Gut Microbiota and Colonization Resistance against Bacterial Enteric Infection

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Crosstalks Between Gut Microbiota and Vibrio Cholerae

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Interplay between gut microbiota and bile acids in diarrhoea-predominant irritable bowel syndrome: a review

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Promising dawn in the management of pulmonary hypertension: The mystery veil of gut microbiota

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Two intestinal microbiota-derived metabolites, deoxycholic acid and butyrate, synergize to enhance host defense peptide synthesis and alleviate necrotic enteritis

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Intestinal Microbiota in Common Chronic Inflammatory Disorders Affecting Children

Torun, A., Hupalowska, A., Trzonkowski, P., Kierkuś, J., & Pyrzyńska, B. (2021) · Frontiers in Immunology · doi:10.3389/fimmu.2021.642166 · Cited by 40

Emerging epigenetic dynamics in gut-microglia brain axis: experimental and clinical implications for accelerated brain aging in schizophrenia

Ben‐Azu, B., del Re, E. C., VanderZwaag, J., Carrier, M., Keshavan, M. S., Khakpour, M., & Tremblay, M. (2023) · Frontiers in Cellular Neuroscience · doi:10.3389/fncel.2023.1139357 · Cited by 32

The synergistic effects of polyphenols and intestinal microbiota on osteoporosis

Wang, K., & Hu, S. (2023) · Frontiers in Immunology · doi:10.3389/fimmu.2023.1285621 · Cited by 32

Adenosine in Intestinal Epithelial Barrier Function

Stepanova, M., & Aherne, C. M. (2024) · Cells · doi:10.3390/cells13050381 · Cited by 34

Detection of the bacteria concentration level in pasteurized milk by using two different artificial multisensory methods

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Human Microbiome and Its Medical Applications

Zhang, Y., Zhou, L., Xia, J., Dong, C., & Luo, X. (2022) · Frontiers in Molecular Biosciences · doi:10.3389/fmolb.2021.703585 · Cited by 32

The Stickland Reaction Precursor trans -4-Hydroxy- l -Proline Differentially Impacts the Metabolism of Clostridioides difficile and Commensal Clostridia

Reed, A. D., Fletcher, J. R., Huang, Y. Y., Thanissery, R., Rivera, A. J., Parsons, R., Stewart, A. K., Kountz, D. J., Shen, A., Balskus, E. P., et al. (2022) · mSphere · doi:10.1128/msphere.00926-21 · Cited by 31

Enterobacteriaceae and Bacteroidaceae provide resistance to travel-associated intestinal colonization by multi-drug resistant Escherichia coli

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Bile acids, bioactive signalling molecules in interoceptive gut‐to‐brain communication

Joyce, S. A., & O'Malley, D. (2022) · The Journal of Physiology · doi:10.1113/jp281727 · Cited by 32

The role of the blood group-related glycosyltransferases FUT2 and B4GALNT2 in susceptibility to infectious disease

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Pharmacological mechanism of Shenlingbaizhu formula against experimental colitis

Yu, W., Wang, G., Lu, C., Liu, C., Jiang, L., Jiang, Z., Liang, Z., Wang, X., Qin, Z., & Yan, J. (2022) · Phytomedicine · doi:10.1016/j.phymed.2022.153961 · Cited by 31

Orally Administered Drugs and Their Complicated Relationship with Our Gastrointestinal Tract

Bashiardes, S., & Christodoulou, C. (2024) · Microorganisms · doi:10.3390/microorganisms12020242 · Cited by 36

Flavodoxins as Novel Therapeutic Targets against Helicobacter pylori and Other Gastric Pathogens

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Association of Chronic Immune-Mediated Diarrhea and Colitis With Favorable Cancer Response

Zou, F., Abu‐Sbeih, H., Ma, W., Peng, Y., Qiao, W., Wang, J., Shah, A. Y., Oliva, I. C. G., Piha-Paul, S. A., Thompson, J. A., et al. (2021) · Journal of the National Comprehensive Cancer Network · doi:10.6004/jnccn.2020.7647 · Cited by 30

Clostridioides difficile infection induces a rapid influx of bile acids into the gut during colonization of the host

Wexler, A. G., Guiberson, E. R., Beavers, W. N., Shupe, J. A., Washington, M. K., Lacy, D. B., Caprioli, R. M., Spraggins, J. M., & Skaar, E. P. (2021) · Cell Reports · doi:10.1016/j.celrep.2021.109683 · Cited by 32

Overview of Bacterial Protein Toxins from Pathogenic Bacteria: Mode of Action and Insights into Evolution

Popoff, M. R. (2024) · Toxins · doi:10.3390/toxins16040182 · Cited by 29

Gut microbiota induced epigenetic modifications in the non‐alcoholic fatty liver disease pathogenesis

Tang, R., Liu, R., Zha, H., Cheng, Y., Ling, Z., & Li, L. (2023) · Engineering in Life Sciences · doi:10.1002/elsc.202300016 · Cited by 29

Murine Models for the Investigation of Colonization Resistance and Innate Immune Responses in Campylobacter Jejuni Infections

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Bacterial envelope stress responses: Essential adaptors and attractive targets

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The development of live biotherapeutics against Clostridioides difficile infection towards reconstituting gut microbiota

Zhang, Y., Fleur, A. S., & Feng, H. (2022) · Gut Microbes · doi:10.1080/19490976.2022.2052698 · Cited by 27

In vitro and ex vivo modeling of enteric bacterial infections

Taebnia, N., Römling, U., & Lauschke, V. M. (2022) · Gut Microbes · doi:10.1080/19490976.2022.2158034 · Cited by 29

Association of antimicrobial resistance and gut microbiota composition in human and non-human primates at an urban ecotourism site

Chong, C. W., Alkatheeri, A. H. S., Ali, N., Tay, Z. H., Lee, Y. L., Paramasivam, S. J., Jeevaratnam, K., Low, W. Y., & Lim, S. E. (2020) · Gut Pathogens · doi:10.1186/s13099-020-00352-x · Cited by 28

Diet, Probiotics and Physical Activity: The Right Allies for a Healthy Microbiota

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Is there a role of faecal microbiota transplantation in reducing antibiotic resistance burden in gut? A systematic review and Meta-analysis

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Interactions between parasitic helminths and gut microbiota in wild tropical primates from intact and fragmented habitats

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Fungus–insect interactions beyond bilateral regimes: the importance and strategy to outcompete host ectomicrobiomes by fungal parasites

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Advances in single-cell sequencing technology in microbiome research

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Clearance of Clostridioides difficile Colonization Is Associated with Antibiotic-Specific Bacterial Changes

Lesniak, N. A., Schubert, A. M., Sinani, H., & Schloss, P. D. (2021) · mSphere · doi:10.1128/msphere.01238-20 · Cited by 26

Gut Microbiota is an Important Source of Bacteriocins and Their In Situ Expression Can Be Explored for Treatment of Bacterial Infections

Drider, D. (2021) · Probiotics and Antimicrobial Proteins · doi:10.1007/s12602-021-09843-y · Cited by 26

Enterohemorrhagic Escherichia coli and a Fresh View on Shiga Toxin-Binding Glycosphingolipids of Primary Human Kidney and Colon Epithelial Cells and Their Toxin Susceptibility

Detzner, J., Pohlentz, G., & Müthing, J. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms23136884 · Cited by 28

Effects of Rosa roxburghii & edible fungus fermentation broth on immune response and gut microbiota in immunosuppressed mice

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Malnourished Microbes: Host–Microbiome Interactions in Child Undernutrition

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Catalpol ameliorates LPS-induced inflammatory response by activating AMPK/mTOR signaling pathway in rat intestinal epithelial cells

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Gut microbiota composition and changes in patients with sepsis: potential markers for predicting survival

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Microbe-Driven Genotoxicity in Gastrointestinal Carcinogenesis

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Safety evaluation of indigenous probiotic Limosilactobacillus fermentum NCDC 400 using whole genome sequences and in vitro approaches

Nataraj, B. H., Kumari, M., Nagpal, R., Ali, S. A., & Behare, P. V. (2023) · Food Bioscience · doi:10.1016/j.fbio.2023.103101 · Cited by 24

Contemporary Perioperative Nutritional Care

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Safety and Tolerability of CP101, a Full-Spectrum, Oral Microbiome Therapeutic for the Prevention of Recurrent Clostridioides difficile Infection: A Phase 2 Randomized Controlled Trial

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Stratified biofilm structure of MABR enabling efficient ammonia removal from aquaculture medicated bath wastewater

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Siderophore piracy enhances Vibrio cholerae environmental survival and pathogenesis

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Host and Environmental Sensing by Entomopathogenic Fungi to Infect Hosts

Shang, J., Tang, G., Lu, M., & Wang, C. (2022) · Current Clinical Microbiology Reports · doi:10.1007/s40588-022-00185-z · Cited by 23

Alternating magnetic field-responsive engineered probiotics for anxiety therapy via gut-brain axis modulation

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The gut microbiota and host immunity synergistically orchestrate colonization resistance

Li, N., & Guo, X. (2026) · Gut Microbes · doi:10.1080/19490976.2025.2611545 · Cited by 26

Gut microbiome, enteric infections and child growth across a rural–urban gradient: protocol for the ECoMiD prospective cohort study

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Mouse Subcutaneous BCG Vaccination and Mycobacterium tuberculosis Infection Alter the Lung and Gut Microbiota

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New insights into the impact of microbiome on horizontal and vertical transmission of a tick-borne pathogen

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Complete Genome Sequence and Probiotic Properties of Pediococcus acidilactici CLP03 Isolated from Healthy Felis catus

Zhao, M., Zhang, Y., Li, Y., Liu, K., Zhang, C., & Li, G. (2023) · Probiotics and Antimicrobial Proteins · doi:10.1007/s12602-023-10187-y · Cited by 22

Effects of a Fermented Dairy Drink Containing Lacticaseibacillus paracasei subsp. paracasei CNCM I-1518 (Lactobacillus casei CNCM I-1518) and the Standard Yogurt Cultures on the Incidence, Duration, and Severity of Common Infectious Diseases: A Systematic Review and Meta-Analysis of Randomized Controlled Trials

Poon, T., Juana, J., Noori, D., Jeansen, S., Pierucci-Lagha, A., & Musa-Veloso, K. (2020) · Nutrients · doi:10.3390/nu12113443 · Cited by 21

Polystyrene microplastics promote intestinal colonization of Aeromonas veronii through inducing intestinal microbiota dysbiosis

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Intestinal Barrier Dysfunction Participates in the Pathophysiology of Ischemic Stroke

Wei, M., Huang, Q., Liu, Z., Luo, Y., & Xia, J. (2021) · CNS & Neurological Disorders - Drug Targets · doi:10.2174/1871527320666210322115808 · Cited by 19

Gut Microbiota, the Potential Biological Medicine for Prevention, Intervention and Drug Sensitization to Fight Diseases

Wu, H., Chen, X., Zhang, S., & Li, J. (2022) · Nutrients · doi:10.3390/nu14204220 · Cited by 20

Bacterial composition of a competitive exclusion product and its correlation with product efficacy at reducing Salmonella in poultry

Lee, M. D., Pedroso, A. A., & Maurer, J. J. (2023) · Frontiers in Physiology · doi:10.3389/fphys.2022.1043383 · Cited by 21

Evaluation of a Dual-Acting Antibacterial Agent, TNP-2092, on Gut Microbiota and Potential Application in the Treatment of Gastrointestinal and Liver Disorders

Yuan, Y., Wang, X., Xu, X., Liu, Y., CanCan, L., Meng, Y., Yang, Y., & Ma, Z. (2019) · ACS Infectious Diseases · doi:10.1021/acsinfecdis.9b00374 · Cited by 21

Integrated oral-gut microbiota therapy: a novel perspective on preventing bacterial translocation for systemic disease management

Zhu, J., Jiang, Z., Yu, F., Gao, L., Wang, X., & Wang, Q. (2025) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2025.1641816 · Cited by 20

A pathogen-specific sRNA influences enterohemorrhagic Escherichia coli fitness and virulence in part by direct interaction with the transcript encoding the ethanolamine utilization regulatory factor EutR

Sauder, A. B., & Kendall, M. M. (2021) · Nucleic Acids Research · doi:10.1093/nar/gkab863 · Cited by 22

Development and Validation of a Novel Microbiome-Based Biomarker of Post-antibiotic Dysbiosis and Subsequent Restoration

Blount, K., Jones, C. R., Walsh, D. M., Gonzalez, C., & Shannon, W. D. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.781275 · Cited by 23

Clostridium butyricum Inhibits Fat Deposition via Increasing the Frequency of Adipose Tissue‐Resident Regulatory T Cells

Li, H., Jia, Y., Weng, D., Ju, Z., Zhao, Y., Liu, S., Liu, Y., Song, M., Cui, L., Sun, S., et al. (2022) · Molecular Nutrition & Food Research · doi:10.1002/mnfr.202100884 · Cited by 20

An Intestinal Bacillus velezensis Isolate Displays Broad-Spectrum Antibacterial Activity and Prevents Infection of Both Gram-Positive and Gram-Negative Pathogens In Vivo

Byun, H., Brockett, M. R., Pu, Q., Hrycko, A. J., Beld, J., & Zhu, J. (2023) · Journal of Bacteriology · doi:10.1128/jb.00133-23 · Cited by 20

Regulation of host gene expression by gastrointestinal tract microbiota in Chinook Salmon ( Oncorhynchus tshawytscha )

Sadeghi, J., Chaganti, S. R., & Heath, D. D. (2023) · Molecular Ecology · doi:10.1111/mec.17039 · Cited by 20

Identification of a microbial sub-community from the feral chicken gut that reduces Salmonella colonization and improves gut health in a gnotobiotic chicken model

Wongkuna, S., Ambat, A., Ghimire, S., Mattiello, S. P., Maji, A., Kumar, R., Antony, L., Chankhamhaengdecha, S., Janvilisri, T., Nelson, E. A., et al. (2024) · Microbiology Spectrum · doi:10.1128/spectrum.01621-23 · Cited by 20

Microbes Saving Lives and Reducing Suffering

Timmis, K. N., Karahan, Z. C., Ramos, J. L., Koren, O., Pérez‐Cobas, A. E., Steward, K. F., de Lorenzo, V., Caselli, E., Douglas, M., Schwab, C., et al. (2025) · Microbial Biotechnology · doi:10.1111/1751-7915.70068 · Cited by 23

Vancomycin-resistant enterococci utilise antibiotic-enriched nutrients for intestinal colonisation

King, O. G., Yip, A., Horrocks, V., Blanco, J. M., Marchesi, J. R., Mullish, B. H., Clarke, T. B., & McDonald, J. A. K. (2025) · Nature Communications · doi:10.1038/s41467-025-61731-z · Cited by 21

Therapeutic Approach Targeting Gut Microbiome in Gastrointestinal Infectious Diseases

Han, Z., Min, Y., Pang, K., & Wu, D. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms242115654 · Cited by 19

Bifidobacterium longum subsp. infantis CECT7210 (B. infantis IM-1®) Displays In Vitro Activity against Some Intestinal Pathogens

Ruíz, L., Flórez, A. B., Sánchez, B., Moreno-Muñoz, J. A., Rodríguez-Palmero, M., Jiménez, J., Reyes‐Gavilán, C. G. D. L., Gueimonde, M., Ruas‐Madiedo, P., & Margollés, A. (2020) · Nutrients · doi:10.3390/nu12113259 · Cited by 20

Genomic Characterization of a Novel Tenericutes Bacterium from Deep-Sea Holothurian Intestine

Zhu, F.-C., Lian, C., & He, L. (2020) · Microorganisms · doi:10.3390/microorganisms8121874 · Cited by 18

Shigella -Specific Immune Profiles Induced after Parenteral Immunization or Oral Challenge with Either Shigella flexneri 2a or Shigella sonnei

Clarkson, K. A., Porter, C. K., Talaat, K. R., Frenck, R. W., Alaimo, C., MARTIN, P. A., Bourgeois, A. L., & Kaminski, R. W. (2021) · mSphere · doi:10.1128/msphere.00122-21 · Cited by 19

Metabolic tug-of-war: Microbial metabolism shapes colonization resistance against enteric pathogens

Jones, K., de Brito, C. B., & Byndloss, M. X. (2025) · Cell chemical biology · doi:10.1016/j.chembiol.2024.12.005 · Cited by 20

Investigating the use of bacteriophages as a new decolonization strategy for intestinal carriage of CTX-M-15-producing ST131 Escherichia coli: An in vitro continuous culture system model

Bernasconi, O. J., Campos-Madueno, E. I., Donà, V., Perreten, V., Carattoli, A., & Endimiani, A. (2020) · Journal of Global Antimicrobial Resistance · doi:10.1016/j.jgar.2020.05.018 · Cited by 18

Advancing gut microbiome insights: Graphene quantum dot nanobiosensors for microbial metabolite detection

Sadr, S., Nazemian, S., Dianaty, S., Hajjafari, A., Fazel, B., Rezaei, A., Rahdar, A., Fathi‐karkan, S., Bayat, M., Pandey, S., et al. (2025) · Chemical Engineering Journal · doi:10.1016/j.cej.2025.162954 · Cited by 19

In vitro and intracellular activities of frog skin temporins against Legionella pneumophila and its eukaryotic hosts

Crépin, A., Jégou, J., André, S., Écale, F., Croitoru, A., Cantereau, A., Berjeaud, J., Ladram, A., & Verdon, J. (2020) · Scientific Reports · doi:10.1038/s41598-020-60829-2 · Cited by 18

Protective effect of gut microbiota restored by fecal microbiota transplantation in a sepsis model in juvenile mice

Han, Y. J., Kim, S., Shin, H., Kim, H. W., & Park, J. D. (2024) · Frontiers in Immunology · doi:10.3389/fimmu.2024.1451356 · Cited by 17

The protective role of commensal gut microbes and their metabolites against bacterial pathogens

Cheng, L., Correia, M. S. P., Higdon, S. M., García, F. R., Tsiara, I., Joffré, E., Sjöling, Å., Boulund, F., Norin, E. L., Engstrand, L. G., et al. (2024) · Gut Microbes · doi:10.1080/19490976.2024.2356275 · Cited by 17

Microbiome and Metabolome Restoration After Administration of Fecal Microbiota, Live-jslm (REBYOTA) for Preventing Recurrent Clostridioides difficile Infection

Blount, K., Papazyan, R., Ferdyan, N., Srinivasan, K., Gonzalez, C., Shannon, W. D., & Fuchs, B. C. (2024) · The Journal of Infectious Diseases · doi:10.1093/infdis/jiae418 · Cited by 17

Enhancing resistance to Salmonella typhimurium in yellow-feathered broilers: a study of a strain of Lactiplantibacillus plantarum as probiotic feed additives

Yin, Y., Peng, H., Bai, H., Pei, Z., Chen, Z., Ma, C., Zhu, M., Li, J., Li, C., Gong, Y., et al. (2024) · Frontiers in Microbiology · doi:10.3389/fmicb.2024.1450690 · Cited by 18

The gut microbiome: an emerging epicenter of antimicrobial resistance?

Deshpande, S. V., Sujith, S., Jobby, R., Rajasekharan, S. K., Ravichandran, V., & Solomon, A. P. (2025) · Frontiers in Microbiology · doi:10.3389/fmicb.2025.1593065 · Cited by 19

Gut Phage Database: phage mining in the cave of wonders

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Integrated Metagenomic and Transcriptomic Analyses Reveal the Dietary Dependent Recovery of Host Metabolism From Antibiotic Exposure

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