The DOI matches its Crossref record; 527 of the 527 references it cites were found in a registry or an index.
Mobile Genetic Elements Associated with Antimicrobial Resistance
Open accessAbstract
Strains of bacteria resistant to antibiotics, particularly those that are multiresistant, are an increasing major health care problem around the world. It is now abundantly clear that both Gram-negative and Gram-positive bacteria are able to meet the evolutionary challenge of combating antimicrobial chemotherapy, often by acquiring preexisting resistance determinants from the bacterial gene pool.
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In the citing paper
“Some determinants reflect intrinsic or species-associated background resistance, whereas others are acquired, horizontally transferable and clinically relevant.”
From Integrated Phenotypic and Sequencing-Based Resistome Assessment of Antimicrobial Resistance Determinants in a Sample of Commercial Farm-Animal Probiotic Products (2026) · cites this paper as [11]
Experimental — accuracy not yet measuredThe source backs part of the claim, not all of it — or backs it for a different population, condition or comparison.
In the citing paper
“the mere presence of an AMR-associated database hit does not necessarily imply public-health risk.”
From Integrated Phenotypic and Sequencing-Based Resistome Assessment of Antimicrobial Resistance Determinants in a Sample of Commercial Farm-Animal Probiotic Products (2026) · cites this paper as [11]
Experimental — accuracy not yet measuredThe source backs part of the claim, not all of it — or backs it for a different population, condition or comparison.
In the citing paper
“Intrinsic determinants in Enterococcus faecium, for example, must be interpreted differently from mobile glycopeptide, oxazolidinone, colistin, extended-spectrum β-lactamase (ESBL) or carbapenemase genes [11,12,13,14].”
From Integrated Phenotypic and Sequencing-Based Resistome Assessment of Antimicrobial Resistance Determinants in a Sample of Commercial Farm-Animal Probiotic Products (2026) · cites this paper as [11]
Experimental — accuracy not yet measuredThe cited source says what the claim attributes to it.
In the citing paper
“This framework is consistent with the broader horizontal gene transfer (HGT) literature, which emphasizes that mobility, ecological opportunity and recipient compatibility determine whether an ARG becomes a clinically relevant hazard [11,12,16,17].”
The check wasn’t confident either way, so it gives no verdict — never disputed.
In the citing paper
“The ESKAPEE species E. hormaechei 107 was detected in 77 food samples with rel. ab. = 0.02% (Figure 6C)”
From Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome. (2024) · cites this paper as [107]
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Citations
Cites
1 retracted
Shin, J., & Ko, K. S. (2015) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.00265-15 · Cited by 23
RetractedLiu, Y.-Y., Wang, Y., Walsh, T., Yi, L.-X., Zhang, R., Spencer, J., Doi, Y., Tian, G.-B., Dong, B.-L., Huang, X.-H., et al. (2016) · Lancet. Infectious Diseases (Print) · doi:10.1016/s1473-3099(15)00424-7 · Cited by 4,920
Carattoli, A., Zankari, E., García-Fernández, A., Voldby Larsen, M., Lund, O., Villa, L., Møller Aarestrup, F., & Hasman, H. (2014) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.02412-14 · Cited by 4,877
Bandage: interactive visualization of de novo genome assemblies
Wick, R. R., Schultz, M. B., Zobel, J., & Holt, K. E. (2015) · Bioinformatics · doi:10.1093/bioinformatics/btv383 · Cited by 3,043
ISfinder: the reference centre for bacterial insertion sequences
Siguier, P. (2006) · Nucleic Acids Research · doi:10.1093/nar/gkj014 · Cited by 2,767
CDD/SPARCLE: functional classification of proteins via subfamily domain architectures
Marchler‐Bauer, A., Yu, B., Han, L., He, J., Lanczycki, C. J., Lu, S., Chitsaz, F., Derbyshire, M. K., Geer, R. C., Gonzales, N. R., et al. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkw1129 · Cited by 2,720
Waves of resistance: Staphylococcus aureus in the antibiotic era
Chambers, H. F., & DeLeo, F. R. (2009) · Nature Reviews Microbiology · doi:10.1038/nrmicro2200 · Cited by 2,718
Identification of plasmids by PCR-based replicon typing
Carattoli, A., Bertini, A., Villa, L., et al. (2005) · Journal of Microbiological Methods · doi:10.1016/j.mimet.2005.03.018 · Cited by 2,355
Federal Funding for the Study of Antimicrobial Resistance in Nosocomial Pathogens: No ESKAPE
Rice, L. B. (2008) · The Journal of Infectious Diseases · doi:10.1086/533452 · Cited by 2,328
Mechanisms of, and Barriers to, Horizontal Gene Transfer between Bacteria
Thomas, C. M., & Nielsen, K. M. (2005) · Nature Reviews Microbiology · doi:10.1038/nrmicro1234 · Cited by 2,194
Research works printed but not linked: 1
- 10.1093/jac/dky1020 · DOI
Cited by
Sorted by citations
Antibiotic resistance in the environment
Larsson, D. G. J., & Flach, C.-F. (2022) · Nature Reviews Microbiology · doi:10.1038/s41579-021-00649-x · Cited by 3,164
The Ecology and Evolution of Pangenomes
Brockhurst, M. A., Harrison, E., Hall, J. P. J., Richards, T., McNally, A., & MacLean, C. (2019) · Current Biology · doi:10.1016/j.cub.2019.08.012 · Cited by 385
Zaheer, R., Cook, S. R., Barbieri, R., Goji, N., Cameron, A., Petkau, A., Polo, R. O., Tymensen, L., Stamm, C., Song, J., et al. (2020) · Scientific Reports · doi:10.1038/s41598-020-61002-5 · Cited by 262
Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome.
Carlino, N., Blanco-Míguez, A., Punčochář, M., Mengoni, C., Pinto, F., Tatti, A., Manghi, P., Armanini, F., Avagliano, M., Barcenilla, C., et al. (2024) · Cell · doi:10.1016/j.cell.2024.07.039 · Cited by 146
“The ESKAPEE species E. hormaechei 107 was detected in 77 food samples with rel. ab.”
Hypervirulent Klebsiella pneumoniae
Chen, J., Zhang, H., & Liao, X. (2023) · Infection and Drug Resistance · doi:10.2147/idr.s418523 · Cited by 65
Yasir, M., Al-Zahrani, I. A., Bibi, F., Abd El Ghany, M., & Azhar, E. I. (2022) · Food Research International · doi:10.1016/j.foodres.2022.111190 · Cited by 60
Mthembu, T. P., Zishiri, O. T., & El Zowalaty, M. E. (2019) · Pathogens · doi:10.3390/pathogens8030124 · Cited by 56
Bargheet, A., Klingenberg, C., Esaiassen, E., Hjerde, E., Cavanagh, J. P., Bengtsson-Palme, J., & Pettersen, V. K. (2023) · eBioMedicine · doi:10.1016/j.ebiom.2023.104613 · Cited by 52
Cao, Z., Cui, L., Liu, Q., Liu, F., Zhao, Y., Guo, K., Hu, T., Zhang, F., Sheng, X., Wang, X., et al. (2022) · Microbiology Spectrum · doi:10.1128/spectrum.02518-21 · Cited by 20
Sliti, A., Kim, R.-H., Lee, D., & Shin, J.-H. (2025) · Microbial Pathogenesis · doi:10.1016/j.micpath.2025.107405 · Cited by 5
Kerek, Á., Husz, L. H., Szarka, E., Tornyos, G. Á., & Jerzsele, Á. (2026) · Antibiotics · doi:10.3390/antibiotics15060544
“Intrinsic determinants in Enterococcus faecium , for example, must be interpreted differently from mobile glycopeptide, oxazolidinone, colistin, extended-spectrum β -lactamase (ESBL) or carbapenemase genes [11–14].”
Metadata
- Authors
- Partridge, S. R., Kwong, S. M., Firth, N., & Jensen, S. O.
- Affiliations
- The University of Sydney (AU)
- Ingham Institute (AU)
- Venue
- Clinical Microbiology Reviews
- Publisher
- American Society for Microbiology
- Published
- 2018-10
- Volume
- 31
- Issue
- 4
- ISSN
- 0893-8512 (ISSN-L)
- 1098-6618
- PMC
- PMC6148190
- OpenAlex
- W2885680427
- Cited by
- 2,751
- References
- 527
- Citations by year
- 2026: 579 · 2025: 452 · 2024: 367 · 2023: 374 · 2022: 352 · 2021: 296 · 2020: 197 · 2019: 116 · 2018: 15
- FWCI
- 13.01
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Clinical Microbiology Reviews (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Health Sciences › Medicine › Microbiology (medical) › Antibiotic Resistance in Bacteria
- Health Sciences › Medicine › Infectious Diseases › Antimicrobial Resistance in Staphylococcus
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Keywords
- mobile genetic elements, antimicrobial resistance, antibiotic resistance, multidrug resistance, horizontal gene transfer, resistance determinants, Gram-negative bacteria, Gram-positive bacteria, bacterial evolution
- MeSH terms
- Anti-Bacterial Agents, Bacteria, Bacterial Infections, DNA Transposable Elements, Biological Evolution, Gene Transfer, Horizontal, Drug Resistance, Bacterial
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