The DOI matches its Crossref record; 193 of the 193 references it cites were found in a registry or an index.
Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits
Abstract
Phylogeny and characteristics of ruminants: Ruminants are a diverse group of mammals that includes families containing well-known taxa such as deer, cows, and goats. However, their evolutionary relationships have been contentious, as have the origins of their distinctive digestive systems and headgear, including antlers and horns (see the Perspective by Ker and Yang). To understand the relationships among ruminants, L. Chen et al. sequenced 44 species representing 6 families and performed a phylogenetic analysis. From this analysis, they were able to resolve the phylogeny of many genera and document incomplete lineage sorting among major clades. Interestingly, they found evidence for large population reductions among many taxa starting at approximately 100,000 years ago, coinciding with the migration of humans out of Africa. Examining the bony appendages on the head—the so-called headgear—Wang et al. describe specific evolutionary changes in the ruminants and identify selection on cancer-related genes that may function in antler development in deer. Finally, Lin et al. take a close look at the reindeer genome and identify the genetic basis of adaptations that allow reindeer to survive in the harsh conditions of the Arctic. Science , this issue p. eaav6202 , p. eaav6335 , p. eaav6312 ; see also p. 1130
Overview
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“The improved continuity of our long-read assembly is evident by having a much higher contig and scaffold N50 values and lower contig and scaffold counts over the previously reported short-read assemblies for the muskox and other ruminant genomes assembled from short reads65.”
From Chromosomal-level reference genome assembly of muskox (Ovibos moschatus) from Banks Island in the Canadian Arctic, a resource for conservation genomics (2024) · cites this paper as [65]
Citations
Cites
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Altschul, S. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.17.3389 · Cited by 73,302
Trimmomatic: a flexible trimmer for Illumina sequence data
Bolger, A. M., Lohse, M., & Usadel, B. (2014) · Bioinformatics · doi:10.1093/bioinformatics/btu170 · Cited by 65,548
The Sequence Alignment/Map format and SAMtools
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R., & 1000 Genome Project Data Processing Subgroup (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp352 · Cited by 62,041
Fast gapped-read alignment with Bowtie 2
Langmead, B., & Salzberg, S. L. (2012) · Nature Methods · doi:10.1038/nmeth.1923 · Cited by 56,400
MUSCLE: multiple sequence alignment with high accuracy and high throughput
Edgar, R. C. (2004) · Nucleic Acids Research · doi:10.1093/nar/gkh340 · Cited by 44,662
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
Kumar, S., Stecher, G., & Tamura, K. (2016) · Molecular Biology and Evolution · doi:10.1093/molbev/msw054 · Cited by 43,923
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Stamatakis, A. (2014) · Bioinformatics · doi:10.1093/bioinformatics/btu033 · Cited by 32,291
HISAT: a fast spliced aligner with low memory requirements
Kim, D., Langmead, B., & Salzberg, S. L. (2015) · Nature Methods · doi:10.1038/nmeth.3317 · Cited by 24,112
BLAST+: architecture and applications
Camacho, C., Coulouris, G., Avagyan, V., Ma, N., Papadopoulos, J., Bealer, K., & Madden, T. L. (2009) · BMC Bioinformatics · doi:10.1186/1471-2105-10-421 · Cited by 22,074
The variant call format and VCFtools
Danecek, P., Auton, A., Abecasis, G. R., Albers, C. A., Banks, E., DePristo, M. A., Handsaker, R. E., Lunter, G. A., Marth, G., Sherry, S. T., et al. (2011) · Bioinformatics · doi:10.1093/bioinformatics/btr330 · Cited by 16,450
Flagged first, then by citations
Research works printed but not linked: 5
- C. M. B. Membrive Rumenology (Springer 2016).
- O. Toljagic Macroevolution With a Bite: Teeth Evolution and Diversification in Ruminants (Univ. Oslo Press 2018).
- M. Tarailo-Graovac N. Chen in Current Protocols in Bioinformatics (John Wiley & Sons 2002).
- F. Bibi, The fossil record and evolution of bovidae. Palaeontol. Electronica 12, 1–11 (2009).
- 10.1038/ncomms6188 · DOI
Cited by
Sorted by citations
Items 201–300 of 488
Wang, S., Sun, J., Li, C., Li, S., Fu, J., Jiangzuo, Q., Xing, L., & Yang, R. (2022) · Gondwana Research · doi:10.1016/j.gr.2022.10.012 · Cited by 7
Computational Reproducibility of Molecular Phylogenies
Kumar, S., Tao, Q., Lamarca, A. P., & Tamura, K. (2023) · Molecular Biology and Evolution · doi:10.1093/molbev/msad165 · Cited by 7
Azanza, B., Pina, M., Quiralte, V., Sánchez, I. M., & DeMiguel, D. (2022) · Historical Biology · doi:10.1080/08912963.2022.2050720 · Cited by 7
Lohay, G. G., Lee, D., Wu‐Cavener, L., Pearce, D. L., Hou, X., Bond, M. L., & Cavener, D. R. (2023) · Ecology and Evolution · doi:10.1002/ece3.10160 · Cited by 8
Li, J., Shang, S., Fang, N., Zhu, Y., Zhang, J., Irwin, D. M., Zhang, S., & Wang, Z. (2019) · G3 Genes Genomes Genetics · doi:10.1534/g3.119.400512 · Cited by 7
Self-citationOrganization of the Addax Major Histocompatibility Complex Provides Insights Into Ruminant Evolution
Li, C., Huang, R., Nie, F., Li, J., Zhu, W., Shi, X., Guo, Y., Chen, Y., Wang, S., Zhang, L., et al. (2020) · Frontiers in Immunology · doi:10.3389/fimmu.2020.00260 · Cited by 7
Self-citationGonçalves, M., SIEGISMUND, H. R., van Vuuren, B. J., Koepfli, K., Ferrand, N., & Godinho, R. (2021) · G3 Genes Genomes Genetics · doi:10.1093/g3journal/jkab002 · Cited by 7
Self-citationGenomes reveal pervasive distant hybridization in nature among cyprinid fishes
Ren, L., Tu, X., Luo, M., Liu, Q., Cui, J. J., Gao, X. R., Zhang, H., Tai, Y., Zeng, Y., Li, M., et al. (2025) · GigaScience · doi:10.1093/gigascience/giae117 · Cited by 6
Self-citationZhen, Y., Rahmat, A., Zhang, C., Lin, J., Ma, J., Zhong, Y., & Wang, M. (2025) · mSystems · doi:10.1128/msystems.00116-25 · Cited by 6
Self-citationTabata, E., Kobayashi, I., Morikawa, T., Kashimura, A., Bauer, P. O., & Oyama, F. (2023) · iScience · doi:10.1016/j.isci.2023.107254 · Cited by 6
Zhang, F., Shi, C., He, Q., Zhu, L., Zhao, J., Yao, W., Loor, J. J., & Luo, J. (2024) · Genomics · doi:10.1016/j.ygeno.2024.110873 · Cited by 7
Genome assembly of wisent (Bison bonasus) uncovers a deletion that likely inactivates the THRSP gene
Bortoluzzi, C., Mapel, X. M., Neuenschwander, S., Janett, F., Pausch, H., & Leonard, A. S. (2024) · Communications Biology · doi:10.1038/s42003-024-07295-y · Cited by 7
Alberdi, A., Limborg, M. T., Groussin, M., Aizpurua, O., & Gilbert, M. T. P. (2025) · Journal of Evolutionary Biology · doi:10.1093/jeb/voaf063 · Cited by 5
Self-citationRuminants: Evolutionary past and future impact
Ker, D. F. E., & Yang, Y. (2019) · Science · doi:10.1126/science.aax5182 · Cited by 6
Self-citationvan Hooft, P., Getz, W. M., Greyling, B. J., Zwaan, B. J., & Bastos, A. D. S. (2021) · PLoS ONE · doi:10.1371/journal.pone.0259685 · Cited by 6
He, J., Yao, Y., Dong, Z., Ruan, Y., Chang, Z., Zhao, R., Wang, W., & Li, X. (2022) · Archives of Insect Biochemistry and Physiology · doi:10.1002/arch.21957 · Cited by 6
Self-citationWang, X., Li, Q., & Tseng, Z. J. (2022) · Journal of Mammalian Evolution · doi:10.1007/s10914-022-09632-6 · Cited by 6
Self-citationPan, X., Ma, Z., Sun, X., Li, H., Zhang, T., Zhao, C., Wang, N., Heller, R., Wong, W. H., Wang, W., et al. (2022) · Genomics Proteomics & Bioinformatics · doi:10.1016/j.gpb.2022.11.007 · Cited by 6
Self-citationReindeer Rangifer tarandus (Linnaeus, 1758)
Holand, Ø., Андреевич, М. И., & Weladji, R. B. (2022) · Handbook of the mammals of Europe · doi:10.1007/978-3-030-24475-0_24 · Cited by 6
Genetic mechanism of body size variation in groupers: Insights from phylotranscriptomics
Zhang, W., 中山大学生命科学学院水产动物疫病防控与健康养殖全国重点实验室, 水., Weng, Z., Wang, X., Yang, Y., Li, D., Wang, L., Liu, X., Meng, Z., 南方海洋科学与工程广东省实验室(珠海), 广. 珠. 5., et al. (2023) · 动物学研究 · doi:10.24272/j.issn.2095-8137.2023.222 · Cited by 6
Self-citationContinent-wide genomic analysis of the African buffalo (Syncerus caffer)
Talenti, A., Wilkinson, T., Cook, E. A. J., Hemmink, J. D., Paxton, E. A., Munyao, M. M., Ngulu, S., Jayaraman, S., Bishop, R. P., Obara, I., et al. (2024) · Communications Biology · doi:10.1038/s42003-024-06481-2 · Cited by 6
Mennecart, B., Duranthon, F., & Costeur, L. (2024) · Journal of Anatomy · doi:10.1111/joa.14132 · Cited by 6
Optimization of the “in‐silico” mate‐pair method improves contiguity and accuracy of genome assembly
Zhou, T., Lu, L., & Li, C. (2023) · Ecology and Evolution · doi:10.1002/ece3.9745 · Cited by 5
Lopes, F., de Oliveira, L. R., Kessler, A., Beux, Y., Crespo, E. A., Cárdenas‐Alayza, S., Majluf, P., Sepúlveda, M., Brownell, R. L., Franco‐Trecu, V., et al. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.08.11.246108 · Cited by 6
Allele-specific expression reveals the phenotypic differences between thin- and fat-tailed sheepPreprint
Shao, J., He, S., Pan, X., Yang, Z., Nanaei, H. A., Chen, L., Li, R., Wang, Y., Gao, S., Xu, H., et al. (2020) · Research Square · doi:10.21203/rs.3.rs-56388/v1 · Cited by 6
Self-citationA multi-tissue atlas of genetic regulatory effects in sheepPreprint
Gong, M., Zhuang, Z., Sun, X., Xu, Y., Zhang, H.-H., Wang, Y., Guan, D., Li, R., Lu, X., Bai, Z., et al. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.11.03.686346 · Cited by 9
Self-citationConstructing a Draft Indian Cattle Pangenome Using Short-Read Sequencing
Azam, S., Sahu, A., Pandey, N. K., Neupane, M., Van Tassell, C. P., Rosen, B. D., Gandham, R. K., Rath, S. N., & Majumdar, S. S. (2025) · Communications Biology · doi:10.1038/s42003-025-07978-0 · Cited by 5
Advancing the Indian Cattle Pangenome: Characterizing Non-Reference Sequences in Bos indicus
Azam, S., Sahu, A., Pandey, N. K., Neupane, M., Van Tassell, C. P., Rosen, B. D., Gandham, R. K., Rath, S. N., & Majumdar, S. S. (2025) · Journal of Animal Science and Biotechnology · doi:10.1186/s40104-024-01133-1 · Cited by 5
Zhang, Z., Li, Q., Li, H., Wei, S., Yu, W., Peng, Z., Wei, F., & Zhou, W. (2024) · BMC Genomics · doi:10.1186/s12864-024-11149-6 · Cited by 6
Self-citationMusalizi, S., Schnyder, J., Ségalen, L., & Rössner, G. E. (2022) · Historical Biology · doi:10.1080/08912963.2022.2144285 · Cited by 5
Bolner, M., Bovo, S., Ballan, M., Schiavo, G., Taurisano, V., Ribani, A., Bertolini, F., & Fontanesi, L. (2024) · Genetics Selection Evolution · doi:10.1186/s12711-024-00930-6 · Cited by 5
Dai, Q., Wu, J., Chen, F., & Jiang, G. (2025) · AMB Express · doi:10.1186/s13568-025-01967-6 · Cited by 5
Whole-genome sequences restore the original classification of dabbling ducks (genus Anas)
Zhang, Z., Ai, H., & Huang, L. (2024) · Genetics Selection Evolution · doi:10.1186/s12711-024-00904-8 · Cited by 5
Orgebin, P., Dziomber, I., Aiglstorfer, M., & Mennecart, B. (2025) · Communications Biology · doi:10.1038/s42003-025-07898-z · Cited by 5
Moyano, S. R., Morales, M. M., & Giannini, N. P. (2019) · Canadian Journal of Zoology · doi:10.1139/cjz-2019-0038 · Cited by 5
Wu, J., Zhang, L., Shen, C., Sin, S. Y. W., Lei, C., & Zhao, H. (2022) · Integrative Zoology · doi:10.1111/1749-4877.12676 · Cited by 6
Вислобокова, И. А. (2023) · Paleontological Journal · doi:10.1134/s0031030123040147 · Cited by 5
Kamenova, S., de Muinck, E. J., Veiberg, V., Utsi, T. A., Steyaert, S. M. J. G., Albon, S. D., Loe, L. E., & Trosvik, P. (2023) · FEMS Microbiology Ecology · doi:10.1093/femsec/fiad157 · Cited by 5
Furni, F., Secchi, E. R., Speller, C., DenDanto, D., Ramp, C. A., Larsen, F., Mizroch, S. A., Robbins, J., Sears, R., Jorge Urbán, R., et al. (2024) · Systematic Biology · doi:10.1093/sysbio/syae049 · Cited by 5
Identification of Some Errors in the Genome Assembly of Bovidae by FISH
Lorenzi, L. D., & Parma, P. (2020) · Cytogenetic and Genome Research · doi:10.1159/000506221 · Cited by 5
Comparative genomics reveals evolutionary loss of epiplakin in cetaceans
FUCHS, P. C., Drexler, C., Ratajczyk, S., & Eckhart, L. (2022) · Scientific Reports · doi:10.1038/s41598-022-05087-0 · Cited by 4
Aiglstorfer, M., Wang, S., Cheng, J., Xing, L., Fu, J., & Mennecart, B. (2023) · Palaeogeography Palaeoclimatology Palaeoecology · doi:10.1016/j.palaeo.2023.111531 · Cited by 5
Do potent immobilising-opioids induce different physiological effects in impala and blesbok?
Vaughan‐Higgins, R., Laurence, M., Meyer, L. C. R., Laubscher, L., Raath, J. P., Warren, K. S., & Pfitzer, S. (2020) · Journal of the South African Veterinary Association · doi:10.4102/jsava.v91i0.2038 · Cited by 5
Li, X., Mao, C. P., He, J., Bin, X., Liu, G., Dong, Z., Zhao, R., Wan, X., & Li, X. (2024) · Scientific Data · doi:10.1038/s41597-024-03251-x · Cited by 5
Self-citationLok, S., Lau, T. N. H., Trost, B., Tong, A. H. Y., Paton, T., Wintle, R. F., Engstrom, M. D., Gunn, A., & Scherer, S. W. (2024) · Scientific Reports · doi:10.1038/s41598-024-67270-9 · Cited by 4
“The improved continuity of our long-read assembly is evident by having a much higher contig and scaffold N50 values and lower contig and scaffold counts over the previously reported short-read assemblies for the muskox and other ruminant genomes assembled from short reads 65 .”
BackgroundZahnow, F., Jäger, C., Mohamed, Y., Vogelhuber, G., May, F., Ciocan, A. M., Manieri, A., Maxeiner, S., Krasteva‐Christ, G., Schnappauf, O., et al. (2025) · Communications Biology · doi:10.1038/s42003-025-08436-7 · Cited by 4
Lu, S., Fang, C., Zeng, H., Hu, R., Wei, C., Miao, R., Gan, X., Guo, B., Yao, M., & He, S. (2025) · Science China Life Sciences · doi:10.1007/s11427-025-3074-8 · Cited by 7
Li, X., Tian, C., Zhuang, D., Shi, X., Tian, L., Bai, L., Gao, H., Zhou, H., Zhao, F., Dai, M., et al. (2025) · Microbiome · doi:10.1186/s40168-025-02232-5 · Cited by 7
Self-citationHan, Z.-P., Zhang, L.-L., Li, X., Zhu, L., Zhang, X., Zhou, W., & Liu, S. (2025) · BMC Genomics · doi:10.1186/s12864-025-11445-9 · Cited by 6
Heckeberg, N. S. (2025) · Fascinating life sciences · doi:10.1007/978-3-031-17756-9_1 · Cited by 4
A comparative review of short genetic variant databases across humans and animal species
Buren, S. L. V., Brown, C. T., Szmatoła, T., & Finno, C. J. (2025) · Briefings in Bioinformatics · doi:10.1093/bib/bbaf356 · Cited by 4
Convergent genomics and Arctic adaptation of ruminants
Tong, C. (2024) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2023.2448 · Cited by 4
Mouthbrooding behavior and sexual immune dimorphism in Indian perch Jaydia lineata
Zhang, Y., Wang, X., Yu, H., Zhong, J., Qu, M., Zhang, Y., Shan, B., Qin, G., Zhang, H., Huang, L., et al. (2024) · The Innovation Life · doi:10.59717/j.xinn-life.2024.100066 · Cited by 4
Self-citationIsabelline coloration: a heretofore unrecognized chromatic aberration in bighorn sheep
Bleich, V. C. (2024) · California Fish and Wildlife Journal · doi:10.51492/cfwj.110.8 · Cited by 4
Zheng, C., Chen, Q., Wong, M. H. G., Marx, N., Khotpathoom, T., Wang, H., Yang, F., Rao, X., Chan, B. P. L., & Liu, Y. (2024) · Evolutionary Applications · doi:10.1111/eva.70010 · Cited by 4
Genomic basis of non-human-primate diversity and adaptation
Roos, C., Seshadri, L., Zhang, L., Harris, R. A., Raveendran, M., Espinoza, S. H. C., Kuderna, L. F. K., Manu, S., Umapathy, G., Boubli, J. P., et al. (2025) · Nature Reviews Biodiversity · doi:10.1038/s44358-025-00039-8 · Cited by 5
Liu, H., Zhu, B., Wang, T., Dong, Y., Ju, Y., Li, Y., Su, W., Zhang, R., Dong, S., Wang, H., et al. (2025) · BMC Genomics · doi:10.1186/s12864-025-11541-w · Cited by 6
Self-citationGenetic diversity of cytochrome b in Iberian ibex from Andalusia
Márquez, F. J., Granados, J. E., Carúz, A., Soriguer, R. C., Fandós, P., Cano-Manuel, F. J., & Pérez, J. M. (2020) · Mammalian Biology · doi:10.1007/s42991-020-00077-z · Cited by 4
A Chromosome-Scale Genome Assembly of the Okapi (Okapia Johnstoni)
Winter, S., Coimbra, R. T. F., Helsen, P., & Janke, A. (2022) · Journal of Heredity · doi:10.1093/jhered/esac033 · Cited by 4
Comparative Studies of Karyotypes in the Cervidae Family
Proskuryakova, A. A., Ivanova, E. S., Perelman, P. L., Ferguson-Smith, M. A., Yang, F., Okhlopkov, I. M., & Graphodatsky, A. S. (2022) · Cytogenetic and Genome Research · doi:10.1159/000527349 · Cited by 5
Vertebrate genomics and adaptation – Status and prospects in Africa
Ishengoma, E. (2023) · Molecular Ecology · doi:10.1111/mec.16936 · Cited by 4
Yu, Y., Gao, H., Li, Q., & Ni, X. (2023) · Journal of Systematic Palaeontology · doi:10.1080/14772019.2023.2189436 · Cited by 4
Self-citationJabin, G., Joshi, B. D., Wang, M., Mukherjee, T., Dolker, S., Wang, S., Chandra, K., Venkatraman, C., Sharma, L. K., & Thakur, M. K. (2023) · Biology · doi:10.3390/biology12081097 · Cited by 6
Colangelo, P., Civita, M. D., Bento, C., Franchini, P., Meyer, A., Orel, N., Neves, L., Mulandane, F. C., Almeida, J., Senczuk, G., et al. (2024) · BMC Ecology and Evolution · doi:10.1186/s12862-024-02209-2 · Cited by 6
Humble, E., Dobrynin, P. V., Senn, H., Chuven, J., Scott, A. F., Mohr, D. W., Dudchenko, O., Omer, A. D., Colaric, Z., Aiden, E. L., et al. (2019) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/867341 · Cited by 4
Tracing the origin of a new organ by inferring the genetic basis of rumen evolutionPreprint
Pan, X., Wang, Y., Li, Z., Chen, X., Heller, R., Wang, N., Zhao, C., Cai, Y., Xu, H., Li, S., et al. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.02.19.955872 · Cited by 4
Self-citationLi, Z., Xu, Z., Zhu, L., Qin, T., Ma, J., Feng, Z., Yue, H., Guan, Q., Zhou, B., Han, G., et al. (2024) · Genome Research · doi:10.1101/gr.279448.124 · Cited by 4
Self-citationDraft Genome Assembly of an Iconic Arctic Species: Muskox (Ovibos moschatus)
Prewer, E., Kutz, S., Leclerc, L.-M., & Kyle, C. J. (2022) · Genes · doi:10.3390/genes13050809 · Cited by 3
Ureaplasma ceti sp. nov. isolated from the gastric fluid of a spotted dolphin (Stenella attenuata)
Segawa, T., Nakajima, Y., Yamamoto, K., Kishima, S., & Itou, T. (2025) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijsem.0.006712 · Cited by 3
Tang, S., Yin, S., Wu, Y., & Sun, Y. (2025) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2025.108444 · Cited by 3
Long, J., He, W.-C., Zhou, X., Cao, G., Peng, H., Erst, T. V., Erst, A. S., Wang, W., & Xiang, K. (2025) · BMC Plant Biology · doi:10.1186/s12870-025-08009-0 · Cited by 3
Self-citationHe, M.-Q., Yang, W.-Q., Phurbu, D., Liu, F., Li, J., Cao, B., & Zhao, R.-L. (2026) · IMA Fungus · doi:10.3897/imafungus.17.167329 · Cited by 3
Self-citationSupapannachart, P., Jenjaroenpun, P., Wongsurawat, T., Tangphatsornruang, S., Pootakham, W., Sonthirod, C., Tongsima, S., Wangkumhang, P., Wilantho, A., Thongphakdee, A., et al. (2026) · Animal Genetics · doi:10.1002/age.70093 · Cited by 3
Panis, D. N. D., Arantes, L. S., Brown, T., Somenzi, E., Wibbelt, G., Ballaco, J., Mountcastle, J., Brajuka, N., Joardar, V., Fedrigo, O. D., et al. (2026) · BMC Genomics · doi:10.1186/s12864-026-12821-9 · Cited by 3
Self-citationLi, Y., Shi, M., Zhang, B., Wu, J., Wang, Y., Li, M., Wu, Y., Hu, X., Hu, D., Huang, Z. L., et al. (2022) · PLoS ONE · doi:10.1371/journal.pone.0276542 · Cited by 3
Self-citationHe, J., Li, J., Gao, Q., Shen, W., Liu, W., Xia, M., Xiao, H., & Xiao, D. (2024) · Animals · doi:10.3390/ani14111657 · Cited by 3
Self-citationSánchez, I. M., Cantalapiedra, J. L., DeMiguel, D., Azanza, B., Strani, F., & Morales, J. (2024) · Journal of Systematic Palaeontology · doi:10.1080/14772019.2024.2386020 · Cited by 3
Chromosome-level dairy goat genome reveals the regulatory landscape of lactation
He, Q., Zhang, F., Zhang, X., Yao, W., Wu, J., Niu, H., Wang, Y., & Luo, J. (2024) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2024.135968 · Cited by 3
Self-citationGenomic Insights into Genetic Basis of Evolutionary Conservatism and Innovation in Frogs
Zuo, B., Chen, R.-M., Tang, X., Shao, Y., Liu, X., Nneji, L. M., & Sun, Y. (2024) · Integrative Zoology · doi:10.1111/1749-4877.12931 · Cited by 4
Nine high-quality Anas genomes provide insights into Anas evolution and domestication
Zhang, Z., Ni, Z., Li, T., Ning, M., Gao, C., Hu, J., Han, M., Yang, J., Wu, F., Chen, L., et al. (2025) · Cell Reports · doi:10.1016/j.celrep.2025.115477 · Cited by 3
Self-citationEscobedo-Morales, L. A., Castañeda‐Rico, S., Mandujano, S., León‐Paniagua, L., Martínez‐Meyer, E., & Maldonado, J. E. (2025) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2025.108400 · Cited by 3
KegAlign: optimizing pairwise alignments with diagonal partitioning
Gulhan, A. B., Burhans, R. C., Harris, R., Kandemir, M., Haeussler, M., & Nekrutenko, A. (2025) · Genome biology · doi:10.1186/s13059-025-03830-0 · Cited by 2
Reindeer Rangifer tarandus (Linnaeus, 1758)
Holand, Ø., Андреевич, М. И., & Weladji, R. B. (2022) · Handbook of the mammals of Europe · doi:10.1007/978-3-319-65038-8_24-1 · Cited by 3
Bovidae (Mammalia) from the early Middle Miocene of Maboko, Kenya
Geraads, D., McCrossin, M. L., & Benefit, B. R. (2023) · Historical Biology · doi:10.1080/08912963.2023.2179397 · Cited by 3
He, Q., Li, Z., Liu, Y., Yang, H., Liu, L.-Z., Ren, Y., Zheng, J., Xu, R., Wang, S., & Zhan, Q. (2023) · The Plant Genome · doi:10.1002/tpg2.20345 · Cited by 3
Self-citationAmplification of Ovis aries papillomavirus type 2 DNA from an ovine cutaneous fibropapilloma
Munday, J. S., Klobukowska, H. J., & Nicholson, K. (2023) · Veterinary Dermatology · doi:10.1111/vde.13207 · Cited by 3
Ruminant livestock TR V(D)J genes and CDR3 repertoire
Wu, F., Deng, Y., Yao, X., & Li, J. (2024) · Veterinary Immunology and Immunopathology · doi:10.1016/j.vetimm.2024.110829 · Cited by 3
Molecular evidence for adaptive evolution of olfactory-related genes in cervids
Ba, H., Qin, T., Cai, Z., Liu, W., & Li, C. (2020) · Genes & Genomics · doi:10.1007/s13258-019-00911-w · Cited by 3
Self-citationCentromere drive and suppression by parallel pathways for recruiting microtubule destabilizersPreprint
Kumon, T., Ma, J., Stefanik, D. J., Nordgren, E. C., Akins, R. B., Kim, J., Levine, M. T., & Lampson, M. A. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.11.26.400515 · Cited by 3
Rachtman, E., Sarmashghi, S., Bafna, V., & Mirarab, S. (2021) · SSRN Electronic Journal · doi:10.2139/ssrn.3986497 · Cited by 3
Self-citationLi, X., Chen, T., Zhuang, D., Tian, L., Shi, X., Bai, Y., Gao, H., Zhou, H., Zhao, F., Dai, M., et al. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.05.16.491731 · Cited by 3
A foundational description of Antilocapra americana pronghorn core osteohistology
Slenker, K. W., Woodward, H. N., & O'Brien, H. D. (2024) · The Anatomical Record · doi:10.1002/ar.25370 · Cited by 2
Evolutionary insights of interferon lambda genes in tetrapods
Gautam, D., Sindhu, A., Vats, A., Rajput, S., Rana, C., & De, S. (2024) · Journal of Evolutionary Biology · doi:10.1093/jeb/voae094 · Cited by 2
Wang, J., Yuan, W., Liu, F., Liu, G., Geng, X., Li, C., Zhang, C., Li, N., & Li, X. (2024) · Journal of genetics and genomics/Journal of Genetics and Genomics · doi:10.1016/j.jgg.2024.10.008 · Cited by 3
Self-citationEarly Miocene fossils from Shaoma, China, evidence Eurasia-North America ruminant exchange
Wang, S., Deng, T., Peng, T., Wang, B., Jiangzuo, Q., Fu, J., Sun, D., & Xing, L. (2025) · Geobios · doi:10.1016/j.geobios.2025.06.002 · Cited by 2
Self-citationYu, J., Li, S., Zhao, D., Martin, F. M., & Yuan, H. (2025) · Journal of Systematics and Evolution · doi:10.1111/jse.70006 · Cited by 2
Genomic insights into chromosomal fusion and its evolutionary implications for zokors
Kuang, Z., Yang, X., Wan, N., Chen, J., Duan, Q., Li, B., Liu, X., Liang, X., Liu, X., Liu, W., et al. (2026) · Molecular Biology and Evolution · doi:10.1093/molbev/msag032 · Cited by 2
Self-citationKuang, W., Zhang, H., Jiang, Y., Hu, H., Huang, W., Zhang, Y., Wu, X., & Yu, L. (2026) · Science China Life Sciences · doi:10.1007/s11427-025-3180-4 · Cited by 2
Self-citationThe Draft Genome of Red Lechwe, Kobus leche leche
Wang, B., Wang, Z., Zhou, J., Liu, W., Lin, Z., Zhang, C., Liu, G., Zhou, B., Wan, W., Zhao, R., et al. (2020) · Frontiers in Genetics · doi:10.3389/fgene.2020.582638 · Cited by 2
Self-citationKolora, S. R. R., Gysi, D. M., Schaffer, S., Grimm‐Seyfarth, A., Szabolcs, M., Faria, R., Henle, K., Stadler, P. F., Schlegel, M., & Nowick, K. (2021) · Genome Biology and Evolution · doi:10.1093/gbe/evab109 · Cited by 2
Metadata
- Authors
- Chen, L., Qiu, Q., Jiang, Y., Wang, K., Lin, Z., Li, Z., Bibi, F., Yang, Y., Wang, J., Nie, W., Su, W., Liu, G., Li, Q., Fu, W., Pan, X., Liu, C., Yang, J., Zhang, C., Yin, Y., Wang, Y., Zhao, Y., Zhang, C., Wang, Z., Qin, Y., Liu, W., Wang, B., Ren, Y., Zhang, R., Zeng, Y., da Fonseca, R. R., Wei, B., Li, R., Wan, W., Zhao, R., Zhu, W., Wang, Y., Duan, S., Gao, Y., Zhang, Y. E., Chen, C., Hvilsom, C., Epps, C. W., Chemnick, L. G., Dong, Y., Mirarab, S., Siegismund, H. R., Ryder, O. A., Gilbert, M. T. P., Lewin, H. A., Zhang, G., Heller, R., & Wang, W.
- Affiliations
- Northwestern Polytechnical University (CN)
- Northwest A&F University (CN)
- Chinese Academy of Agricultural Sciences (CN)
- Museum für Naturkunde (DE)
- Lanzhou University (CN)
- Kunming Institute of Zoology (CN)
- China National GeneBank (CN)
- Kashi University (CN)
- State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China.
- Section for Computational and RNA Biology, Department of Biology, University of Copenhagen, DK-2100 Copenhagen, Denmark.
- Nowbio Biotechnology Company, Kunming 650201, China.
- Chinese Academy of Sciences (CN)
- Copenhagen Zoo (DK)
- Oregon State University (US)
- San Diego Zoo Institute for Conservation Research (US)
- Yunnan Agricultural University (CN)
- University of California San Diego (US)
- University of Copenhagen (DK)
- University of California, Davis (US)
- Corresponding author
- Chen, Lei
- Qiu, Qiang
- Jiang, Yu
- Wang, Kun
- Lin, Zeshan
- Li, Zhipeng
- Zhang, Guojie
- Heller, Rasmus
- Wang, Wen
- ORCID
- Chen, Lei
- Qiu, Qiang
- Jiang, Yu
- Wang, Kun
- Lin, Zeshan
- Li, Zhipeng
- Bibi, Faysal
- Yang, Yongzhi
- Liu, Guichun
- Li, Qiye
- Fu, Weiwei
- Pan, Xiangyu
- Liu, Chang
- Yang, Jie
- Zhang, Chenzhou
- Yin, Yuan
- Wang, Yu
- Zhao, Yue
- Zhang, Chen
- Wang, Zhongkai
- Qin, Yanli
- Liu, Wei
- Wang, Bao
- Ren, Yandong
- Zhang, Ru
- Zeng, Yan
- da Fonseca, Rute R.
- Wei, Bin
- Li, Ran
- Wan, Wenting
- Zhao, Ruoping
- Zhu, Wenbo
- Wang, Yutao
- Duan, Shengchang
- Gao, Yun
- Zhang, Yong E.
- Chen, Chunyan
- Hvilsom, Christina
- Epps, Clinton W.
- Dong, Yang
- Mirarab, Siavash
- Siegismund, Hans Redlef
- Ryder, Oliver A.
- Gilbert, M. Thomas P.
- Lewin, Harris A.
- Zhang, Guojie
- Heller, Rasmus
- Wang, Wen
- Venue
- Science
- Published
- 2019-06-21
- Volume
- 364
- Issue
- 6446
- ISSN
- 0036-8075 (ISSN-L)
- 1095-9203
- OpenAlex
- W2953226067
- Cited by
- 441
- References
- 193
- Citations by year
- 2026: 34 · 2025: 64 · 2024: 87 · 2023: 55 · 2022: 82 · 2021: 61 · 2020: 41 · 2019: 15
- FWCI
- 17.36
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Science (publishedVersion)
- PubMed (publishedVersion)
- Lanzhou University Institutional Repository (submittedVersion)
- Research at the University of Copenhagen (University of Copenhagen) (submittedVersion)
- Funders
- National Natural Science Foundation of China (31501984, 31822052)
- Fundamental Research Funds for the Central Universities (3102019JC007)
- National Program for Support of Top-notch Young Professionals
- Lundbeck Fellowship (R190-2014-2827)
- Carlsberg Foundation (CF16-0663)
- 1000 Talent Project of Shaanxi Province
- Strategic Priority Research Program of CAS (XDB13000000)
- Talents Team Construction Fund of Northwestern Polytechnical University
- Villum Foundation Young Investigator (VKR023447)
- Central Public-interest Scientific Institution Basal Research Fund (Y2019GH13)
- Villum Investigator Grant
- Danish National Research Foundation for its support of the Center for Macroecology, Evolution, and Climate (DNRF96)
- Natural science foundation from Jilin province (20170101158JC)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Physical Sciences › Earth and Planetary Sciences › Paleontology › Evolution and Paleontology Studies
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic and phenotypic traits in livestock
- Keywords
- ruminants, ruminant evolution, incomplete lineage sorting, population bottleneck, human migration out of Africa, horn evolution, cancer genes, deer, reindeer, Arctic adaptation, genomic selection
- MeSH terms
- Animals, Phylogeny, Ruminants, Genome, Sequence Analysis, DNA, Evolution, Molecular
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
