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Receptor Recognition by the Novel Coronavirus from Wuhan: an Analysis Based on Decade-Long Structural Studies of SARS Coronavirus
Open accessAbstract
The recent emergence of Wuhan coronavirus (2019-nCoV) puts the world on alert. 2019-nCoV is reminiscent of the SARS-CoV outbreak in 2002 to 2003. Our decade-long structural studies on the receptor recognition by SARS-CoV have identified key interactions between SARS-CoV spike protein and its host receptor angiotensin-converting enzyme 2 (ACE2), which regulate both the cross-species and human-to-human transmissions of SARS-CoV. One of the goals of SARS-CoV research was to build an atomic-level iterative framework of virus-receptor interactions to facilitate epidemic surveillance, predict species-specific receptor usage, and identify potential animal hosts and animal models of viruses. Based on the sequence of 2019-nCoV spike protein, we apply this predictive framework to provide novel insights into the receptor usage and likely host range of 2019-nCoV. This study provides a robust test of this reiterative framework, providing the basic, translational, and public health research communities with predictive insights that may help study and battle this novel 2019-nCoV.
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“RBD contains a core structure and a variable receptor-binding motif (RBM; 437–508 a.a.) which interacts and attaches with the host cell ACE-2 receptor (Fig. 2) [7].”
From Waves and variants of SARS-CoV-2: understanding the causes and effect of the COVID-19 catastrophe (2022) · cites this paper as [7]
Experimental — accuracy not yet measuredThe source backs part of the claim, not all of it — or backs it for a different population, condition or comparison.
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“RBD contains a core structure and a variable receptor-binding motif (RBM; 437–508 a.a.) which interacts and attaches with the host cell ACE-2 receptor (Fig. 2) [7].”
From Waves and variants of SARS-CoV-2: understanding the causes and effect of the COVID-19 catastrophe (2022) · cites this paper as [7]
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A Comprehensive Review of Tocilizumab in COVID‐19 Acute Respiratory Distress Syndrome
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Antiviral performance of graphene-based materials with emphasis on COVID-19: A review
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InfluentialImmunological Aspects of SARS-CoV-2 Infection and the Putative Beneficial Role of Vitamin-D
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“To this end, it is mandatory to work prospectively to produce or identify better antiviral drugs and prophylactic/therapeutic MoAb therapies, as well as possibly targeting vital pathogenic factors, such as, in the case of SARS-CoV-2, Spike protein RBD [36, 98] or the main protease Mpro [99].”
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“The presentation of diarrhea may be related to the pathogenesis of SARS-CoV-2, because this virus binds to human receptor angiotensin-converting enzyme 2 (45), which shows high expression in the gastrointestinal tract (22,46).”
Does Early Childhood Vaccination Protect Against COVID-19?
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“was performed at the active pocket of the RBD of the SARS-CoV-2 spike protein (PDB ID: 6LZG), in light of prior knowledge about the active site residues that bind with human receptor ACE2 (Andersen et al., 2020; Hasan et al., 2020; Tai et al., 2020; Wan et al., 2020).”
BackgroundInfluentialThe Impact of SARS-Cov-2 Virus Infection on the Endocrine System
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“SARS-CoV, MERS-CoV and SARS-CoV-2 bind to different host receptors to gain entry into host cells [4,51,52].”
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“The RBDs of SARS-CoV-2 and a closely related SARS-CoV-1 both recognize human angiotensin-converting enzyme 2 (ACE2) as their receptor (Li, 2015; Wan et al., 2020; Li et al., 2003; Zhou et al., 2020).”
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Is there an impact of the COVID-19 pandemic on male fertility? The ACE2 connection
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“…is primarily determined by the affinity between the viral RBD domain of spike protein and the host receptor ACE2, and there are some specific amino acid residues that are potentially involved in the interaction and viral binding (Huentelman et al., 2004; Wan et al., 2020; Zhang et al., 2005).”
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“The most important receptors for SARS-Cov-2 are ACE2 [31] TMPRSS2 [32], and GRP78 [6], which by blocking these receptors can protect the body against the virus.”
Manipulation of ACE2 expression in COVID-19
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“Some analysis suggested that SARS-CoV-2 recognizes human ACE2 more efficiently than SARS-CoV, increasing the capacity of SARS-CoV-2 to transmit from human to human (Wan et al., 2020).”
BackgroundDoes Ibuprofen Worsen COVID-19?
Moore, N., Carleton, B., Blin, P., Bosco-Levy, P., & Droz, C. (2020) · Drug Safety · doi:10.1007/s40264-020-00953-0 · Cited by 78
“A suggestion that ibuprofen might upregulate ACE-2, thereby increasing the entrance of COVID-19 into the cells [4, 14].”
BackgroundTargeting SARS-CoV2 Spike Protein Receptor Binding Domain by Therapeutic Antibodies
Hussain, A., Hasan, A., Babadaei, M. M. N., Bloukh, S. H., Chowdhury, M. E. H., Sharifi, M., Haghighat, S., & Falahati, M. (2020) · Biomedicine & Pharmacotherapy · doi:10.1016/j.biopha.2020.110559 · Cited by 78
“While this data revealed that SARS-CoV2 may interact with human ACE2 with a high binding affinity, theoretical investigations demonstrated that the formation of this complex is not favorable and the RBD sequence is not similar with that in SARS-CoV to be potential for interaction with receptor [30, 33].”
Laurini, E., Marson, D., Aulić, S., Fermeglia, M., & Pricl, S. (2020) · ACS Nano · doi:10.1021/acsnano.0c04674 · Cited by 77
A fractional-order differential equation model of COVID-19 infection of epithelial cells
Chatterjee, A. N., & Ahmad, B. (2021) · Chaos Solitons & Fractals · doi:10.1016/j.chaos.2021.110952 · Cited by 78
Rotondo, J. C., Martini, F., Maritati, M., Mazziotta, C., Mauro, G. D., Lanzillotti, C., Barp, N., Gallerani, A., Tognon, M. G., & Contini, C. (2021) · Viruses · doi:10.3390/v13091687 · Cited by 81
Do children need a longer time to shed SARS-CoV-2 in stool than adults?
Ma, X., Su, L., Zhang, Y., Zhang, X., Gai, Z., & Zhang, Z. (2020) · Journal of Microbiology Immunology and Infection · doi:10.1016/j.jmii.2020.03.010 · Cited by 76
Blockade of SARS-CoV-2 infection by recombinant soluble ACE2
Alhenc‐Gelas, F., & Drüeke, T. B. (2020) · Kidney International · doi:10.1016/j.kint.2020.04.009 · Cited by 77
“SARS-CoV-2, the coronavirus responsible for the current COVID-19 pandemic, is believed to bind mainly or exclusively to angiotensin-converting enzyme 2 (ACE2), a cell-surface protein otherwise known for its enzymatic, carboxypeptidase-type activity and its physiological role in the reninangiotensin system.(1,2) ACE2 a…”
BackgroundPotential new treatment strategies for COVID-19: is there a role for bromhexine as add-on therapy?
Depfenhart, M., de Villiers, D., Lemperle, G. H., Meyer, M., & Somma, S. D. (2020) · Internal and Emergency Medicine · doi:10.1007/s11739-020-02383-3 · Cited by 83
Role of the early secretory pathway in SARS-CoV-2 infection
Sicari, D., Chatziioannou, A. A., Koutsandreas, T., Sitia, R., & Chevet, É. (2020) · The Journal of Cell Biology · doi:10.1083/jcb.202006005 · Cited by 76
Hrenak, J., & Šimko, F. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21218038 · Cited by 79
“A mutation in the receptor-binding domain of the SARS-CoV-2 spike protein S compared to SARS-CoV is responsible for a higher affinity of SARS-CoV-2 to ACE2 [67].”
BackgroundRenin-Angiotensin-Aldosterone System Inhibitors in Patients with Covid-19
Feldman, A., Arruda, G., & de Souza, O. F. (2020) · Journal of Cardiac Arrhythmias · doi:10.24207/jca.v33i3.3405 · Cited by 82
Implications of SARS‐CoV‐2 infection for neurogastroenterology
Marasco, G., Lenti, M. V., Cremon, C., Barbaro, M. R., Stanghellini, V., Sabatino, A. D., & Barbara, G. (2021) · Neurogastroenterology & Motility · doi:10.1111/nmo.14104 · Cited by 78
Gowda, P., Patrick, S., Joshi, S. D., Kumawat, R. K., & Sen, E. (2021) · Cytokine · doi:10.1016/j.cyto.2021.155496 · Cited by 79
“This was followed by infection of the cells with SARS-CoV-2 [42] at an MOI (multiplicity of infection) of 0.”
Lin, W., Fan, J., Hu, L., Zhang, Y., Ooi, J. D., Meng, T., Jin, P., Ding, X., Peng, L., Song, L., et al. (2021) · Chinese Medical Journal · doi:10.1097/cm9.0000000000001439 · Cited by 77
“2019-nCoV had a receptor-binding domain similar to that of SARS-CoV, directly binding to angiotensin-converting enzyme II (ACE2), strongly suggesting that 2019-nCoV uses ACE2 as its receptor.([5-8])”
BackgroundNovel virus-like nanoparticle vaccine effectively protects animal model from SARS-CoV-2 infection
Geng, Q., Tai, W., Baxter, V. K., Shi, J., Wan, Y., Zhang, X., Montgomery, S. A., Taft-Benz, S., Anderson, E. J., Knight, A. C., et al. (2021) · PLoS Pathogens · doi:10.1371/journal.ppat.1009897 · Cited by 78
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“ACE2 SARS-CoV-2 receptors generated on MSCderived EVs decrease the viral infection by competitively inhibiting SARS-CoV-2 binding to alveolar cells, mainly AT2 cells [112] (Fig.”
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Predicting novel drugs for SARS-CoV-2 using machine learning from a >10 million chemical space
Kowalewski, J., & Ray, A. (2020) · Heliyon · doi:10.1016/j.heliyon.2020.e04639 · Cited by 76
Vivarelli, S., Falzone, L., Grillo, C. M., Scandurra, G., Torino, F., & Libra, M. (2020) · Cancers · doi:10.3390/cancers12082237 · Cited by 75
“The host’s infection is initiated by the SARS-CoV-2 spike (S) protein binding to the extracellular enzymatic domain of the transmembrane angiotensin-converting enzyme 2 (ACE2) cellular receptor, expressed by the epithelial and endothelial cells within the alveoli [8].”
BackgroundMa, N., Li, P., Wang, X., Yu, Y., Tan, X., Chen, P., Li, S., & Jiang, F. (2020) · JAMA Ophthalmology · doi:10.1001/jamaophthalmol.2020.3690 · Cited by 76
Cardiovascular Complications Associated with COVID-19 and Potential Therapeutic Strategies
Samidurai, A., & Das, A. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21186790 · Cited by 82
“In addition, a single mutation at N501T in the spike protein strengthened the binding efficiency of SARS-CoV-2 to Angiotensin-Converting Enzyme 2 (ACE2), the primary mode of entry into host cell [17].”
BackgroundBhowmik, D., Nandi, R., Prakash, A., & Kumar, D. (2021) · Heliyon · doi:10.1016/j.heliyon.2021.e06515 · Cited by 79
“Previous studies on protein-protein docking, molecular dynamics, and virtual screening studies on SARS-CoV-2 spike glycoprotein (nCoVSP) as well human ACE-2 receptor already evaluated the binding pockets and essential residues in the RBD and their interaction with the hotspots in ACE-2 receptor (Wu et al., 2011; Shang…”
COVID‐19‐induced endotheliitis: emerging evidence and possible therapeutic strategies
Calabretta, E., Moraleda, J. M., Iacobelli, M., Jara, R., Vlodavsky, I., O’Gorman, P., Pagliuca, A., Mo, C. C., Baron, R. M., Aghemo, A., et al. (2021) · British Journal of Haematology · doi:10.1111/bjh.17240 · Cited by 75
Recent advances in developing small-molecule inhibitors against SARS-CoV-2
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“Like SARS-CoV, SARS-CoV-2 uses a glycosylated, homotrimeric class I fusion S protein to gain entry into host cells 31 e 33 .”
Gęca, T., Wojtowicz, K., Guzik, P. W., & Góra, T. (2022) · International Journal of Environmental Research and Public Health · doi:10.3390/ijerph19116555 · Cited by 80
“intestines (enterocytes) [39], kidneys (proximal tubule cells) [34,35,40], as well as the heart muscle (myocardium cells) [36,37,41].”
BackgroundElevations of serum cancer biomarkers correlate with severity of COVID‐19
Wei, X., Su, J., Yang, K., Wei, J., Wan, H., Cao, X., Tan, W., & Wang, H. (2020) · Journal of Medical Virology · doi:10.1002/jmv.25957 · Cited by 75
Targeting Cytokine Storm to Manage Patients with COVID-19: A Mini-Review
Roshanravan, N., Seif, F., Ostadrahimi, A., Pouraghaei, M., & Ghaffari, S. (2020) · Archives of Medical Research · doi:10.1016/j.arcmed.2020.06.012 · Cited by 77
Wang, K., Zhang, X., Sun, J., Ye, J., Wang, F., Hua, J., Zhang, H., Shi, T., Li, Q., & Wu, X. (2020) · CHEST Journal · doi:10.1016/j.chest.2020.06.015 · Cited by 75
“Sputum has been reported to be more sensitive than NPS in SARS-CoV-2 RNA detection because SARSCoV-2 mainly bind with angiotensin-converting enzyme 2 receptor of the lower respiratory tract.(13-15) However, the use of sputum specimen in clinical practice is quite limited because only a proportion of patients with COVI…”
Gupta, S. K., Singh, V. K., Varadwaj, P. K., Chakravartty, N., Katta, A. V. S. K. M., Lekkala, S. P., Thomas, G., Narasimhan, S., Reddy, A. R., & Lachagari, V. B. R. (2020) · Journal of Biomolecular Structure and Dynamics · doi:10.1080/07391102.2020.1837679 · Cited by 75
“The receptor binding domain (RBD) region of S glycoprotein is recognized by the critical lysine 31 residue of the hACE2 receptor protein (Wan et al., 2020).”
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“After its entry into the respiratory system, the spike glycoprotein ectodomain present on the viral capsid binds to the angiotensin-converting enzyme-2 (ACE2) transmembrane receptor protein, consequently, the RNA genome enters the alveolar cells by receptor-mediated endocytosis [8].”
BackgroundCOVID-19 and Hypertension: The What, the Why, and the How
Muhamad, S.-A., Ugusman, A., Kumar, J., Skiba, D. S., Hamid, A. A., & Aminuddin, A. (2021) · Frontiers in Physiology · doi:10.3389/fphys.2021.665064 · Cited by 76
FocusCovid: automated COVID-19 detection using deep learning with chest X-ray images
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“There is a similarity between the spike proteins of SARS-CoV and SARS coronavirus 2 (SARS-CoV-2), for this reason, it is assumed that SARS-CoV-2 also uses ACE2 as its receptor (Wan et al. 2020).”
BackgroundDiscovery of potential small molecular SARS-CoV-2 entry blockers targeting the spike protein
Wang, L., Wu, Y. L., Yao, S., Ge, H., Zhu, Y., Chen, K., Chen, W., Zhang, Y., Zhu, W. J., Wang, H., et al. (2021) · Acta Pharmacologica Sinica · doi:10.1038/s41401-021-00735-z · Cited by 77
“SARS-CoV-2 and SARS-CoV are beta coronaviruses, which are enveloped, single, and positive-stranded RNA viruses [3].”
BackgroundPotential immuno-nanomedicine strategies to fight COVID-19 like pulmonary infections
Bonam, S. R., Kotla, N. G., Bohara, R. A., Rochev, Y. A., Webster, T. J., & Bayry, J. (2020) · Nano Today · doi:10.1016/j.nantod.2020.101051 · Cited by 76
“Like other SARS-CoV, SARS-CoV-2 also uses the angiotensin 1converting enzyme 2 (ACE2; a close homolog of ACE) for entry into the cells [10,11], in addition to ACE2, it also uses other cellular proteases including transmembrane protease serine 2 (TMPRSS2) [12,13], which is useful in priming of the process of SARS-CoV-2.”
BackgroundThe Promise of AI in Detection, Diagnosis, and Epidemiology for Combating COVID-19: Beyond the Hype
Abdulkareem, M., & Petersen, S. E. (2021) · Frontiers in Artificial Intelligence · doi:10.3389/frai.2021.652669 · Cited by 83
The Renin-Angiotensin System: A Key Role in SARS-CoV-2-Induced COVID-19
El-Arif, G., Farhat, A., Khazaal, S., Annweiler, C., Kovacic, H., Wu, Y., Cao, Z., Fajloun, Z., Khattar, Z. A., & Sabatier, J. (2021) · Molecules · doi:10.3390/molecules26226945 · Cited by 76
“During viral infection, SARS-CoV-2 over-activates the RAS by binding to the ACE2 receptor, which normally has the function of degrading Ang II [21].”
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“Furthermore, the early identification of the genome sequence of SARS-CoV-2 virus by researchers facilitated the rapid development of diagnostic tests and the initiation of vaccine development efforts [109-111].”
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Vaccine development and therapeutic design for 2019‐nCoV/SARS‐CoV‐2: Challenges and chances
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“There is also some evidence that coronaviruses make use of certain antibodies for entry to the cell as an alternative mechanism of target cell binding (Wan et al., 2020).”
BackgroundXu, C. L. H., Raval, M., Schnall, J., Kwong, J. C., & Holmes, N. E. (2020) · The Pediatric Infectious Disease Journal · doi:10.1097/inf.0000000000002814 · Cited by 73
“Furthermore, ACE2 protein, a proven cell receptor for SARS-CoV-2, is abundantly expressed in the gastrointestinal tract.(8,9) Endoscopic sampling of patients with SARS-CoV-2 has recently demonstrated an intracellular staining of viral nucleocapsid protein in the gastric, duodenal and rectal epithelia.”
Background
Metadata
- Authors
- Wan, Y., Shang, J., Graham, R., Baric, R. S., & Li, F.
- Affiliations
- University of Minnesota (US)
- University of North Carolina at Chapel Hill (US)
- Corresponding author
- Li, Fang
- Venue
- Journal of Virology
- Publisher
- American Society for Microbiology
- Published
- 2020-03-17
- Volume
- 94
- Issue
- 7
- ISSN
- 0022-538X (ISSN-L)
- 1098-5514
- PMC
- PMC7081895
- OpenAlex
- W3004348779
- Cited by
- 4,341
- References
- 38
- Citations by year
- 2026: 27 · 2025: 75 · 2024: 170 · 2023: 299 · 2022: 619 · 2021: 1273 · 2020: 1865
- FWCI
- 133.25
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Journal of Virology (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- HHS | NIH | National Institute of Allergy and Infectious Diseases (R01AI089728, R01AI110700)
- Topics
- Health Sciences › Medicine › Infectious Diseases › SARS-CoV-2 and COVID-19 Research
- Life Sciences › Agricultural and Biological Sciences › Animal Science and Zoology › Animal Virus Infections Studies
- Health Sciences › Medicine › Infectious Diseases › Viral Infections and Outbreaks Research
- Keywords
- SARS-CoV-2, SARS-CoV, spike protein, angiotensin-converting enzyme 2, receptor recognition, host range prediction, interspecies transmission, human-to-human transmission, animal models, disease surveillance
- MeSH terms
- Protein Domains, Betacoronavirus, Angiotensin-Converting Enzyme 2, COVID-19, SARS-CoV-2, Amino Acid Sequence, Animals, China, Chiroptera, Humans, Peptidyl-Dipeptidase A, Models, Molecular, Phylogeny, Pneumonia, Viral, Receptors, Virus, Sequence Alignment, Coronavirus Infections, Severe acute respiratory syndrome-related coronavirus, Host Specificity, Spike Glycoprotein, Coronavirus
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