The DOI matches its Crossref record; 39 of the 39 references it cites were found in a registry or an index.
Control of Mitochondrial Transcription Specificity Factors (TFB1M and TFB2M) by Nuclear Respiratory Factors (NRF-1 and NRF-2) and PGC-1 Family Coactivators
Open accessAbstract
In vertebrates, mitochondrial DNA (mtDNA) transcription is initiated bidirectionally from closely spaced promoters, HSP and LSP, within the D-loop regulatory region. Early studies demonstrated that mtDNA transcription requires mitochondrial RNA polymerase and Tfam, a DNA binding stimulatory factor that is required for mtDNA maintenance. Recently, mitochondrial transcription specificity factors (TFB1M and TFB2M), which markedly enhance mtDNA transcription in the presence of Tfam and mitochondrial RNA polymerase, have been identified in mammalian cells. Here, we establish that the expression of human TFB1M and TFB2M promoters is governed by nuclear respiratory factors (NRF-1 and NRF-2), key transcription factors implicated in mitochondrial biogenesis. In addition, we show that NRF recognition sites within both TFB promoters are required for maximal trans activation by the PGC-1 family coactivators, PGC-1alpha and PRC. The physiological induction of these coactivators has been associated with the integration of NRFs and other transcription factors in a program of mitochondrial biogenesis. Finally, we demonstrate that the TFB genes are up-regulated along with Tfam and either PGC-1alpha or PRC in cellular systems where mitochondrial biogenesis is induced. Moreover, ectopic expression of PGC-1alpha is sufficient to induce the coordinate expression of all three nucleus-encoded mitochondrial transcription factors along with nuclear and mitochondrial respiratory subunits. These results support the conclusion that the coordinate regulation of nucleus-encoded mitochondrial transcription factors by NRFs and PGC-1 family coactivators is essential to the control of mitochondrial biogenesis.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“Key in orchestrating this process is the nuclear-encoded mitochondrial transcription factor A (TFAM), which is pivotal in regulating mtDNA transcription by directly interacting with mitochondrial genome along with mitochondrial transcription specificity factors TFB1M and TFB2M (Figure 3; Gleyzer et al., 2005; Ljubicic et al., 2010).”
From Mitochondrial (Dys)function and Insulin Resistance: From Pathophysiological Molecular Mechanisms to the Impact of Diet (2019) · cites this paper as Gleyzer et al., 2005
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
PCR protocols — A guide to methods and applications
U.G. (1990) · Trends in Biochemical Sciences · doi:10.1016/0968-0004(90)90252-7 · Cited by 11,751
Wu, Z., Puigserver, P., Andersson, U., Zhang, C., Adelmant, G., Mootha, V., Troy, A., Cinti, S., Lowell, B., Scarpulla, R. C., et al. (1999) · Cell · doi:10.1016/s0092-8674(00)80611-x · Cited by 4,139
Andrews, N. C., & Faller, D. V. (1991) · Nucleic Acids Research · doi:10.1093/nar/19.9.2499 · Cited by 2,337
Puigserver, P., & Spiegelman, B. M. (2003) · Endocrine Reviews · doi:10.1210/er.2002-0012 · Cited by 2,076
Mitochondrial transcription factor A is necessary for mtDNA maintance and embryogenesis in mice
Larsson, N.-G., Wang, J., Wilhelmsson, H., Oldfors, A., Rustin, P., Lewandoski, M., Barsh, G. S., & Clayton, D. A. (1998) · Nature Genetics · doi:10.1038/ng0398-231 · Cited by 1,594
Peroxisome proliferator–activated receptor γ coactivator-1 promotes cardiac mitochondrial biogenesis
Lehman, J. J., Barger, P. M., Kovacs, A., Saffitz, J. E., Medeiros, D. M., & Kelly, D. P. (2000) · Journal of Clinical Investigation · doi:10.1172/jci10268 · Cited by 1,285
Transcriptional regulatory circuits controlling mitochondrial biogenesis and function
Kelly, D. P., & Scarpulla, R. C. (2004) · Genes & Development · doi:10.1101/gad.1177604 · Cited by 1,243
Vega, R. B., Huss, J. M., & Kelly, D. P. (2000) · Molecular and Cellular Biology · doi:10.1128/mcb.20.5.1868-1876.2000 · Cited by 1,195
MITOCHONDRIAL DNA MAINTENANCE IN VERTEBRATES
Shadel, G. S., & Clayton, D. A. (1997) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.66.1.409 · Cited by 1,059
Virbasius, J. V., & Scarpulla, R. C. (1994) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.91.4.1309 · Cited by 819
Nuclear activators and coactivators in mammalian mitochondrial biogenesis
Scarpulla, R. C. (2002) · Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression · doi:10.1016/s0167-4781(02)00343-3 · Cited by 638
Takahashi, Y., Rayman, J. B., & Dynlacht, B. D. (2000) · Genes & Development · doi:10.1101/gad.14.7.804 · Cited by 621
Activation of PPARγ Coactivator-1 Through Transcription Factor Docking
Puigserver, P., Adelmant, G., Wu, Z., Fan, M., Xu, J., O’Malley, B. W., & Spiegelman, B. M. (1999) · Science · doi:10.1126/science.286.5443.1368 · Cited by 605
Mitochondrial transcription factors B1 and B2 activate transcription of human mtDNA
Falkenberg, M., Gaspari, M., Rantanen, A., Trifunovic, A., Larsson, N.-G., & Gustafsson, C. M. (2002) · Nature Genetics · doi:10.1038/ng909 · Cited by 598 · cited 2×
“Most recently, two isoforms of a human mitochondrial transcription specificity factor, termed TFB1M and TFB2M (also known as h-mtTFB), have also been identified (9, 20).”
BackgroundCROSSTALK BETWEEN NUCLEAR AND MITOCHONDRIAL GENOMES
Poyton, R. Ο., & McEwen, J. E. (1996) · Annual Review of Biochemistry · doi:10.1146/annurev.bi.65.070196.003023 · Cited by 499
Wilson-Fritch, L., Burkart, A., Bell, G., Mendelson, K., Leszyk, J., Nicoloro, S., Czech, M., & Corvera, S. (2003) · Molecular and Cellular Biology · doi:10.1128/mcb.23.3.1085-1094.2003 · Cited by 459
Andersson, U., & Scarpulla, R. C. (2001) · Molecular and Cellular Biology · doi:10.1128/mcb.21.11.3738-3749.2001 · Cited by 374
Scarpulla, R. (2002) · Gene · doi:10.1016/s0378-1119(01)00809-5 · Cited by 371
Virbasius, C.-M. A., Virbasius, J. V., & Scarpulla, R. C. (1993) · Genes & Development · doi:10.1101/gad.7.12a.2431 · Cited by 356
A close relative of the nuclear, chromosomal high-mobility group protein HMG1 in yeast mitochondria.
Diffley, J. F. X., & Stillman, B. (1991) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.88.17.7864 · Cited by 329
Animal mitochondrial biogenesis and function: a regulatory cross-talk between two genomes
Garesse, R., & Vallejo, C. G. (2001) · Gene · doi:10.1016/s0378-1119(00)00582-5 · Cited by 307
Tiranti, V., Savoia, A., Forti, F., d'Apolito, M., Centra, M., Rocchi, M., & Zeviani, M. (1997) · Human Molecular Genetics · doi:10.1093/hmg/6.4.615 · Cited by 230
McCulloch, V., Seidel-Rogol, B. L., & Shadel, G. S. (2002) · Molecular and Cellular Biology · doi:10.1128/mcb.22.4.1116-1125.2002 · Cited by 200
Herzig, R. P., Scacco, S., & Scarpulla, R. C. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.275.17.13134 · Cited by 197
Dairaghi, D. J., Shadel, G. S., & Clayton, D. A. (1995) · Journal of Molecular Biology · doi:10.1006/jmbi.1995.9889 · Cited by 197
Human mitochondrial transcription factor B1 methylates ribosomal RNA at a conserved stem-loop
Seidel-Rogol, B. L., McCulloch, V., & Shadel, G. S. (2002) · Nature Genetics · doi:10.1038/ng1064 · Cited by 188
Virbasius, J. V., & Scarpulla, R. C. (1991) · Molecular and Cellular Biology · doi:10.1128/mcb.11.11.5631 · Cited by 160
McCulloch, V., & Shadel, G. S. (2003) · Molecular and Cellular Biology · doi:10.1128/mcb.23.16.5816-5824.2003 · Cited by 142
Gugneja, S., Virbasius, J. V., & Scarpulla, R. C. (1995) · Molecular and Cellular Biology · doi:10.1128/mcb.15.1.102 · Cited by 122
Gugneja, S., & Scarpulla, R. C. (1997) · Journal of Biological Chemistry · doi:10.1074/jbc.272.30.18732 · Cited by 113
Mitochondrial DNA Replication: What We Know
Clayton, D. A. (2003) · IUBMB Life · doi:10.1080/1521654031000134824 · Cited by 85
Zaid, A., Li, R., Luciaková, K., Baráth, P., Nery, S. V., & Nelson, B. D. (1999) · Journal of Bioenergetics and Biomembranes · doi:10.1023/a:1005499727732 · Cited by 82
Distinct Roles for Two Purified Factors in Transcription of Xenopus Mitochondrial DNA
Antoshechkin, I. A., & Bogenhagen, D. F. (1995) · Molecular and Cellular Biology · doi:10.1128/mcb.15.12.7032 · Cited by 82
Li, R., Hodný, Z., Luciaková, K., Baráth, P., & Nelson, B. D. (1996) · Journal of Biological Chemistry · doi:10.1074/jbc.271.31.18925 · Cited by 79
Herzig, R. P., Andersson, U., & Scarpulla, R. C. (2000) · Journal of Cell Science · doi:10.1242/jcs.113.23.4263 · Cited by 49
Bogenhagen, D. F. (1996) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)82655-2 · Cited by 45
Choi, Y. S., Lee, H. K., & Pak, Y. K. (2002) · Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression · doi:10.1016/s0167-4781(01)00361-x · Cited by 40
Characterization of the mouse genes for mitochondrial transcription factors B1 and B2
Rantanen, A., Gaspari, M., Falkenberg, M., Gustafsson, C. M., & Larsson, N. (2003) · Mammalian Genome · doi:10.1007/s00335-002-2218-z · Cited by 38
Virbasius, J. V., & Scarpulla, R. C. (1991) · Molecular and Cellular Biology · doi:10.1128/mcb.11.11.5631-5638.1991 · Cited by 20
Cited by
Sorted by citations
Transcriptional paradigms in mammalian mitochondrial biogenesis and function
Scarpulla, R. C. (2008) · Physiological Reviews · doi:10.1152/physrev.00025.2007 · Cited by 1,666
Self-citationMetabolic control of mitochondrial biogenesis through the PGC-1 family regulatory network
Scarpulla, R. C. (2011) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/j.bbamcr.2010.09.019 · Cited by 1,281
Regulation of energy metabolism by long-chain fatty acids
Nakamura, M., Yudell, B. E., & Loor, J. J. (2013) · Progress in Lipid Research · doi:10.1016/j.plipres.2013.12.001 · Cited by 858
Transcriptional integration of mitochondrial biogenesis
Scarpulla, R. C., Vega, R. B., & Kelly, D. P. (2012) · Trends in Endocrinology & Metabolism · doi:10.1016/j.tem.2012.06.006 · Cited by 798
Mitonuclear communication in homeostasis and stress
Quirós, P. M., Mottis, A., & Auwerx, J. (2016) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm.2016.23 · Cited by 787
Metadata
- Authors
- Gleyzer, N., Vercauteren, K., & Scarpulla, R. C.
- Affiliations
- Northwestern University (US)
- Corresponding author
- Scarpulla, Richard C.
- Venue
- Molecular and Cellular Biology
- Publisher
- Informa UK Limited
- Published
- 2005-02-01
- Volume
- 25
- Issue
- 4
- Pages
- 1354-1366
- ISSN
- 0270-7306 (ISSN-L)
- 1098-5549
- PMC
- PMC548005
- OpenAlex
- W2158088166
- Cited by
- 711
- References
- 39
- Citations by year
- 2026: 26 · 2025: 44 · 2024: 38 · 2023: 46 · 2022: 45 · 2021: 40 · 2020: 40 · 2019: 39 · 2018: 43 · 2017: 27 · 2016: 27 · 2015: 34 · 2014: 22 · 2013: 33 · 2012: 32
- FWCI
- 10.08
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Molecular and Cellular Biology (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- U.S. Public Health Service
- National Institute of General Medical Sciences (GM32525-22, R56GM032525, R01GM032525)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Mitochondrial Function and Pathology
- Health Sciences › Medicine › Physiology (medical) › Adipose Tissue and Metabolism
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Metabolism, Diabetes, and Cancer
- Keywords
- TFB1M, TFB2M, nuclear respiratory factors, NRF1, Nrf2, PGC-1α, mitochondrial biogenesis, mitochondrial transcription, TFAM, transcriptional regulation, mitochondrial RNA polymerase
- MeSH terms
- Peroxisome Proliferator-Activated Receptor Gamma Coactivator 1-alpha, Animals, Base Sequence, DNA-Binding Proteins, DNA, Mitochondrial, High Mobility Group Proteins, Humans, Methyltransferases, Molecular Sequence Data, Nuclear Proteins, Promoter Regions, Genetic, Transcription Factors, Trans-Activators, Up-Regulation, Mitochondrial Proteins, Electrophoretic Mobility Shift Assay, BALB 3T3 Cells, 3T3-L1 Cells, Nuclear Respiratory Factors, NF-E2-Related Factor 1, Nuclear Respiratory Factor 1, NF-E2-Related Factor 2, Mice
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review