of messenger RNA stability
Wang, X., Lu, Z., Gomez, A., Hon, G. C., Yue, Y., Han, D., Fu, Y., Parisien, M., Dai, Q., Jia, G., et al. (2014) · Nature · doi:10.1038/nature12730 · Cited by 4,558
Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons
Meyer, K. D., Saletore, Y., Zumbo, P., Elemento, O., Mason, C. E., & Jaffrey, S. R. (2012) · Cell · doi:10.1016/j.cell.2012.05.003 · Cited by 4,223
N6-Methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO
Jia, G., Fu, Y., Zhao, X., Dai, Q., Zheng, G., Yang, Y., Yi, C., Lindahl, T., Pan, T., Yang, Y.-G., et al. (2011) · Nature Chemical Biology · doi:10.1038/nchembio.687 · Cited by 4,106
ALKBH5 Is a Mammalian RNA Demethylase that Impacts RNA Metabolism and Mouse Fertility
Zheng, G., Dahl, J. A., Niu, Y., Fedorcsak, P., Huang, C.-M., Li, C. J., Vågbø, C. B., Shi, Y., Wang, W.-L., Song, S.-H., et al. (2013) · Molecular Cell · doi:10.1016/j.molcel.2012.10.015 · Cited by 3,550
Ingolia, N. T., Lareau, L. F., & Weissman, J. S. (2011) · Cell · doi:10.1016/j.cell.2011.10.002 · Cited by 2,187
Ribosome Profiling Provides Evidence that Large Noncoding RNAs Do Not Encode Proteins
Guttman, M., Russell, P., Ingolia, N. T., Weissman, J. S., & Lander, E. S. (2013) · Cell · doi:10.1016/j.cell.2013.06.009 · Cited by 745
Sharova, L. V., Sharov, A. A., Nedorezov, T., Piao, Y., Shaik, N., & Ko, M. S. H. (2009) · DNA Research · doi:10.1093/dnares/dsn030 · Cited by 591
Decoding Human Cytomegalovirus
Stern-Ginossar, N., Weisburd, B., Michalski, A., Le, V. T. K., Hein, M. Y., Huang, S.-X., Ma, M., Shen, B., Qian, S.-B., Hengel, H., et al. (2012) · Science · doi:10.1126/science.1227919 · Cited by 589
Self-citationDeterministic direct reprogramming of somatic cells to pluripotency
Rais, Y., Zviran, A., Geula, S., Gafni, O., Chomsky, E., Viukov, S., Mansour, A. A., Caspi, I., Krupalnik, V., Zerbib, M., et al. (2013) · Nature · doi:10.1038/nature12587 · Cited by 522
Self-citation
Research works printed but not linked: 44
- 10.1016/j.stem.2014.09.015 · DOI
- 10.1016/j.stem.2009.04.015 · DOI
- 10.1038/nchembio.1432 · DOI · Paper page
- 10.1038/nature11112 · DOI · Paper page
- 10.4161/rna.23812 · DOI
- 10.1126/science.1248882 · DOI · Paper page
- 10.1038/ncb2902 · DOI
- 10.1186/gb-2012-13-10-175 · DOI
- 10.1242/dev.085290 · DOI
- 10.1038/nature12745 · DOI
- 10.1038/nature08592 · DOI · Paper page
- 10.1038/nmeth.1409 · DOI
- 10.1038/nbt0509-455 · DOI
- 10.1186/gb-2010-11-10-r106 · DOI · Paper page
- 10.1093/bioinformatics/btp616 · DOI · Paper page
- 10.1038/nprot.2012.148 · DOI
- 10.1186/gb-2008-9-9-r137 · DOI · Paper page
- 10.1093/bioinformatics/btr189 · DOI
- 10.1016/S0076-6879(08)02617-7 · DOI · Paper page
- 10.1038/nprot.2012.086 · DOI
- 10.1038/nmeth.1330 · DOI
- 10.1073/pnas.1200174109 · DOI
- 10.1093/nar/gkr1291 · DOI
- 10.1038/ncomms5726 · DOI
- 10.1186/gb-2014-15-1-r5 · DOI
- 10.1093/bioinformatics/btt287 · DOI
- 10.1016/j.cell.2012.03.026 · DOI
- 10.1016/j.stem.2014.09.019 · DOI · Paper page
- 10.1016/j.cell.2013.10.047 · DOI
- 10.1016/j.cell.2011.08.023 · DOI
- 10.1038/nature12270 · DOI
- 10.1038/ncb2839 · DOI
- 10.1146/annurev.biochem.71.110601.135501 · DOI
- 10.1186/gb-2012-13-12-252 · DOI
- 10.1016/j.stem.2014.05.005 · DOI
- 10.1016/j.cub.2005.04.051 · DOI · Paper page
- 10.1038/nsmb.2510 · DOI · Paper page
- 10.1038/nature10960 · DOI
- 10.1128/MCB.24.4.1640-1648.2004 · DOI
- 10.1038/nature07783 · DOI
- 10.1016/j.stem.2014.07.002 · DOI
- 10.1016/j.cell.2014.08.029 · DOI
- 10.1073/pnas.1319738111 · DOI
- 10.1016/j.stem.2009.05.015 · DOI
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Zaccara, S., Ries, R. J., & Jaffrey, S. R. (2019) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-019-0168-5 · Cited by 2,597
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Xiao, W., Adhikari, S., Dahal, U., Chen, Y.-S., Hao, Y.-J., Sun, B.-F., Sun, H.-Y., Li, A., Ping, X.-L., Lai, W.-Y., et al. (2016) · Molecular Cell · doi:10.1016/j.molcel.2016.01.012 · Cited by 2,054
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Shi, H., Wang, X., Lu, Z., Zhao, B. S., Ma, H., Hsu, P. J., Liu, C., & He, C. (2017) · Cell Research · doi:10.1038/cr.2017.15 · Cited by 1,815
Metadata
- Authors
- Geula, S., Moshitch-Moshkovitz, S., Dominissini, D., Mansour, A. A., Kol, N., Salmon-Divon, M., Hershkovitz, V., Peer, E., Mor, N., Manor, Y. S., Ben-Haim, M. S., Eyal, E., Yunger, S., Pinto, Y., Jaitin, D. A., Viukov, S., Rais, Y., Krupalnik, V., Chomsky, E., Zerbib, M., Maza, I., Rechavi, Y., Massarwa, R., Hanna, S., Amit, I., Levanon, E. Y., Amariglio, N., Stern-Ginossar, N., Novershtern, N., Rechavi, G., & Hanna, J. H.
- Affiliations
- The Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.
- Cancer Research Center, Chaim Sheba Medical Center, Tel Hashomer, Israel, and Sackler School of Medicine, Tel Aviv University, Tel Aviv, Israel.
- Department of Chemistry and Institute for Biophysical Dynamics, The University of Chicago, Chicago, IL 60637, USA.
- Mina and Everard Goodman Faculty of Life Sciences, Bar-Ilan University, Ramat Gan, Israel.
- The Department of Immunology, Weizmann Institute of Science, Rehovot, Israel.
- Venue
- Science
- Published
- 2015-02-27
- Volume
- 347
- Issue
- 6225
- Pages
- 1002-1006
- ISSN
- 0036-8075
- 1095-9203
- Cited by
- 1,533
- References
- 16
- Language
- en
- Funders
- Flight Attendant Medical Research Institute
- Israel Science Foundation (1667/12, 41/11, 1796/12)
- Israeli Centers of Excellence (I-CORE) Program
- Ernest and Bonnie Beutler Research Program
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