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Single-cell multi-omics of human preimplantation embryos shows susceptibility to glucocorticoidsPreprint

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Epigenome-wide association studies for systemic autoimmune diseases: The road behind and the road ahead

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Analysis of KLF4 regulated genes in cancer cells reveals a role of DNA methylation in promoter- enhancer interactions

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Cys2His2 Zinc Finger Methyl-CpG Binding Proteins: Getting a Handle on Methylated DNA

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Regulatory loop between lncRNA FAS-AS1 and DNMT3b controls FAS expression in hydroquinone-treated TK6 cells and benzene-exposed workers

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Regulation of Il6 expression by single CpG methylation in downstream of Il6 transcription initiation site

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3D Genome Organization as an Epigenetic Determinant of Transcription Regulation in T Cells

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DNA Methylation: Genomewide Distribution, Regulatory Mechanism and Therapy Target

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Profiling of immune related genes silenced in EBV-positive gastric carcinoma identified novel restriction factors of human gammaherpesviruses

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Epigenetic remodelling under hypoxia

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Recurrent noncoding somatic and germline WT1 variants converge to disrupt MYB binding in acute promyelocytic leukemia

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Computational Methods for Single-Cell DNA Methylome Analysis

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Integrative epigenomic analyses of small cell lung cancer cells demonstrates the clinical translational relevance of gene body methylation

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TET2 and TET3 loss disrupts small intestine differentiation and homeostasis

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PU.1-Dependent Enhancer Inhibition Separates Tet2 -Deficient Hematopoiesis from Malignant Transformation

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Immunological dysregulation in preeclampsia: Pathogenesis and clinical implications

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Quantitative profiling of BATF family proteins/JUNB/IRF hetero-trimers using Spec-seq

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Epigenetic Regulation of Neural Stem Cells: The Emerging Role of Nucleoporins

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DNMT3B supports meso-endoderm differentiation from mouse embryonic stem cells

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Hidden modes of DNA binding by human nuclear receptors

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Comprehensive interrogation of human skeletal muscle reveals a dissociation between insulin resistance and mitochondrial capacity

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TET2–STAT3–CXCL5 nexus promotes neutrophil lipid transfer to fuel lung adeno-to-squamous transition

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Diversification of transcription factor–DNA interactions and the evolution of gene regulatory networks

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Catalytic Nucleic Acids for Bioanalysis

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Effects of DNA Methylation on TFs in Human Embryonic Stem Cells

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Sex-differentiated placental methylation and gene expression regulation has implications for neonatal traits and adult diseases

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Epigenetic regulation by DNA methylation, histone modifications and chromatin remodeling complexes in controlling spermatogenesis and their dysfunction with male infertility

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Increased expression of interleukin-21-inducible genes in minor salivary glands are associated with primary Sjögren’s syndrome disease characteristics

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The landscape of accessible chromatin in quiescent cardiac fibroblasts and cardiac fibroblasts activated after myocardial infarction

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Comprehensive understanding of Tn5 insertion preference improves transcription regulatory element identification

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Epigenetic Studies of Chinese Herbal Medicine: Pleiotropic Role of DNA Methylation

Guo, W., Ma, H., Wang, C., Wan, J., Yao, H., & Yuan, C. (2021) · Frontiers in Pharmacology · doi:10.3389/fphar.2021.790321 · Cited by 21

Upregulation of ribosome biogenesis via canonical E-boxes is required for Myc-driven proliferation

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A review of epigenetics and its association with ageing of muscle and bone

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Epigenetic biomarkers for animal welfare monitoring

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Environmental effects on chromatin repression at imprinted genes and endogenous retroviruses

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Unliganded Progesterone Receptor Governs Estrogen Receptor Gene Expression by Regulating DNA Methylation in Breast Cancer Cells

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CDH2/N-cadherin and early diagnosis of invasion in patients with ductal carcinoma in situ

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High-Throughput Protein Production Combined with High- Throughput SELEX Identifies an Extensive Atlas of Ciona robusta Transcription Factor DNA-Binding Specificities

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Epigenetics and Ultraviolet Radiation: Implications for Skin Ageing and Carcinogenesis

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Meta-epigenetic shifts in T cell aging and aging-related dysfunction

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Modulating immune cell fate and inflammation through CRISPR-mediated DNA methylation editing

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Contribution of DNA methylation to the expression of FCGRT in human liver and myocardium

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Spatiotemporal specificity of correlated DNA methylation and gene expression pairs across different human tissues and stages of brain development

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Sex-specific epigenetic development in the mouse hypothalamic arcuate nucleus pinpoints human genomic regions associated with body mass index

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Mediation of the Same Epigenetic and Transcriptional Effect by Independent Osteoarthritis Risk–Conferring Alleles on a Shared Target Gene, COLGALT2

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Epigenetic and epitranscriptomic regulation of axon regeneration

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Altered Brain Expression of DNA Methylation and Hydroxymethylation Epigenetic Enzymes in a Rat Model of Neuropathic Pain

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Widespread effects of DNA methylation and intra-motif dependencies revealed by novel transcription factor binding models

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Interleukin 1β and Prostaglandin E2 affect expression of DNA methylating and demethylating enzymes in human gingival fibroblasts

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DNA sequence context as a marker of CpG methylation instability in normal and cancer tissues

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Cortical cellular diversity and development in schizophrenia

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MYCN in Neuroblastoma: “Old Wine into New Wineskins”

Braoudaki, M., Hatziagapiou, K., Zaravinos, A., & Lambrou, G. Ι. (2021) · Diseases · doi:10.3390/diseases9040078 · Cited by 22

Allele-specific transcription factor binding as a benchmark for assessing variant impact predictorsPreprint

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Integrative Single Cell Atlas Revealed Intratumoral Heterogeneity Generation from an Adaptive Epigenetic Cell State in Human Bladder Urothelial Carcinoma

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Temporally discordant chromatin accessibility and DNA demethylation define short- and long-term enhancer regulation during cell fate specification

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Cell lineage-specific methylome and genome alterations in gout

Tseng, C., Liao, W., Wong, M.-C., Chen, C., Lee, S., Yen, J., & Chang, S. (2021) · Aging · doi:10.18632/aging.202353 · Cited by 19

The broader phenotypic spectrum of congenital caudal abnormalities associated with mutations in the caudal type homeobox 2 gene

Stevens, S. J. C., Schrander-Stumpel, C. T. R. M., Diderich, K. E. M., van Slegtenhorst, M. A., Abbott, M., Manning, C., Balciuniene, J., Pyle, L. C., Leonard, J., Murrell, J. R., et al. (2021) · Clinical Genetics · doi:10.1111/cge.14076 · Cited by 17

Epigenetic activation of the elongator complex sensitizes gallbladder cancer to gemcitabine therapy

Xu, S., Jiang, C., Lin, R., Wang, X., Hu, X., Chen, W., Chen, X., & Chen, T. (2021) · Journal of Experimental & Clinical Cancer Research · doi:10.1186/s13046-021-02186-0 · Cited by 19

Transcription bursting and epigenetic plasticity: an updated view

Beckman, W. F., Jiménez, M. Á. L., & Verschure, P. J. (2021) · Epigenetics Communications · doi:10.1186/s43682-021-00007-1 · Cited by 22

Epigenetic Modification of Cytosines in Hematopoietic Differentiation and Malignant Transformation

An, J., & Ko, M. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms24021727 · Cited by 21

Covariation between glucocorticoid levels and receptor expression modulates embryo development and postnatal phenotypes in gulls

Ruiz‐Raya, F., Noguera, J. C., & Velando, A. (2023) · Hormones and Behavior · doi:10.1016/j.yhbeh.2023.105316 · Cited by 16

Robust enhancer-gene regulation identified by single-cell transcriptomes and epigenomes

Xie, F., Armand, E. J., Yao, Z., Liu, H., Bartlett, A., Behrens, M. M., Li, Y. E., Lucero, J. D., Luo, C., Nery, J. R., et al. (2023) · Cell Genomics · doi:10.1016/j.xgen.2023.100342 · Cited by 21

Paternal high-fat diet altered SETD2 gene methylation in sperm of F0 and F1 mice

Wei, S., Luo, S., Zhang, H., Li, Y., & Zhao, J. (2023) · Genes & Nutrition · doi:10.1186/s12263-023-00731-4 · Cited by 19

A DNA methylation signature in the stress driver gene Fkbp5 indicates a neuropathic component in chronic pain

Maiarù, M., Acton, R., Woźniak, E. L., Mein, C. A., Bell, C. G., & Géranton, S. M. (2023) · Clinical Epigenetics · doi:10.1186/s13148-023-01569-8 · Cited by 19

Annelid methylomes reveal ancestral developmental and aging-associated epigenetic erosion across Bilateria

Guynes, K., Sarre, L. A., Carrillo‐Baltodano, A. M., Davies, B. E., Xu, L., Liang, Y., Martín-Zamora, F. M., Hurd, P. J., de Mendoza, A., & Martín-Durán, J. M. (2024) · Genome biology · doi:10.1186/s13059-024-03346-z · Cited by 19

DNA methylation shapes the Polycomb landscape during the exit from naive pluripotency

Albert, J. R., Urli, T., Monteagudo, A., Breton, A. L., Sultanova, A., David, A., Scarpa, M., Schulz, M., & Greenberg, M. (2024) · Nature Structural & Molecular Biology · doi:10.1038/s41594-024-01405-4 · Cited by 18

Reversible promoter methylation determines fluctuating expression of acute phase proteins

Zhang, S., Wang, M., Feng, J.-R., Chang, Y., Ji, S., & Wu, Y. (2020) · eLife · doi:10.7554/elife.51317 · Cited by 20

Comparative analysis reveals distinctive epigenetic features of the human cerebellum

Guevara, E. E., Hopkins, W. D., Hof, P. R., Ely, J. J., Bradley, B. J., & Sherwood, C. C. (2021) · PLoS Genetics · doi:10.1371/journal.pgen.1009506 · Cited by 21

Transcription factors read epigenetics

Hughes, T. R., & Lambert, S. A. (2017) · Science · doi:10.1126/science.aan2927 · Cited by 21

Genome-wide quantification of the effects of DNA methylation on human gene regulationPreprint

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Epigenetic Reprogramming Drives Epithelial Disruption in Chronic Obstructive Pulmonary Disease

Yeung-Luk, B. H., Wally, A., Swaby, C., Jáuregui, S., Lee, E., Zhang, R., Chen, D., Luk, S., Upadya, N., Tieng, E., et al. (2023) · American Journal of Respiratory Cell and Molecular Biology · doi:10.1165/rcmb.2023-0147oc · Cited by 20

Ectopic expression of DNMT3L in human trophoblast stem cells restores features of the placental methylome

Lea, G., Doria-Borrell, P., Ferrero-Micó, A., Varma, A., Simon, C. S., Anderson, H., Biggins, L., Clercq, K. D., Andrews, S., Niakan, K. K., et al. (2025) · Cell stem cell · doi:10.1016/j.stem.2024.12.007 · Cited by 20

The Dynamic Regulation of G-Quadruplex DNA Structures by Cytosine Methylation

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Placental DNA methylation changes in gestational diabetes mellitus

Chen, F., Fei, X., Zhu, W., Zhang, Z., Shen, Y., Mao, Y., Zhu, Q., Xu, J., Zhou, W., Li, M., et al. (2022) · Epigenetics · doi:10.1080/15592294.2022.2110193 · Cited by 19

On the incongruence of genotype-phenotype and fitness landscapes

Srivastava, M., & Payne, J. L. (2022) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1010524 · Cited by 20

DNA methylation alterations at RE1-silencing transcription factor binding sites and their flanking regions in cancer

Vega-Benedetti, A. F., Loi, E., Moi, L., & Zavattari, P. (2023) · Clinical Epigenetics · doi:10.1186/s13148-023-01514-9 · Cited by 18

Relevance of DNA methylation at enhancers for the acquisition of cell identities

Kreibich, E., & Krebs, A. R. (2023) · FEBS Letters · doi:10.1002/1873-3468.14686 · Cited by 19

Prediction of G4 formation in live cells with epigenetic data: a deep learning approach

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Regulatory and evolutionary impact of DNA methylation in two songbird species and their naturally occurring F1 hybrids

Boman, J., Qvarnström, A., & Mugal, C. F. (2024) · BMC Biology · doi:10.1186/s12915-024-01920-2 · Cited by 21

Piecing together cis‐regulatory networks: insights from epigenomics studies in plants

Huang, S. C., & Ecker, J. R. (2017) · WIREs Systems Biology and Medicine · doi:10.1002/wsbm.1411 · Cited by 19

DNA methylation in Schwann cells and in oligodendrocytes

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Causes, effects, and clinical implications of perturbed patterns within the cancer epigenome

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