The DOI matches its Crossref record; 193 of the 193 references it cites were found in a registry or an index.
Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits
Abstract
Phylogeny and characteristics of ruminants: Ruminants are a diverse group of mammals that includes families containing well-known taxa such as deer, cows, and goats. However, their evolutionary relationships have been contentious, as have the origins of their distinctive digestive systems and headgear, including antlers and horns (see the Perspective by Ker and Yang). To understand the relationships among ruminants, L. Chen et al. sequenced 44 species representing 6 families and performed a phylogenetic analysis. From this analysis, they were able to resolve the phylogeny of many genera and document incomplete lineage sorting among major clades. Interestingly, they found evidence for large population reductions among many taxa starting at approximately 100,000 years ago, coinciding with the migration of humans out of Africa. Examining the bony appendages on the head—the so-called headgear—Wang et al. describe specific evolutionary changes in the ruminants and identify selection on cancer-related genes that may function in antler development in deer. Finally, Lin et al. take a close look at the reindeer genome and identify the genetic basis of adaptations that allow reindeer to survive in the harsh conditions of the Arctic. Science , this issue p. eaav6202 , p. eaav6335 , p. eaav6312 ; see also p. 1130
Overview
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“The improved continuity of our long-read assembly is evident by having a much higher contig and scaffold N50 values and lower contig and scaffold counts over the previously reported short-read assemblies for the muskox and other ruminant genomes assembled from short reads65.”
From Chromosomal-level reference genome assembly of muskox (Ovibos moschatus) from Banks Island in the Canadian Arctic, a resource for conservation genomics (2024) · cites this paper as [65]
Citations
Cites
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Altschul, S. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.17.3389 · Cited by 73,302
Trimmomatic: a flexible trimmer for Illumina sequence data
Bolger, A. M., Lohse, M., & Usadel, B. (2014) · Bioinformatics · doi:10.1093/bioinformatics/btu170 · Cited by 65,548
The Sequence Alignment/Map format and SAMtools
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R., & 1000 Genome Project Data Processing Subgroup (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp352 · Cited by 62,041
Fast gapped-read alignment with Bowtie 2
Langmead, B., & Salzberg, S. L. (2012) · Nature Methods · doi:10.1038/nmeth.1923 · Cited by 56,400
MUSCLE: multiple sequence alignment with high accuracy and high throughput
Edgar, R. C. (2004) · Nucleic Acids Research · doi:10.1093/nar/gkh340 · Cited by 44,662
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
Kumar, S., Stecher, G., & Tamura, K. (2016) · Molecular Biology and Evolution · doi:10.1093/molbev/msw054 · Cited by 43,923
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Stamatakis, A. (2014) · Bioinformatics · doi:10.1093/bioinformatics/btu033 · Cited by 32,291
HISAT: a fast spliced aligner with low memory requirements
Kim, D., Langmead, B., & Salzberg, S. L. (2015) · Nature Methods · doi:10.1038/nmeth.3317 · Cited by 24,112
BLAST+: architecture and applications
Camacho, C., Coulouris, G., Avagyan, V., Ma, N., Papadopoulos, J., Bealer, K., & Madden, T. L. (2009) · BMC Bioinformatics · doi:10.1186/1471-2105-10-421 · Cited by 22,074
The variant call format and VCFtools
Danecek, P., Auton, A., Abecasis, G. R., Albers, C. A., Banks, E., DePristo, M. A., Handsaker, R. E., Lunter, G. A., Marth, G., Sherry, S. T., et al. (2011) · Bioinformatics · doi:10.1093/bioinformatics/btr330 · Cited by 16,450
Flagged first, then by citations
Research works printed but not linked: 5
- C. M. B. Membrive Rumenology (Springer 2016).
- O. Toljagic Macroevolution With a Bite: Teeth Evolution and Diversification in Ruminants (Univ. Oslo Press 2018).
- M. Tarailo-Graovac N. Chen in Current Protocols in Bioinformatics (John Wiley & Sons 2002).
- F. Bibi, The fossil record and evolution of bovidae. Palaeontol. Electronica 12, 1–11 (2009).
- 10.1038/ncomms6188 · DOI
Cited by
Sorted by citations
Dense sampling of bird diversity increases power of comparative genomics
Feng, S., Stiller, J., Deng, Y., Armstrong, J., Fang, Q., Reeve, A. H., Xie, D., Chen, G., Guo, C., Faircloth, B. C., et al. (2020) · Nature · doi:10.1038/s41586-020-2873-9 · Cited by 459
Self-citationGuo, J., Xu, W., Hu, Y., Huang, J., Zhao, Y., Zhang, L., Huang, C., & Mā, H. (2020) · Molecular Plant · doi:10.1016/j.molp.2020.05.011 · Cited by 204
Self-citationGenetic basis of ruminant headgear and rapid antler regeneration
Wang, Y., Zhang, C., Wang, N., Li, Z., Heller, R., Liu, R., Zhao, Y., Han, J., Pan, X., Zheng, Z., et al. (2019) · Science · doi:10.1126/science.aav6335 · Cited by 186
Self-citationThe origin of domestication genes in goats
Zheng, Z., Wang, X., Li, M., Li, Y., Yang, Z., Wang, X., Pan, X., Gong, M., Zhang, Y., Guo, Y., et al. (2020) · Science Advances · doi:10.1126/sciadv.aaz5216 · Cited by 184
Self-citationLv, F., Cao, Y.-H., Liu, G., Luo, L.-Y., Lu, R., Liu, M., Li, W., Zhou, P., Wang, X., Shen, M., et al. (2021) · Molecular Biology and Evolution · doi:10.1093/molbev/msab353 · Cited by 185
Self-citationPhylogenomic analyses provide insights into primate evolution
Shao, Y., Zhou, L., Li, F., Zhao, L., Zhang, B.-L., Shao, F., Chen, J., Chen, C., Bi, X., Zhuang, X.-L., et al. (2023) · Science · doi:10.1126/science.abn6919 · Cited by 185
Self-citationThe systematics of the Cervidae: a total evidence approach
Heckeberg, N. S., & Wörheide, G. (2020) · PeerJ · doi:10.7717/peerj.8114 · Cited by 160
Schnittger, L., Ganzinelli, S., Bhoora, R. V., Omondi, D., Nijhof, A. M., & Florin‐Christensen, M. (2022) · Parasitology Research · doi:10.1007/s00436-022-07424-8 · Cited by 139
Understanding the role of rumen epithelial host-microbe interactions in cattle feed efficiency
Na, S. W., & Guan, L. L. (2022) · Animal nutrition · doi:10.1016/j.aninu.2022.04.002 · Cited by 131
Feng, J., Luo, R., Dai, X., Liu, H., Yu, G., Han, S., Lü, X., Su, C., Chen, Q., Song, Q., et al. (2020) · Molecular Plant · doi:10.1016/j.molp.2020.05.005 · Cited by 119
Self-citationComparative genomics provides insights into the aquatic adaptations of mammals
Yuan, Y., Zhang, Y., Zhang, P., Liu, C., Wang, J., Gao, H., Hoelzel, A. R., Seim, I., Lv, M., Lin, M., et al. (2021) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2106080118 · Cited by 119
Self-citationWhole-genome analysis of giraffe supports four distinct species
Coimbra, R. T. F., Winter, S., Kumar, V., Koepfli, K.-P., Gooley, R. M., Dobrynin, P., Fennessy, J., & Janke, A. (2021) · Current Biology · doi:10.1016/j.cub.2021.04.033 · Cited by 102
Ancient and modern genomes unravel the evolutionary history of the rhinoceros family
Liu, S., Westbury, M. V., Dussex, N., Mitchell, K. J., Sinding, M.-H. S., Heintzman, P. D., Duchêne, D. A., Kapp, J. D., von Seth, J., Heiniger, H., et al. (2021) · Cell · doi:10.1016/j.cell.2021.07.032 · Cited by 101
Self-citationGong, Y., Li, Y., Liu, X., Ma, Y., & Jiang, L. (2023) · Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology · doi:10.1186/s40104-023-00860-1 · Cited by 112
Genomic insights into the phylogeny and biomass-degrading enzymes of rumen ciliates
Li, Z., Wang, X., Zhang, Y., Yu, Z., Zhang, T., Dai, X., Pan, X., Jing, R., Yan, Y., Liu, Y., et al. (2022) · The ISME Journal · doi:10.1038/s41396-022-01306-8 · Cited by 100
Self-citationBiological adaptations in the Arctic cervid, the reindeer ( Rangifer tarandus )
Lin, Z., Chen, L., Chen, X., Zhong, Y., Yang, Y., Xia, W., Liu, C., Zhu, W., Wang, H., Yan, B., et al. (2019) · Science · doi:10.1126/science.aav6312 · Cited by 89
Self-citationGenetics of the phenotypic evolution in sheep: a molecular look at diversity-driving genes
Kalds, P., Zhou, S., Gao, Y., Cai, B., Huang, S., Chen, Y., & Wang, X. (2022) · Genetics Selection Evolution · doi:10.1186/s12711-022-00753-3 · Cited by 85
Self-citationBergman, J., Pedersen, R. Ø., Lundgren, E. J., Lemoine, R. T., Monsarrat, S., Pearce, E. A., Schierup, M. H., & Svenning, J. (2023) · Nature Communications · doi:10.1038/s41467-023-43426-5 · Cited by 91
Liu, C., Gao, J., Cui, X., Li, Z., Chen, L., Yuan, Y., Zhang, Y., Mei, L., Zhao, L., Cai, D., et al. (2021) · Science Advances · doi:10.1126/sciadv.abe9459 · Cited by 82
Self-citationTaxonomy, phylogeny and identification of Chaetomiaceae with emphasis on thermophilic species
Wang, X. W., Han, P. J., Bai, F., Luo, A., Bensch, K., Meijer, M., Kraak, B., Han, D.-Y., Sun, B. D., Crous, P. W., et al. (2022) · Studies in Mycology · doi:10.3114/sim.2022.101.03 · Cited by 81
Parallel pathways for recruiting effector proteins determine centromere drive and suppression
Kumon, T., Ma, J., Akins, R. B., Stefanik, D. J., Nordgren, E., Kim, J., Levine, M. T., & Lampson, M. A. (2021) · Cell · doi:10.1016/j.cell.2021.07.037 · Cited by 73
LRScaf: improving draft genomes using long noisy reads
Mao, Q., Wu, S., Li, A., Zhao, F., Hu, F., Ding, L., Chang, Y., & Ruan, J. (2019) · BMC Genomics · doi:10.1186/s12864-019-6337-2 · Cited by 74
Ancient Demographics Determine the Effectiveness of Genetic Purging in Endangered Lizards
Xie, H., Liang, X., Chen, Z., Li, W.-M., Mi, C., Li, M., Wu, Z., Zhou, X., & Du, W. (2021) · Molecular Biology and Evolution · doi:10.1093/molbev/msab359 · Cited by 68
Janzen, A., Richter, K. K., Mwebi, O., Brown, S., Onduso, V., Gatwiri, F., Ndiema, E., Katongo, M., Goldstein, S. T., Douka, K., et al. (2021) · PLoS ONE · doi:10.1371/journal.pone.0251061 · Cited by 71
Yin, Y., Fan, H., Zhou, B., Hu, Y., Fan, G., Wang, J., Zhou, F., Nie, W., Zhang, C., Liu, L., et al. (2021) · Nature Communications · doi:10.1038/s41467-021-27091-0 · Cited by 69
Self-citationWu, C., Ma, Z.-Y., Zheng, G., Zou, S., Zhang, X., & Zhang, Y. (2022) · BMC Genomics · doi:10.1186/s12864-022-08503-x · Cited by 68
Self-citationLopes, F., de Oliveira, L. R., Kessler, A., Beux, Y., Crespo, E. A., Cárdenas‐Alayza, S., Majluf, P., Sepúlveda, M., Brownell, R. L., Franco‐Trecu, V., et al. (2020) · Systematic Biology · doi:10.1093/sysbio/syaa099 · Cited by 64
RGD v2.0: a major update of the ruminant functional and evolutionary genomics database
Fu, W., Wang, R., Nanaei, H. A., Wang, J., Hu, D., & Jiang, Y. (2021) · Nucleic Acids Research · doi:10.1093/nar/gkab887 · Cited by 66
Self-citationWu, J., Zhu, S., Gu, F., Valencak, T. G., Liu, J., & Sun, H. (2021) · Journal of Advanced Research · doi:10.1016/j.jare.2021.11.009 · Cited by 64
Analysis of muntjac deer genome and chromatin architecture reveals rapid karyotype evolution
Mudd, A. B., Bredeson, J. V., Baum, R., Hockemeyer, D. F., & Rokhsar, D. S. (2020) · Communications Biology · doi:10.1038/s42003-020-1096-9 · Cited by 61
An atlas of CNV maps in cattle, goat and sheep
Huang, Y., Li, Y., Wang, X., Yu, J., Cai, Y., Zheng, Z., Li, R., Zhang, S., Chen, N., Nanaei, H. A., et al. (2021) · Science China Life Sciences · doi:10.1007/s11427-020-1850-x · Cited by 62
Self-citationLucena-Pérez, M., Marmesat, E., Kleinman‐Ruiz, D., Martínez‐Cruz, B., Wȩcek, K., Saveljev, A. P., Seryodkin, I. V., Okhlopkov, I. M., Dvornikov, M. G., Ozoliņš, J., et al. (2020) · Molecular Ecology · doi:10.1111/mec.15366 · Cited by 61
Chromosome‐level genome assembly of Lethenteron reissneri provides insights into lamprey evolution
Zhu, T., Li, Y., Pang, Y., Han, Y., Li, J., Wang, Z., Liu, X., Li, H., Hua, Y., Jiang, H., et al. (2020) · Molecular Ecology Resources · doi:10.1111/1755-0998.13279 · Cited by 62
Self-citationLi, R., Yang, P., Li, M., Fang, W., Yue, X., Nanaei, H. A., Gan, S., Du, D., Cai, Y., Dai, X., et al. (2020) · Science China Life Sciences · doi:10.1007/s11427-020-1807-0 · Cited by 57
Self-citationChiu, L., & Gilbert, S. F. (2020) · Elsevier eBooks · doi:10.1016/b978-0-12-817996-3.00015-3 · Cited by 55
Mackiewicz, P., Matosiuk, M., Świsłocka, M., Zachos, F. E., Hajji, G. M., Saveljev, A. P., Seryodkin, I. V., Farahvash, T., Rezaei, H. R., Torshizi, R. V., et al. (2022) · Scientific Reports · doi:10.1038/s41598-022-20763-x · Cited by 54
Symbiotic organs: the nexus of host–microbe evolution
Fronk, D. C., & Sachs, J. L. (2022) · Trends in Ecology & Evolution · doi:10.1016/j.tree.2022.02.014 · Cited by 53
Yang, L., Wei, F., Zhan, X., Fan, H., Zhao, P., Huang, G., Chang, J., Lei, Y., & Hu, Y. (2022) · Molecular Biology and Evolution · doi:10.1093/molbev/msac111 · Cited by 54
CASTER: Direct species tree inference from whole-genome alignments
Zhang, C., Nielsen, R., & Mirarab, S. (2025) · Science · doi:10.1126/science.adk9688 · Cited by 51
Self-citationWestbury, M. V., Hartmann, S. A., Barlow, A., Preick, M., Ridush, B., Nagel, D., Rathgeber, T., Ziegler, R., Baryshnikov, G., Sheng, G., et al. (2020) · Science Advances · doi:10.1126/sciadv.aay0456 · Cited by 55
Self-citationEvolutionary Constraint on Visual and Nonvisual Mammalian Opsins
Upton, B. A., Díaz, N. M., Gordon, S. A., Gelder, R. N. V., Buhr, E. D., & Lang, R. A. (2021) · Journal of Biological Rhythms · doi:10.1177/0748730421999870 · Cited by 54
Wen, H., Luo, T., Yali, W. A. N. G., Wang, S., Tao, L. I. U., Xiao, N., & Zhou, J. (2021) · Integrative Zoology · doi:10.1111/1749-4877.12624 · Cited by 49
Self-citationGenome sequence and comparative analysis of reindeer (Rangifer tarandus) in northern Eurasia
Weldenegodguad, M., Pokharel, K., Ming, Y., Honkatukia, M., Peippo, J., Reilas, T., Røed, K. H., & Kantanen, J. (2020) · Scientific Reports · doi:10.1038/s41598-020-65487-y · Cited by 54
Feleke, M., Bennett, S., Chen, J., Hu, X., Williams, D., & Xu, J. (2020) · Journal of Orthopaedic Translation · doi:10.1016/j.jot.2020.10.012 · Cited by 48
Multiple genome alignment in the telomere-to-telomere assembly era
Kille, B., Balaji, A., Sedlazeck, F. J., Nute, M., & Treangen, T. J. (2022) · Genome Biology · doi:10.1186/s13059-022-02735-6 · Cited by 47
Metabolic Enabling and Detoxification by Mammalian Gut Microbes
Dearing, M. D., & Weinstein, S. B. (2022) · Annual Review of Microbiology · doi:10.1146/annurev-micro-111121-085333 · Cited by 51
Phylogenetics and phylogeography of red deer mtDNA lineages during the last 50 000 years in Eurasia
Doan, K., Niedziałkowska, M., Stefaniak, K., Sykut, M. T., Jędrzejewska, B., Ratajczak‐Skrzatek, U., Piotrowska, N., Ridush, B., Zachos, F. E., Popović, D., et al. (2021) · Zoological Journal of the Linnean Society · doi:10.1093/zoolinnean/zlab025 · Cited by 47
Species-specific traits mediate avian demographic responses under past climate change
Germain, R. R., Feng, S., Chen, G., Graves, G. R., Tobias, J. A., Rahbek, C., Lei, F., Fjeldså, J., Hosner, P. A., Gilbert, M. T. P., et al. (2023) · Nature Ecology & Evolution · doi:10.1038/s41559-023-02055-3 · Cited by 49
Self-citationLarge-scale snake genome analyses provide insights into vertebrate development
Peng, C., Wu, D., Ren, J., Peng, Z., Ma, Z., Wu, W., Lv, Y., Wang, Z., Deng, C., Jiang, K., et al. (2023) · Cell · doi:10.1016/j.cell.2023.05.030 · Cited by 48
Self-citationNursyifa, C., Brüniche–Olsen, A., Garcia‐Erill, G., Heller, R., & Albrechtsen, A. (2021) · Molecular Ecology Resources · doi:10.1111/1755-0998.13491 · Cited by 47
Self-citationSexual selection promotes giraffoid head-neck evolution and ecological adaptation
Wang, S., Ye, J., Meng, J., Li, C., Costeur, L., Mennecart, B., Zhang, C., Zhang, J., Aiglstorfer, M., Wang, Y., et al. (2022) · Science · doi:10.1126/science.abl8316 · Cited by 41
Self-citationComparative genomics reveals the hybrid origin of a macaque group
Zhang, B.-L., Chen, W., Wang, Z., Pang, W. K., Luo, M., Wang, S., Shao, Y., He, W.-Q., Deng, Y., Zhou, L., et al. (2023) · Science Advances · doi:10.1126/sciadv.add3580 · Cited by 42
Self-citationYuan, Y., 西北工业大学生态环境学院, 陕. 西. 7., Sun, D., Qin, T., Mao, S., Zhu, W., Yin, Y., Huang, J., Heller, R., Li, Z., et al. (2022) · 动物学研究 · doi:10.24272/j.issn.2095-8137.2022.086 · Cited by 43
Self-citationEvolutionary causes and consequences of ungulate migration
Abraham, J. O., Upham, N. S., Damian‐Serrano, A., & Jesmer, B. R. (2022) · Nature Ecology & Evolution · doi:10.1038/s41559-022-01749-4 · Cited by 45
Modes of genetic adaptations underlying functional innovations in the rumen
Pan, X., Cai, Y., Li, Z., Chen, X., Heller, R., Wang, N., Wang, Y., Zhao, C., Wang, Y., Xu, H., et al. (2020) · Science China Life Sciences · doi:10.1007/s11427-020-1828-8 · Cited by 41
Self-citationWang, Y., Huang, J., Li, E., Xu, S., Zhan, Z., Zhang, X., Yang, Z., Guo, F., Liu, K., Liu, D., et al. (2022) · Frontiers in Plant Science · doi:10.3389/fpls.2022.813177 · Cited by 40
Self-citationAdaptations to a cold climate promoted social evolution in Asian colobine primates
Qi, X., Wu, J., Zhao, L., Wang, L., Guang, X., Garber, P. A., Opie, C., Yuan, Y., Diao, R., Li, G., et al. (2023) · Science · doi:10.1126/science.abl8621 · Cited by 42
Self-citationZhen, Y., Xi, Z., Abdu, S. M. N., He, F., Han, M., Yin, J., Ge, L., Chen, Y., Wang, Y., Wei, W., et al. (2023) · Microbiology Spectrum · doi:10.1128/spectrum.05343-22 · Cited by 39
Self-citationPérez‐Sánchez, J., Naya-Català, F., Soriano, B., Piazzon, M. C., Hafez, A. I., Gabaldón, T., Lloréns, C., Sitjà‐Bobadilla, A., & Calduch-Giner, J. À. (2019) · Frontiers in Marine Science · doi:10.3389/fmars.2019.00760 · Cited by 39
Wu, Y., Gao, N., Sun, C., Feng, T., Liu, Q., & Chen, W. (2024) · Microbiome · doi:10.1186/s40168-024-01784-2 · Cited by 40
Brüniche–Olsen, A., Kellner, K. F., & DeWoody, J. A. (2019) · Molecular Ecology · doi:10.1111/mec.15266 · Cited by 46
Springer, M. S., Molloy, E. K., Sloan, D. B., Simmons, M. P., & Gatesy, J. (2019) · Journal of Heredity · doi:10.1093/jhered/esz076 · Cited by 38
Ruminant inner ear shape records 35 million years of neutral evolution
Mennecart, B., Dziomber, L., Aiglstorfer, M., Bibi, F., DeMiguel, D., Fujita, M., Kubo, M. O., Laurens, F., Meng, J., Métais, G., et al. (2022) · Nature Communications · doi:10.1038/s41467-022-34656-0 · Cited by 39
Self-citationA multi-tissue single-cell expression atlas in cattle
Han, B., Li, H., Zheng, W., Zhang, Q., Chen, A., Zhu, S., Shi, T., Wang, F., Zou, D., Yu, S., et al. (2025) · Nature Genetics · doi:10.1038/s41588-025-02329-5 · Cited by 45
Self-citationVaz, F. F., Raso, T. D. F., Agius, J. E., Hunt, T., Leishman, A., Eden, J., & Phalen, D. N. (2020) · Virus Evolution · doi:10.1093/ve/veaa024 · Cited by 36
Deer antlers: the fastest growing tissue with least cancer occurrence
Li, C., Li, Y., Wang, W., Scimeca, M., Melino, G., Du, R., & Shi, Y. (2023) · Cell Death and Differentiation · doi:10.1038/s41418-023-01231-z · Cited by 35
Self-citationThe First High-Quality Reference Genome of Sika Deer Provides Insights into High-Tannin Adaptation
Xing, X., Ai, C., Wang, T., Li, Y., Liu, H., Hu, P., Wang, G., Liu, H., Wang, H., Zhang, R., et al. (2022) · Genomics Proteomics & Bioinformatics · doi:10.1016/j.gpb.2022.05.008 · Cited by 36
Self-citationLiu, X.-Q., Xia, X., Chen, L., & Wang, X. (2022) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2022.107606 · Cited by 36
Self-citationLan, L., Zhao, H., Xu, S., Kan, S., Zhang, X., Liu, W., Liao, X., Tembrock, L. R., Ren, Y., Reeve, W. G., et al. (2023) · Horticulture Research · doi:10.1093/hr/uhad124 · Cited by 35
Self-citationExploring Conflicts in Whole Genome Phylogenetics: A Case Study Within Manakins (Aves: Pipridae)
Zhao, M., Kurtis, S. M., White, N. D., Moncrieff, A. E., Leite, R. N., Brumfield, R. T., Braun, E. L., & Kimball, R. T. (2022) · Systematic Biology · doi:10.1093/sysbio/syac062 · Cited by 33
Humble, E., Dobrynin, P. V., Senn, H., Chuven, J., Scott, A. F., Mohr, D. W., Dudchenko, O., Omer, A. D., Colaric, Z., Aiden, E. L., et al. (2020) · Molecular Ecology Resources · doi:10.1111/1755-0998.13181 · Cited by 34
Comparative Genomics Sheds Light on the Convergent Evolution of Miniaturized Wasps
Xu, H.-X., Ye, X.-H., Yang, Y.-J., Yang, Y., Sun, Y. H., Mei, Y., Xiong, S.-J., He, K., Xu, L., Fang, Q., et al. (2021) · Molecular biology and evolution · doi:10.1093/molbev/msab273 · Cited by 28
Self-citationIijima, H., Nagata, J., Izuno, A., Uchiyama, K., Akashi, N., Fujiki, D., & Kuriyama, T. (2023) · The Holocene · doi:10.1177/09596836231157063 · Cited by 32
The Ruminant Telomere-to-Telomere (RT2T) Consortium
Kalbfleisch, T., McKay, S., Murdoch, B. M., Adelson, D. L., Almansa-Villa, D., Becker, G. M., Beckett, L. M., Benítez-Galeano, M. J., Biase, F. H., Casey, T., et al. (2024) · Nature Genetics · doi:10.1038/s41588-024-01835-2 · Cited by 35
Self-citationAdmixture in Mammals and How to Understand Its Functional Implications
Fontsere, C., de Manuel, M., Marquès‐Bonet, T., & Kuhlwilm, M. (2019) · BioEssays · doi:10.1002/bies.201900123 · Cited by 29
Li, Y., Zhang, T., Shi, M., Zhang, B., Hu, X., Xu, S., Ding, J., Liu, S., Hu, D., & Rubenstein, D. I. (2021) · Integrative Zoology · doi:10.1111/1749-4877.12522 · Cited by 32
Population dynamics of caribou shaped by glacial cycles before the last glacial maximum
Taylor, R. S., Manseau, M., Klütsch, C. F. C., Polfus, J. L., Steedman, A. E., Hervieux, D., Kelly, A., Larter, N. C., Gamberg, M., Schwantje, H. M., et al. (2021) · Molecular Ecology · doi:10.1111/mec.16166 · Cited by 38
Garcia‐Erill, G., Jørgensen, C. H. F., Muwanika, V. B., Wang, X., Rasmussen, M. S., de Jong, Y. A., Gaubert, P., Olayemi, A., Salmona, J., Butynski, T. M., et al. (2022) · Molecular Biology and Evolution · doi:10.1093/molbev/msac134 · Cited by 33
Self-citationGiraffe lineages are shaped by major ancient admixture events
Bertola, L. D., Quinn, L. J. E., Hanghøj, K., Garcia‐Erill, G., Rasmussen, M. S., Balboa, R. F., Meisner, J., Bøggild, T., Wang, X., Lin, L., et al. (2024) · Current Biology · doi:10.1016/j.cub.2024.02.051 · Cited by 32
Self-citationMoose genomes reveal past glacial demography and the origin of modern lineages
Dussex, N., Alberti, F., Heino, M. T., Olsen, R., van der Valk, T., Ryman, N., Laikre, L., Ahlgren, H., Askeyev, I., Askeyev, O., et al. (2020) · BMC Genomics · doi:10.1186/s12864-020-07208-3 · Cited by 28
Population Genomics of Wall Lizards Reflects the Dynamic History of the Mediterranean Basin
Yang, W., Feiner, N., Salvi, D., Laakkonen, H. M., Jablonski, D., Pinho, C., Carretero, M. Á., Sacchi, R., Zuffi, M. A. L., Scali, S., et al. (2021) · Molecular Biology and Evolution · doi:10.1093/molbev/msab311 · Cited by 33
Xu, S., Akhatayeva, Z., Liu, J., Feng, X., Yu, Y., Badaoui, B., Esmailizadeh, A., Kantanen, J., Amills, M., Lenstra, J. A., et al. (2024) · Science China Life Sciences · doi:10.1007/s11427-024-2744-4 · Cited by 32
Self-citationTang, B., Wang, Z., Liu, Q., Wang, Z., Ren, Y., Guo, H., Qi, T., Li, Y.-T., Zhang, H., Jiang, S., et al. (2020) · Molecular Ecology Resources · doi:10.1111/1755-0998.13266 · Cited by 31
Self-citationChebii, V. J., Oyola, S. O., Kotzé, A., Entfellner, J.-B. D., Mutuku, J. M., & Agaba, M. K. (2020) · Animals · doi:10.3390/ani10112181 · Cited by 29
Pan, C., Lei, Z., Wang, S., Wang, X., Wei, D., Cai, X., Luoreng, Z., Wang, L., & Ma, Y. (2021) · BMC Genomics · doi:10.1186/s12864-021-07653-8 · Cited by 28
de Jager, D., Glanzmann, B., Möller, M., Hoal, E. G., van Helden, P. D., Harper, C. K., & Bloomer, P. (2021) · Scientific Reports · doi:10.1038/s41598-021-83823-8 · Cited by 31
Chen, S., Liu, S., Shi, S., Jiang, Y., Cao, M., Tang, Y., Li, W., Liu, J., Fang, L., Yu, Y., et al. (2022) · BMC Biology · doi:10.1186/s12915-022-01459-0 · Cited by 33
Self-citationIncreasing Information Content and Diagnosability in Family-Level Classifications
Kuntner, M., Čandek, K., Gregorič, M., Turk, E., Hamilton, C. A., Chamberland, L., Starrett, J., Cheng, R., Coddington, J. A., Agnarsson, I., et al. (2023) · Systematic Biology · doi:10.1093/sysbio/syad021 · Cited by 25
Genetic adaptations of sea anemone to hydrothermal environment
Zhou, Y., Liu, H., Feng, C., Lu, Z., Liu, J., Huang, Y., Tang, H., Xu, Z., Pu, Y., & Zhang, H. (2023) · Science Advances · doi:10.1126/sciadv.adh0474 · Cited by 29
Telomere-to-telomere genome assembly of a male goat reveals variants associated with cashmere traits
Wu, H. C., Luo, L.-Y., Zhang, Y., Zhang, C.-Y., Huang, J.-H., Mo, D.-X., Zhao, L.-M., Wang, Z., Wang, Y., Hehua, E., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-54188-z · Cited by 32
Self-citationZhang, K., Zhang, Y., Qin, J., Zhu, H., Liu, N., Sun, D., Yin, Y., Mao, S., Zhu, W., Huang, Z., et al. (2023) · Journal of Advanced Research · doi:10.1016/j.jare.2023.12.016 · Cited by 27
Self-citationHamdi, F., Roushani, M., & Hoseini, S. J. (2024) · Microchemical Journal · doi:10.1016/j.microc.2024.112429 · Cited by 25
Farré, M., Li, Q., Darolti, I., Zhou, Y., Damas, J., Proskuryakova, A. A., Kulemzina, A. I., Chemnick, L. G., Kim, J., Ryder, O. A., et al. (2019) · GigaScience · doi:10.1093/gigascience/giz090 · Cited by 24
Self-citationGenomic insights into ruminant evolution: from past to future prospects
Wang, B., Chen, L., & Wang, W. (2019) · 动物学研究 · doi:10.24272/j.issn.2095-8137.2019.061 · Cited by 27
Self-citationPlio-Pleistocene African megaherbivore losses associated with community biomass restructuring
Bibi, F., & Cantalapiedra, J. L. (2023) · Science · doi:10.1126/science.add8366 · Cited by 25
Self-citationLiu, X., Li, Z., Yan, Y., Li, Y., Wu, H., Pei, J., Yan, P., Yang, R., Guo, X., & Lan, X. (2021) · Evolutionary Applications · doi:10.1111/eva.13168 · Cited by 23
Self-citationGalbraith, J. D., Ludington, A. J., Sanders, K. L., Suh, A., & Adelson, D. L. (2021) · Biology Letters · doi:10.1098/rsbl.2021.0342 · Cited by 25
An, Z. X., Shi, L., Hou, G., Zhou, H., & Xun, W. (2024) · animal · doi:10.1016/j.animal.2024.101147 · Cited by 31
Li, Z., Wang, X., Alberdi, A., Deng, J., Zhong, Z., Si, H., Zheng, C., Zhou, H., Wang, J., Yang, Y., et al. (2020) · Frontiers in Microbiology · doi:10.3389/fmicb.2020.01311 · Cited by 23
Self-citationAugmin-dependent microtubule self-organization drives kinetochore fiber maturation in mammals
Almeida, A. C., Soares-de-Oliveira, J., Drpic, D., Cheeseman, L. P., Damas, J., Lewin, H. A., Larkin, D. M., Aguiar, P., Pereira, A. J., & Maiato, H. (2022) · Cell Reports · doi:10.1016/j.celrep.2022.110610 · Cited by 23
Self-citation
Metadata
- Authors
- Chen, L., Qiu, Q., Jiang, Y., Wang, K., Lin, Z., Li, Z., Bibi, F., Yang, Y., Wang, J., Nie, W., Su, W., Liu, G., Li, Q., Fu, W., Pan, X., Liu, C., Yang, J., Zhang, C., Yin, Y., Wang, Y., Zhao, Y., Zhang, C., Wang, Z., Qin, Y., Liu, W., Wang, B., Ren, Y., Zhang, R., Zeng, Y., da Fonseca, R. R., Wei, B., Li, R., Wan, W., Zhao, R., Zhu, W., Wang, Y., Duan, S., Gao, Y., Zhang, Y. E., Chen, C., Hvilsom, C., Epps, C. W., Chemnick, L. G., Dong, Y., Mirarab, S., Siegismund, H. R., Ryder, O. A., Gilbert, M. T. P., Lewin, H. A., Zhang, G., Heller, R., & Wang, W.
- Affiliations
- Northwestern Polytechnical University (CN)
- Northwest A&F University (CN)
- Chinese Academy of Agricultural Sciences (CN)
- Museum für Naturkunde (DE)
- Lanzhou University (CN)
- Kunming Institute of Zoology (CN)
- China National GeneBank (CN)
- Kashi University (CN)
- State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China.
- Section for Computational and RNA Biology, Department of Biology, University of Copenhagen, DK-2100 Copenhagen, Denmark.
- Nowbio Biotechnology Company, Kunming 650201, China.
- Chinese Academy of Sciences (CN)
- Copenhagen Zoo (DK)
- Oregon State University (US)
- San Diego Zoo Institute for Conservation Research (US)
- Yunnan Agricultural University (CN)
- University of California San Diego (US)
- University of Copenhagen (DK)
- University of California, Davis (US)
- Corresponding author
- Chen, Lei
- Qiu, Qiang
- Jiang, Yu
- Wang, Kun
- Lin, Zeshan
- Li, Zhipeng
- Zhang, Guojie
- Heller, Rasmus
- Wang, Wen
- ORCID
- Chen, Lei
- Qiu, Qiang
- Jiang, Yu
- Wang, Kun
- Lin, Zeshan
- Li, Zhipeng
- Bibi, Faysal
- Yang, Yongzhi
- Liu, Guichun
- Li, Qiye
- Fu, Weiwei
- Pan, Xiangyu
- Liu, Chang
- Yang, Jie
- Zhang, Chenzhou
- Yin, Yuan
- Wang, Yu
- Zhao, Yue
- Zhang, Chen
- Wang, Zhongkai
- Qin, Yanli
- Liu, Wei
- Wang, Bao
- Ren, Yandong
- Zhang, Ru
- Zeng, Yan
- da Fonseca, Rute R.
- Wei, Bin
- Li, Ran
- Wan, Wenting
- Zhao, Ruoping
- Zhu, Wenbo
- Wang, Yutao
- Duan, Shengchang
- Gao, Yun
- Zhang, Yong E.
- Chen, Chunyan
- Hvilsom, Christina
- Epps, Clinton W.
- Dong, Yang
- Mirarab, Siavash
- Siegismund, Hans Redlef
- Ryder, Oliver A.
- Gilbert, M. Thomas P.
- Lewin, Harris A.
- Zhang, Guojie
- Heller, Rasmus
- Wang, Wen
- Venue
- Science
- Published
- 2019-06-21
- Volume
- 364
- Issue
- 6446
- ISSN
- 0036-8075 (ISSN-L)
- 1095-9203
- OpenAlex
- W2953226067
- Cited by
- 441
- References
- 193
- Citations by year
- 2026: 34 · 2025: 64 · 2024: 87 · 2023: 55 · 2022: 82 · 2021: 61 · 2020: 41 · 2019: 15
- FWCI
- 17.36
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Science (publishedVersion)
- PubMed (publishedVersion)
- Lanzhou University Institutional Repository (submittedVersion)
- Research at the University of Copenhagen (University of Copenhagen) (submittedVersion)
- Funders
- National Natural Science Foundation of China (31501984, 31822052)
- Fundamental Research Funds for the Central Universities (3102019JC007)
- National Program for Support of Top-notch Young Professionals
- Lundbeck Fellowship (R190-2014-2827)
- Carlsberg Foundation (CF16-0663)
- 1000 Talent Project of Shaanxi Province
- Strategic Priority Research Program of CAS (XDB13000000)
- Talents Team Construction Fund of Northwestern Polytechnical University
- Villum Foundation Young Investigator (VKR023447)
- Central Public-interest Scientific Institution Basal Research Fund (Y2019GH13)
- Villum Investigator Grant
- Danish National Research Foundation for its support of the Center for Macroecology, Evolution, and Climate (DNRF96)
- Natural science foundation from Jilin province (20170101158JC)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Physical Sciences › Earth and Planetary Sciences › Paleontology › Evolution and Paleontology Studies
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic and phenotypic traits in livestock
- Keywords
- ruminants, ruminant evolution, incomplete lineage sorting, population bottleneck, human migration out of Africa, horn evolution, cancer genes, deer, reindeer, Arctic adaptation, genomic selection
- MeSH terms
- Animals, Phylogeny, Ruminants, Genome, Sequence Analysis, DNA, Evolution, Molecular
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
