Gut Microbiota and Colonization Resistance against Bacterial Enteric Infection

Manual of Clinical Microbiology.

(1980) · Annals of Internal Medicine · doi:10.7326/0003-4819-93-6-939_2 · Cited by 14,435

Diversity of the Human Intestinal Microbial Flora

Eckburg, P. B., Bik, E. M., Bernstein, C. N., Purdom, E., Dethlefsen, L., Sargent, M., Gill, S. R., Nelson, K. E., & Relman, D. A. (2005) · Science · doi:10.1126/science.1110591 · Cited by 7,913

A core gut microbiome in obese and lean twins

Turnbaugh, P. J., Hamady, M., Yatsunenko, T., Cantarel, B. L., Duncan, A., Ley, R. E., Sogin, M. L., Jones, W. J., Roe, B. A., Affourtit, J. P., et al. (2009) · Nature · doi:10.1038/nature07540 · Cited by 7,823

A metagenome-wide association study of gut microbiota in type 2 diabetes

Qin, J., Li, Y., Cai, Z., Li, S., Zhu, J., Zhang, F., Liang, S., Zhang, W., Guan, Y., Shen, D., et al. (2012) · Nature · doi:10.1038/nature11450 · Cited by 6,762

Origins and evolution of antibiotic resistance

Davies, J., & Davies, D. (2010) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00016-10 · Cited by 5,784

Revised Estimates for the Number of Human and Bacteria Cells in the Body

Sender, R., Fuchs, S., & Milo, R. (2016) · PLOS Biology · doi:10.1371/journal.pbio.1002533 · Cited by 5,425

The gut microbiota--masters of host development and physiology

Sommer, F., & Bäckhed, F. (2013) · Nature Reviews Microbiology · doi:10.1038/nrmicro2974 · Cited by 3,681

Intestinal epithelial cells: regulators of barrier function and immune homeostasis

Peterson, L. W., & Artis, D. (2014) · Nature reviews. Immunology · doi:10.1038/nri3608 · Cited by 3,367

Short chain fatty acids in human large intestine, portal, hepatic and venous blood

Cummings, J. H., Pomare, E. W., Branch, W. J., Naylor, C. P., & Macfarlane, G. T. (1987) · Gut · doi:10.1136/gut.28.10.1221 · Cited by 3,119

Effects of Salmonella Typhimurium Infection on the Gut Microbiota of Cherry Valley Meat Ducks

Zheng, Y., Pan, X., Hou, J., Shi, W., Sun, S., Song, M., & Gao, Z. (2024) · Microorganisms · doi:10.3390/microorganisms12030602 · Cited by 6

Diluted Fecal Community Transplant Restores Clostridioides difficile Colonization Resistance to Antibiotic-Perturbed Murine Communities

Lesniak, N. A., Tomkovich, S., Henry, A., Taylor, A., Colovas, J., Bishop, L., McBride, K., & Schloss, P. D. (2022) · mBio · doi:10.1128/mbio.01364-22 · Cited by 6

The Pharmacological Mechanism of Guchangzhixie Capsule Against Experimental Colitis

Yan, J., Yu, W., Lu, C., Liu, C., Wang, G., Jiang, L., Jiang, Z., & Qin, Z. (2021) · Frontiers in Pharmacology · doi:10.3389/fphar.2021.762603 · Cited by 6

Alginate oligosaccharides derived from tropical brown seaweeds as sustainable alternatives to antibiotic growth promoters in poultry nutrition: Functional mechanisms and production perspectives

Reski, S., Mahata, L. E., Rizal, Y., & Dewi, Y. L. (2026) · Veterinary World · doi:10.14202/vetworld.2026.224-263 · Cited by 6

Gut microbiota-derived short-chain fatty acids (SCFAs): immunomodulatory effects and therapeutic potential in infections

Yu, J., Li, W., Xu, Y. M., & Tang, J. (2026) · Clinical Microbiology Reviews · doi:10.1128/cmr.00368-25 · Cited by 6

Lactobacillus crispatus 7-4 Mitigates Salmonella typhimurium-Induced Enteritis via the γ‑Glutamylcysteine-Mediated Nrf2 Pathway

Wu, H., Ding, C., Chi, C., Liu, S., Gao, Z., Sun, W., Zhao, H., & Song, S. (2024) · Probiotics and Antimicrobial Proteins · doi:10.1007/s12602-024-10294-4 · Cited by 5

Masks As a New Hotspot for Antibiotic Resistance Gene Spread: Reveal the Contribution of Atmospheric Pollutants and Potential Risks

Wang, Y., Wang, Q., Zhang, G., Li, Y., Guo, H., Zhou, J., Wang, T., Jia, H., & Zhu, L. Y. (2024) · Environmental Science & Technology · doi:10.1021/acs.est.4c03399 · Cited by 5

Linking severe traumatic brain injury to pulmonary Infections: Translocation of intestinal bacteria mediated by nociceptor neurons

You, X., Niu, L., Song, X., Fu, J., Miao, Y., Diao, F., Wu, C., Zhuang, P., & Zhang, Y. (2024) · Brain Behavior and Immunity · doi:10.1016/j.bbi.2024.08.041 · Cited by 5

Profiling the fecal microbiome and its modulators across the lifespan in the Netherlands

Boverhoff, D., Kool, J., Pijnacker, R., Ducarmon, Q. R., Zeller, G., Shetty, S. A., Sie, S., Mulder, A. C., van der Klis, F. R. M., Franz, E., et al. (2024) · Cell Reports · doi:10.1016/j.celrep.2024.114729 · Cited by 5

Follow your Gut: Microbiome-Based Approaches in the Developmental Pipeline for the Prevention and Adjunctive Treatment of Clostridioides difficile Infection (CDI)

Gonzales-Luna, A. J., & Carlson, T. J. (2020) · Current Infectious Disease Reports · doi:10.1007/s11908-020-00729-8 · Cited by 5

Gut Microbiome of a Multiethnic Community Possessed No Predominant Microbiota

Khine, W. W. T., Teo, A. H. T., Loong, L. W. W., Tan, J. J. H., Ang, C. G. H., Ng, W., Lee, C. N., Zhu, C., Lau, Q. C., & Lee, Y. K. (2021) · Microorganisms · doi:10.3390/microorganisms9040702 · Cited by 6

Environmentally Acquired Bacillus and Their Role in C. difficile Colonization Resistance

Ferreira, W. T., Hong, H. A., Adams, J. R. G., Hess, M., Kotowicz, N. K., Tan, S., Ferrari, E., Brisson, A. R., Zentek, J., Soloviev, M., et al. (2022) · Biomedicines · doi:10.3390/biomedicines10050930 · Cited by 5

Changes in the composition and function of the gut microbiota in celiac disease

Mostafaei, F. S. G., Rostami‐Nejad, M., Emadi, A., Yadegar, A., Aghdaei, H. A., & Zali, M. R. (2021) · کومش · doi:10.52547/koomesh.23.3.301 · Cited by 6

Metagenomic analysis of gut microbiome and resistome of Whooper and Black Swans: a one health perspective

Fu, Y., Zhang, K., Shan, F., Li, J., Wang, Y., Li, X., Xu, H., Qin, Z., & Zhang, L. (2023) · BMC Genomics · doi:10.1186/s12864-023-09742-2 · Cited by 6

Infectious Inequity: How the Gut Microbiome and Social Determinants of Health May Contribute to Clostridioides difficile Infection Among Racial and Ethnic Minorities

Reveles, K. R., Strey, K. A., Abdul‐Mutakabbir, J. C., Mendoza, V. M., & Carreno, J. J. (2023) · Clinical Infectious Diseases · doi:10.1093/cid/ciad586 · Cited by 6

Impact of Plasmodium relictum Infection on the Colonization Resistance of Bird Gut Microbiota: A Preliminary Study

Aželytė, J., Maître, A., Abuin‐Denis, L., Piloto‐Sardiñas, E., Chuang, A. W., Žiegytė, R., Mateos‐Hernández, L., Obregón, D., Cabezas‐Cruz, A., & Palinauskas, V. (2024) · Pathogens · doi:10.3390/pathogens13010091 · Cited by 5

Interactions between maternal parity and feed additives drive the composition of pig gut microbiomes in the post-weaning period

Law, K., Garcia, E. R. M., Hastad, C. W., Murray, D., Urriola, P. E., & Gomez, A. M. (2024) · Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology · doi:10.1186/s40104-024-00993-x · Cited by 5

The Consumption of Lacticaseibacillus rhamnosus HDB1258 Changes Human Gut Microbiota and Induces Immune Enhancement Through NK Cell Activation

Lee, J.-J., Kim, K., Kim, H.-J., Sohn, J., Song, J., Koo, H. Y., & Lee, S. (2024) · Microorganisms · doi:10.3390/microorganisms12102109 · Cited by 5

Engineered Bacillus subtilis WB600/ZD prevents Salmonella Infantis-induced intestinal inflammation and alters the colon microbiota in a mouse model

Li, W., Wang, X., Chen, K., Zhu, Y., Yang, G., Jin, Y., & Wang, J. (2025) · Veterinary Research · doi:10.1186/s13567-024-01438-z · Cited by 5

Altering Routine Intensive Care Unit Practices to Support Commensalism

Hamilton, L. A., & Behal, M. L. (2020) · Nutrition in Clinical Practice · doi:10.1002/ncp.10484 · Cited by 5

Intestinal microbiota changes pre- and post-fecal microbiota transplantation for treatment of recurrent Clostridioides difficile infection among Iranian patients with concurrent inflammatory bowel disease

Gholam-Mostafaei, F. S., Azimirad, M., Naseri, K., Nabavi-Rad, A., Aghdaei, H. A., Shahrokh, S., Daryani, N. E., Yadegar, A., & Zali, M. R. (2023) · Frontiers in Microbiology · doi:10.3389/fmicb.2023.1147945 · Cited by 5

Gut microbiome dynamics in index patients colonized with extended-spectrum beta-lactamase (ESBL)-producing Enterobacterales after hospital discharge and their household contacts

Top, J., Verschuuren, T. D., Viveen, M. C., Riccio, M. E., Harbarth, S., Kluytmans, J. A. J. W., Willems, R. J. L., & Paganelli, F. L. (2023) · Microbiology Spectrum · doi:10.1128/spectrum.01275-23 · Cited by 6

Unexpected Results From a Phase 2 Trial of a Microbiome Therapeutic for Clostridioides difficile Infection: Lessons for the Future

Young, V. B. (2020) · Clinical Infectious Diseases · doi:10.1093/cid/ciaa476 · Cited by 5

Maternal Intake of Dietary Fat Pre‐Programs Offspring's Gut Ecosystem Altering Colonization Resistance and Immunity to Infectious Colitis in Mice

Quin, C., Ghosh, S., Dai, C., Barnett, J. A., Garner, A. M., Yoo, R. K. H., Zandberg, W. F., Botta, A. M., Gorzelak, M. A., & Gibson, D. L. (2021) · Molecular Nutrition & Food Research · doi:10.1002/mnfr.202000635 · Cited by 5

Successional Stages in Infant Gut Microbiota MaturationPreprint

Beller, L., Deboutte, W., Falony, G., Vieira‐Silva, S., Tito, R. Y., Valles‐Colomer, M., Rymenans, L., Jansen, D., Espen, L. V., Papadaki, M. I., et al. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.06.25.450009 · Cited by 5

Odoribacter splanchnicus mitigates pathogen - induced gut inflammation and its associated pathogenesis via its secreted bacteriocinPreprint

Hajra, D., Mukherjee, D., Vij, R., Rajmani, R. S., Dadireddy, V., Das, D., Hussain, T., Ganji, M., Tatu, U. S., & Chakravortty, D. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.08.23.609322 · Cited by 5

Evaluation of probiotics efficiency for the prevention of Clostridioides difficile infection in hospitalized patients: a systematic review and meta-analysis

Almutawif, Y. A., Najim, M. A., & Khan, N. U. (2025) · Infection · doi:10.1007/s15010-025-02580-2 · Cited by 4

Yeast nucleotide enhances barrier function by regulating the intestinal microbiota and metabolic pathways of fish to alleviate virus-induced intestinal damage

Shi, Y., Zhang, Q., Cheng, G., Zhang, Y., Yang, P., Cai, C., Gong, F., Yi, J., Zhang, Q., Kong, W., et al. (2025) · Marine Life Science & Technology · doi:10.1007/s42995-025-00330-9 · Cited by 4

Gut microbiota–derived tryptophan metabolites: molecular mechanisms, nutritional strategies and implications for swine health

Wen, Y. (2026) · Frontiers in Veterinary Science · doi:10.3389/fvets.2026.1807477 · Cited by 5

Gut Microbial Composition and Antibiotic Resistance Profiles in Dairy Calves with Diarrhea

Zhang, L., Bai, J., Guo, Q., Long, L., Jia, Y., Qiu, X., Zhou, D., Zhang, Z., & Niu, H. (2024) · Life · doi:10.3390/life15010010 · Cited by 4

Annual cycle variations in the gut microbiota of migratory black-necked cranes

Zhang, Y., Ma, R., Suolangduoerji, Ma, S., Nuertai, A., He, K., Liu, H., & Zhu, Y. (2025) · Frontiers in Microbiology · doi:10.3389/fmicb.2025.1533282 · Cited by 5

Context-dependent change in the fitness effect of (in)organic phosphate antiporter glpT during Salmonella Typhimurium infection

de Souza, N. S., Cherrak, Y., Andersen, T. B., Vetsch, M., Barthel, M., Kroon, S., Bakkeren, E., Schubert, C., Christen, P., Kiefer, P., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-56851-5 · Cited by 6

Akkermansia muciniphila ameliorates Salmonella-induced colitis and intestinal fibrosis

Suwandi, A., Ocvirk, S., Galeev, A., Basic, M., Naderi, R. R. A., Tientcheu, D., Sander, A., Ring, C., Ring, D., Nishanth, G., et al. (2025) · Mucosal Immunology · doi:10.1016/j.mucimm.2025.09.005 · Cited by 5

Structural characterization of almond polysaccharides (Armeniaca Sibirica L. Lam) and the prebiotic effects on human intestinal flora

Peng, Y., Wu, J., Ma, M., Pi, Y., Yue, X., & Peng, Y. (2025) · Food Chemistry · doi:10.1016/j.foodchem.2025.146831 · Cited by 4

Neuroimmune interactions in inflammatory bowel disease: Role of intestinal macrophages and the cholinergic pathway

Zheng, L., & Duan, S.-L. (2025) · World Journal of Gastroenterology · doi:10.3748/wjg.v31.i44.109440 · Cited by 4

Paneth cells as orchestrators of epithelial barrier defense and emerging therapeutic targets in inflammatory bowel disease

Erkert, L., Haag, L.-M., & Becker, C. (2026) · Seminars in Immunopathology · doi:10.1007/s00281-026-01068-x · Cited by 5

What’s metal got to do with it? Transition metals in Clostridioides difficile infection

Gomez, S. Y., Patel, J., & Lopez, C. A. (2021) · Current Opinion in Microbiology · doi:10.1016/j.mib.2021.11.004 · Cited by 4

Cultivation-based characterization of biliary microbiota in bile samples collected during routine endoscopic retrograde cholangiography: 10 years of experience at a tertiary center

Forster, K., Klein, F., Simon, N., Chhatwal, P., Ziesing, S., Heidrich, B., & Solbach, P. (2023) · European Journal of Gastroenterology & Hepatology · doi:10.1097/meg.0000000000002633 · Cited by 4

Commensal Bacteria Impact on Intestinal Toll-like Receptor Signaling in Salmonella-Challenged Gnotobiotic Piglets

Šplı́chalová, A., Kindlova, Z., Killer, J., Bunešová, V., Vlková, E., Valaskova, B., Pechar, R., Poláková, K., & Šplı́chal, I. (2023) · Pathogens · doi:10.3390/pathogens12111293 · Cited by 4

Travel to the tropics: Impact on gut microbiota

Mlangeni, T., Jian, C., Häkkinen, H. K., de Vos, W. M., Salonen, A., & Kantele, A. (2025) · Travel Medicine and Infectious Disease · doi:10.1016/j.tmaid.2025.102869 · Cited by 5

Interactions of Pathogenic Escherichia coli with Gut Microbiota

Miliwebsky, E. S., Jure, M. Á., Farfán, M. J., & Palermo, M. S. (2023) · Springer eBooks · doi:10.1007/978-3-031-29882-0_12 · Cited by 4

Exploring the impact of breast cancer on colonization resistance of mouse microbiota using network node manipulation

Chuang, A. W., Mateos‐Hernández, L., Abuin‐Denis, L., Maître, A., Avellanet, J., García, A., Fuentes, D., & Cabezas‐Cruz, A. (2024) · Heliyon · doi:10.1016/j.heliyon.2024.e30914 · Cited by 4

Gut microbiota: Implications on human health and diseases

Farooqui, T. (2021) · Elsevier eBooks · doi:10.1016/b978-0-12-821039-0.00009-5 · Cited by 4

Inhibition of Quinolone- and Multi-Drug-Resistant Clostridioides Difficile Strains by Multi Strain Synbiotics—An Option for Diarrhea Management in Nursing Facilities

Sommermeyer, H., Pituch, H. M., Wultańska, D., Wojtyła-Buciora, P., Piątek, J., & Bernatek, M. (2021) · International Journal of Environmental Research and Public Health · doi:10.3390/ijerph18115871 · Cited by 4

Contribution of Symptomatic, Herbal Treatment Options to Antibiotic Stewardship and Microbiotic HealthPreprint

Nausch, B., Bittner, C. B., Höller, M., Abramov-Sommariva, D., Hiergeist, A., & Gessner, A. (2022) · Preprints.org · doi:10.20944/preprints202209.0021.v1 · Cited by 4

Microbiota Analysis and Characterisation of the Novel Limosilactobacillus Strains Isolated from Dogs

Lee, G.-Y., Jo, H.-Y., Abbas, M. A., Gui, L., Ali, M. S., Kim, S., & Park, S. (2025) · Microorganisms · doi:10.3390/microorganisms13051059 · Cited by 3

Microbiome and metabolome changes after fecal microbiota, live-jslm, administration are associated with health-related quality of life improvements

Mishra, R., Harvey, A., Guo, A. X., Tillotson, G., Feuerstadt, P., Khanna, S., Shannon, W. D., & Blount, K. (2025) · Anaerobe · doi:10.1016/j.anaerobe.2025.103006 · Cited by 3

Impact of carbapenem-resistant Klebsiella pneumoniae infection on gut microbiota and host immunity: a case-control study

Ding, W., Ling, Z., Liu, X., Zhang, J., Cheng, Y., Zhu, Z., Wu, L., Xu, X., Gao, Y., & Hu, X. (2025) · Microbiology Spectrum · doi:10.1128/spectrum.02975-25 · Cited by 3

Advances in Functional Foods: Using Double Emulsion Gels to Deliver CBD and Probiotics and to Modulate Human Gut Microbial Communities

Jeznienė, S., Jasutienė, I., Keršienė, M., Bandariavičiūtė, R., Varnaitė-Kapočė, L., Bartkuvienė, I., Budrienė, V. A., Jonusas, A., Leskauskaitė, D., & Šipailienė, A. (2026) · Nutrients · doi:10.3390/nu18030367 · Cited by 3

The gut microbiota in Salmonella Typhi infection and translocation: Mechanisms of colonization resistance, pathogen subversion, and prospects for microecological intervention

Ma, C., Zou, Z., Zhao, W., Rao, Y., Liu, B., Sun, M., & Chen, D. (2026) · Microbial Pathogenesis · doi:10.1016/j.micpath.2026.108381 · Cited by 5

Recent progress in metal-based drugs for colorectal cancer therapy

Liu, X., Zhang, Q., Yang, X., Liang, J., He, Y., Chao, H., & Pan, Y. (2026) · Coordination Chemistry Reviews · doi:10.1016/j.ccr.2026.217971 · Cited by 3

Gut microbiota in health and disease

Li, Y. N., Xiao, X., Jiang, X., Li, X., WANG, W., & Lin, R. (2026) · Molecular Biomedicine · doi:10.1186/s43556-026-00512-6 · Cited by 6

Engineered microbe-based micro/nanorobots for interventional therapy of luminal cancers

Wang, L., Du, T., Ran, N., Kang, Y., & Ji, X. (2026) · Medicine Plus · doi:10.1016/j.medp.2026.100156 · Cited by 4

One size does not fit all – Trehalose metabolism by Clostridioides difficile is variable across the five phylogenetic lineages

Marshall, A., McGrath, J. W., Mitchell, M., Fanning, S., & McMullan, G. (2023) · Microbial Genomics · doi:10.1099/mgen.0.001110 · Cited by 4

Retrospective subgroup analysis of fecal microbiota, live-jslm (REBYOTA ® ) administered by colonoscopy under enforcement discretion for the prevention of recurrent Clostridioides difficile infection

Knapple, W., Yoho, D. S., Sheh, A., Thul, J., & Feuerstadt, P. (2024) · Therapeutic Advances in Gastroenterology · doi:10.1177/17562848241239547 · Cited by 3

Infection of mice by the enteroaggregative E. coli strain 042 and two mutant derivatives overexpressing virulence factors: impact on disease markers, gut microbiota and concentration of SCFAs in feces

Bernabeu, M., Prieto, A., Salguero, D., Miró, L., Cabrera‐Rubio, R., Collado, M. C., Hüttener, M., Pérez‐Bosque, A., & Juárez, A. (2024) · Scientific Reports · doi:10.1038/s41598-024-67731-1 · Cited by 3

Microbiome-Based Formulations and Products and Their Therapeutic Implications

Sabir, M., Khan, K. A., Haider, I., Nisa, S., Shah, W. H., Sawar, S., & Saleem, A. (2024) · Springer eBooks · doi:10.1007/978-981-97-3790-1_17 · Cited by 3

Bifidobacterial biofilms as next-generation probiotics and their role in intestinal microbiocenosis

Aziz, K., & Zaidi, A. (2024) · Critical Reviews in Microbiology · doi:10.1080/1040841x.2024.2438119 · Cited by 3

Long-term use of broad-spectrum antibiotics affects Ly6Chi monocyte recruitment and IL-17A and IL-22 production through the gut microbiota in tumor-bearing mice treated with chemotherapy

Wu, Y., Xiaolei, T., Hu, F., Zhu, T., Liu, H., Xiong, Y., Zuo, X., Xu, A., & Zhuang, X. (2022) · Immunologic Research · doi:10.1007/s12026-022-09313-9 · Cited by 3

Flaxseed Supplementation in Chicken Feed Accelerates Salmonella enterica subsp. enterica Serovar Enteritidis Clearance, Modulates Cecum Microbiota, and Influences Ovarian Gene Expression in Laying Hens

De, W., Ma, B., Liao, Z., Li, W., Zhang, T., Lei, C., & Wang, H. (2023) · Biomolecules · doi:10.3390/biom13091353 · Cited by 3

Inhibition effect of aerobic respiratory Lactococcus lactis on Salmonella enterica subsp. enterica serovar Typhimurium SL 1344 and its intestinal colonization ability

Zhang, Y., Zheng, S., Chen, J., Cheng, Z., Liu, F., & Jiao, Y. (2024) · LWT · doi:10.1016/j.lwt.2024.116102 · Cited by 3

Differential analysis of serum immunology and gut microbiota in patients with gastrointestinal diseases

Chen, H., Zeng, Y., Cai, G. X., Gu, W., & Yang, Y. (2024) · Frontiers in Microbiology · doi:10.3389/fmicb.2024.1323842 · Cited by 3

Gut microbes regroup to aid defence after infection

Kendall, M. M., & Sperandio, V. (2021) · Nature · doi:10.1038/d41586-021-00642-7 · Cited by 3

Clindamycin-resistant Clostridioides difficile: a challenge in dentistry

Bernatek, M., Sommermeyer, H., Pituch, H. M., Wultańska, D., Kopczyński, Z., Piątek, J., & Wojtyła-Buciora, P. (2022) · Journal of Health Inequalities · doi:10.5114/jhi.2022.117343 · Cited by 3

Jekyll and Hyde: Bugs with Double Personalities that Muddle the Distinction between Commensal and Pathogen

Brannon, J. R., & Mulvey, M. A. (2019) · Journal of Molecular Biology · doi:10.1016/j.jmb.2019.06.014 · Cited by 3

Alterations in human gut microbiome composition and metabolism after exposure to glyphosate and Roundup and/or a spore-based formulation using the SHIME® technologyPreprint

Mesnage, R., Calatayud, M., Duysburgh, C., Marzorati, M., & Antoniou, M. N. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.12.16.472928 · Cited by 3

Clustering Disease of Clostridioides Difficile Infection: Implication for the Management in Internal Medicine

Crispino, P. (2023) · Microbiology Research · doi:10.3390/microbiolres14030094 · Cited by 2

Metagenomic and Metabolomic Analyses Reveal the Role of a Bacteriocin-Producing Strain of Enterococcus faecalis DH9003 in Regulating Gut Microbiota in Mice

Fu, Z., Zhang, H., Yang, Z., Liu, Y., Wang, P., Zhang, J., & Chi, H. (2025) · Microorganisms · doi:10.3390/microorganisms13020372 · Cited by 3

The Two-Component System TtrRS Regulates the Expression of the 05890–05900 Operon that Promotes the Sulfur Metabolism of Vibrio parahaemolyticus

Bai, Y., Liang, T., Zhao, J., Lin, Y., Lu, Q., Zhou, X., Yang, M., & Zhong, X. (2025) · Current Microbiology · doi:10.1007/s00284-025-04115-2 · Cited by 2

The Value of Fecal Calprotectin Combined with Procalcitonin in the Differential Diagnosis of Bacterial and Viral Diarrhea in Children

Guo, Q., Guo, H., & Xu, X. (2025) · American Journal of Tropical Medicine and Hygiene · doi:10.4269/ajtmh.24-0458 · Cited by 2

Music exposure enhances resistance to Salmonella infection by promoting healthy gut microbiota

Zhu, C. Y., Byun, H., Do, E. A., Zhang, Y., Tanchoco, E., Beld, J., Hsiao, A., & Zhu, J. (2025) · Microbiology Spectrum · doi:10.1128/spectrum.02377-24 · Cited by 2

Decreased Antimicrobial Resistance Gene Richness Following Fecal Microbiota, Live-jslm (REBYOTA®) Administration: Post Hoc Analysis of PUNCH CD3

Adamowicz, E. M., Kraft, C. S., Ward, T., Mehta, N., Shannon, W. D., Mishra, R., & Blount, K. (2025) · Open Forum Infectious Diseases · doi:10.1093/ofid/ofaf382 · Cited by 2

Advanced electrochemical and sensor technologies in gastroenterology: Applications of EIS, organ-on-a-chip, and ingestible/wearable devices in chronic disease diagnosis and monitoring

Hu, W., & Lv, X. (2025) · International Journal of Electrochemical Science · doi:10.1016/j.ijoes.2025.101178 · Cited by 2

Gut Microbiota—Campylobacter jejuni Crosstalk in Broiler Chickens: A Comprehensive Review

Dessalegn, B., Debelo, M., Heß, M., & Awad, W. A. (2025) · Poultry · doi:10.3390/poultry4040044 · Cited by 2

Gut commensal Bifidobacterium longum confers resistance to Salmonella Typhimurium and Shigella flexneri in a Caenorhabditis elegans model

Harnvoravongchai, P., Mattiello, S. P., Amabat, A., Jusail, C. P., Faisal, S. M., Kaushik, R. S., & Scaria, J. (2025) · Microbiology Spectrum · doi:10.1128/spectrum.01842-25 · Cited by 2

The Gut Microbiota–Mast Cell Axis in Intestinal Homeostasis and Food Allergy Pathogenesis

Carnevale, A., Marangio, C., Putro, E., Molfetta, R., & Paolini, R. (2026) · Biomolecules · doi:10.3390/biom16020254 · Cited by 2

Self-replenishing metabolically enhanced probiotic delivery strategy to alleviate ulcerative colitis through intestinal homeostasis remodeling and aryl hydrocarbon receptor signaling activation

Sun, R., Chen, J., Fan, J., Wang, Y., Wang, X., Liu, Y., Wang, Z., Yue, T., & Yuan, Y. (2026) · Chemical Engineering Journal · doi:10.1016/j.cej.2026.174368 · Cited by 2

Strain-specific effects of infant-derived Bifidobacterium on gut microbiota modulation and mucus barrier responses in Salmonella infection

Zhao, X., Mahsa, G. C., Xiao, L., Fan, X., Jiang, W., Jia, X., Ma, K., Zhang, C., Geng, S., Ji, F., et al. (2026) · Food Bioscience · doi:10.1016/j.fbio.2026.108631 · Cited by 2

Divergent mechanistic pathways of diarrheagenic bacterial infections at the host-microbiota interface: a review

Bayode, M. T., Olawale, O. E., & Olusola-Makinde, O. (2026) · Archives of Microbiology · doi:10.1007/s00203-026-04906-6 · Cited by 2

Resident microbes shape host immunity and protect against pathogen infection and inflammatory disease

Mori, D., & Goto, Y. (2026) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-026-06219-9 · Cited by 3

Cutibacterium acnes inhibits Staphylococcus lugdunensis biofilm formation through inhibition of autolysis and purine biosynthesis

Lima, R. D., Bauer, O. R., Pauer, H., Hajiarbabi, K., Moreira, D. A., Parente, T. T. E., & Ferreira, R. B. R. (2026) · npj Biofilms and Microbiomes · doi:10.1038/s41522-026-01014-7 · Cited by 2

The role of the gut microbiome in antibiotic-driven antimicrobial resistance

Joshi, G., Rani, S., Bharti, D., Panda, N., Chavan, P., Mathpal, S., Ramaiah, S., & Anbarasu, A. (2026) · Frontiers in Microbiology · doi:10.3389/fmicb.2026.1856738 · Cited by 3

Gut barrier-microbiota crosstalk in sepsis: from pathogenesis to potential therapies

Meng, L., Liu, Y., Wang, N., Li, T., Wang, Y., & Li, M. (2026) · Frontiers in Immunology · doi:10.3389/fimmu.2026.1865498 · Cited by 2

Current Drug Targets for Gut Microbiota Biocorrection during the SARS-CoV-2 Pandemic: A Systematic Review

Sinelnikov, M. Y., Sankova, M. V., Nikolenko, V. N., Oganesyan, M. V., Bakhmet, А. А., Gavryushova, L. V., & Sankov, S. V. (2022) · Current Drug Targets · doi:10.2174/1389450123666220418094853 · Cited by 2

[Intestinal and pharyngeal microbiota in early neonates: an analysis based on high-throughput sequencing].

Wang, X., Shao, Z.-Y., Zhu, M.-R., You, M.-Y., Zhang, Y., & Chen, X.-Q. (2023) · PubMed Central · doi:10.7499/j.issn.1008-8830.2301015 · Cited by 2

Dynamics of Virulence of Commensals: Preventive Phenotypical Mutability

Chepur, S. V., Nn, P., Sayganov, S. A., Chubar, O. V., Сергеевна, Б. Л., & Litvinenko, I. (2023) · Biology Bulletin Reviews · doi:10.1134/s207908642306004x · Cited by 2

The Interplay between Mycobacterium tuberculosis and Human Microbiome

Nguyen, M., Ahn, P., Dawi, J., Gargaloyan, A., Kiriaki, A., Shou, T., Wu, K. C. ‐., Yazdan, K., & Venketaraman, V. (2024) · Clinics and Practice · doi:10.3390/clinpract14010017 · Cited by 4

Gut microbiota composition in travellers is associated with faecal lipocalin-2, a mediator of gut inflammation

Gandasegui, J., Vergara, A., Fleitas, P., Rubio-García, E., Fernández-Pittol, M., Aylagas, C., Alvarez, M., Zancada, N., Camprubí-Ferrer, D., Vilà, J., et al. (2024) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2024.1387126 · Cited by 2

The Roles of a Multidrug-Resistant Klebsiella pneumoniae High-Risk Clone and Its Resistance Plasmids on the Gastrointestinal Colonization and Host-Defense Effectors in the Gut

Stercz, B., Domokos, J., Dunai, Z. A., Makra, N., Juhász, J., Ostorházi, E., Kocsis, B., & Szabó, D. (2024) · Antibiotics · doi:10.3390/antibiotics13080698 · Cited by 2

Multi-omics analyses of Bacillus amyloliquefaciens treated mice infected with Schistosoma japonicum reveal dynamics change of intestinal microbiome and its associations with host metabolism

Chen, H., Huang, S., Yao, S., Wang, J., Huang, J., & Yu, Z. (2024) · PLoS neglected tropical diseases · doi:10.1371/journal.pntd.0012583 · Cited by 2

Characterisation of Aequorivita ciconiae sp. nov., isolated from oriental stork, Ciconia boyciana

Han, J., Kang, S., Lee, S.-Y., & Bae, J. (2024) · Antonie van Leeuwenhoek · doi:10.1007/s10482-024-02056-7 · Cited by 2

Antimicrobial activity of selected native Australian Terminalia spp. against gastrointestinal pathogens and potentiation of selected antibiotics

Zai, M. J. Y., Cheesman, M. J., & Cock, I. E. (2025) · Pharmacological Research - Natural Products · doi:10.1016/j.prenap.2025.100158 · Cited by 2

Probiotics and Synbiotics Administered to Young Infants: Perceptions and Acceptability Amongst Carers and Healthcare Workers in Western Kenya

Otiti, M. I., Were, F., Zaim, S., Nabwera, H., Kariuki, S., & Allen, S. J. (2025) · Nutrients · doi:10.3390/nu17030495 · Cited by 2

The phoQ gene of Pseudomonas plecoglossicida influences the immune response in Epinephelus fuscoguttatus ♀ × Epinephelus lanceolatus ♂ during infection

Mao, M., Li, H., Lin, X., Wu, J., Zhuang, Z., Wang, X., Huang, H., & Yan, Q. (2025) · Aquaculture Reports · doi:10.1016/j.aqrep.2025.102896 · Cited by 2

Temporal changes in fecal swine microbiome primarily reflect Salmonella Typhimurium challenge and poor sanitary housing conditions, even with functional amino acid supplementation

Melo, A. D. B., Valini, G. A. D. C., Yang, Q., de Oliveira, M. J. K., Marçal, D. A., Arnaut, P. R., França, I., Silva, C. A., Korth, N., Pavlovikj, N., et al. (2025) · Frontiers in Veterinary Science · doi:10.3389/fvets.2025.1597857 · Cited by 2

CAMPYLOBACTER: A BRIEF REVIEW OF ITS CAUSES, DIAGNOSTIC APPROACHES AND PREVENTION

(2022) · National Journal of Biological Sciences · doi:10.37605/v3i2/4 · Cited by 2

Plasma carnitine, choline, γ-butyrobetaine, and trimethylamine-N-oxide, but not zonulin, are reduced in overweight/obese patients with pre/diabetes or impaired glycemia

Snouper, A., Kasabri, V. N., Bulatova, N., Suyagh, M. F., Sadder, M. T., Shnewer, K., & Yousef, I. (2022) · International Journal of Diabetes in Developing Countries · doi:10.1007/s13410-022-01088-x · Cited by 3

The Role of Nutrients and Nutritional Signals in the Pathogenesis of Vibrio cholerae

McDonald, N. D., Rosenberger, J. R., Almagro‐Moreno, S., & Boyd, E. F. (2023) · Advances in experimental medicine and biology · doi:10.1007/978-3-031-22997-8_10 · Cited by 2

Characterization of phenyl propiolic acid from Proteus mirabilis DMTMMR-11 and Evaluation of its mode of action against Yersinia enterocolitica (MTCC-840) an in-Vitro and in-Vivo based approach

Ravindran, D. R., Kannan, S., Jeyakumar, D., & Murugan, M. (2023) · Microbial Pathogenesis · doi:10.1016/j.micpath.2023.106258 · Cited by 2

The Importance of the Microbiome in the Gut

Morrison, M., Murtaza, N., & Talley, N. J. (2023) · Springer eBooks · doi:10.1007/978-3-031-46712-7_1 · Cited by 2

Colonization resistance: the role of gut microbiota in preventing Salmonella invasion and infection

Deng, L., & Wang, S. (2024) · Gut Microbes · doi:10.1080/19490976.2024.2424914 · Cited by 76

Mechanisms controlling pathogen colonization of the gut

Stecher, B., & Hardt, W. (2010) · Current Opinion in Microbiology · doi:10.1016/j.mib.2010.10.003 · Cited by 431

Gut microbial ecosystem and colonization resistance

Su-yun, C. (2012) · Zhongguo weishengtaixue zazhi · Cited by 1

Mechanism of the Gut Microbiota Colonization Resistance and Enteric Pathogen Infection

Khan, I., Bai, Y., Zha, L., Ullah, N., Ullah, H., Shah, S. R. H., Sun, H., & Zhang, C. (2021) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2021.716299 · Cited by 291

The gut microbiota and host immunity synergistically orchestrate colonization resistance

Li, N., & Guo, X. (2026) · Gut Microbes · doi:10.1080/19490976.2025.2611545 · Cited by 26