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Total Lipopolysaccharide from the Human Gut Microbiome Silences Toll-Like Receptor Signaling
Open accessAbstract
While the ability for humans to host a complex microbial ecosystem is an essential property of life, the mechanisms allowing for immune tolerance of such a large microbial load are not completely understood and are currently the focus of intense research. This study shows that an important proinflammatory pathway that is commonly triggered by pathogenic bacteria upon interaction with the host is, in fact, actively repressed by the bacteria of the gut microbiome, supporting the idea that beneficial microbes themselves contribute to the immune tolerance in support of homeostasis. These findings are important for two reasons. First, many currently assume that proinflammatory signaling by lipopolysaccharide is a fundamental feature of the gut flora. This assumption influences greatly how host-microbiome interactions are theoretically modeled but also how they are experimentally studied, by using robust TLR signaling conditions to simulate commensals. Second, elucidation of the mechanisms that support host-microbe tolerance is key to the development of therapeutics for both intestinal and systemic inflammatory disorders.
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“In the gut, LPS-TLR4 signalling has been shown to both dampen intestinal immune responses to the resident microbiota during states of health5”
From Gut microbiota-derived hexa-acylated lipopolysaccharides enhance cancer immunotherapy responses (2025) · cites this paper as [5]
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Cites
Fast gapped-read alignment with Bowtie 2
Langmead, B., & Salzberg, S. L. (2012) · Nature Methods · doi:10.1038/nmeth.1923 · Cited by 56,400
Fast and sensitive protein alignment using DIAMOND
Buchfink, B., Xie, C., & Huson, D. H. (2015) · Nature Methods · doi:10.1038/nmeth.3176 · Cited by 14,201
Structure, function and diversity of the healthy human microbiome
The Human Microbiome Project Consortium (2012) · Nature · doi:10.1038/nature11234 · Cited by 11,726
A human gut microbial gene catalogue established by metagenomic sequencing
MetaHIT Consortium, Qin, J., Li, R., Raes, J., Arumugam, M., Burgdorf, K. S., Manichanh, C., Nielsen, T., Pons, N., Levenez, F., et al. (2010) · Nature · doi:10.1038/nature08821 · Cited by 11,624
Diversity of the Human Intestinal Microbial Flora
Eckburg, P. B., Bik, E. M., Bernstein, C. N., Purdom, E., Dethlefsen, L., Sargent, M., Gill, S. R., Nelson, K. E., & Relman, D. A. (2005) · Science · doi:10.1126/science.1110591 · Cited by 7,913
Changes of Intestinal Functions in Liver Cirrhosis
Fukui, H., & Wiest, R. (2016) · Inflammatory Intestinal Diseases · doi:10.1159/000444436 · Cited by 6,820
Biofilms: Survival Mechanisms of Clinically Relevant Microorganisms
Donlan, R. M., & Costerton, J. W. (2002) · Clinical Microbiology Reviews · doi:10.1128/cmr.15.2.167-193.2002 · Cited by 6,644
Metabolic Endotoxemia Initiates Obesity and Insulin Resistance
Cani, P. D., Amar, J., Iglesias, M. A., Poggi, M., Knauf, C., Bastelica, D., Neyrinck, A. M., Fava, F., Tuohy, K. M., Chabo, C., et al. (2007) · Diabetes · doi:10.2337/db06-1491 · Cited by 6,638
Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells
Furusawa, Y., Obata, Y., Fukuda, S., Endo, T. A., Nakato, G., Takahashi, D., Nakanishi, Y., Uetake, C., Kato, K., Kato, T., et al. (2013) · Nature · doi:10.1038/nature12721 · Cited by 5,549
The gut microbiota shapes intestinal immune responses during health and disease
Round, J. L., & Mazmanian, S. K. (2009) · Nature Reviews Immunology · doi:10.1038/nri2515 · Cited by 5,029
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Additional file 4 of Gut microbiome signatures linked to HIV-1 reservoir size and viremia control
Borgognone, A., Noguera-Julián, M., Oriol-Tordera, B., Noël‐Romas, L., Ruiz‐Riol, M., Guillén, Y., Parera, M., Casadellà, M., Duran-Castells, C., Puertas, M. C., et al. (2022) · Figshare · doi:10.6084/m9.figshare.19581801
Wang, Z., Ojogun, N., Liu, Y., Gan, L., Xiao, Z., Feng, J., Jiang, W., Chen, Y., Zou, B., Yu, C., et al. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.06.23.600304
Akorli, J., Opoku, M., Appiah-Twum, F., Akpo, M. S., Ismail, R. B. Y., Boamah, G. Y. K., Obeng-Aboagye, E., Adu-Asamoah, D., & Donkor, I. O. (2024) · BMC Infectious Diseases · doi:10.1186/s12879-024-09948-z
Wang, Z., Ojogun, N., Liu, Y., Gan, L., Xiao, Z., Feng, J., Jiang, W., Chen, Y., Zou, B., Yu, C., et al. (2025) · eLife · doi:10.7554/elife.100731.2
Additional file 2 of Gut microbiome signatures linked to HIV-1 reservoir size and viremia control
Borgognone, A., Noguera-Julián, M., Oriol-Tordera, B., Noël‐Romas, L., Ruiz‐Riol, M., Guillén, Y., Parera, M., Casadellà, M., Duran-Castells, C., Puertas, M. C., et al. (2022) · Figshare · doi:10.6084/m9.figshare.19581792
Purcell, R. V., Permain, J., & Keenan, J. I. (2022) · Figshare · doi:10.6084/m9.figshare.19654291
Khomich, M., Lin, H., Malinovschi, A., Brix, S., Cestelli, L., Peddada, S., Johannessen, A., Eriksen, C., Real, F. G., Svanes, C., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26592539
Purcell, R. V., Permain, J., & Keenan, J. I. (2022) · Figshare · doi:10.6084/m9.figshare.19654294
李, 彦. (2026) · Advances in Clinical Medicine · doi:10.12677/acm.2026.163877
Dothard, M. I., Caboni, M., Norment, D., Sigmund, N., Allard, S. M., Gilbert, J. A., Gavrish, E., Al‐Ghalith, G. A., Der‐Avakian, A., & Strandwitz, P. (2026) · BMC Medicine · doi:10.1186/s12916-026-04787-y
Lemaire, M. (2018) · theses.fr (ABES) · doi:10.70675/d4a3481fzc7f5z40b0zba41z08905cdd9ce8 · Cited by 1
Regulated activity of a bacterial transenvelope machinery : the LPS Transport System
Baeta, T. (2020) · theses.fr (ABES) · doi:10.70675/431a4791z1d6cz4edfzb31azd846ac39cb40
Zouiouich, S. (2021) · theses.fr (ABES) · doi:10.70675/dccac4fez891dz478eza9f4zd925044d3025
Phosphoethanolamine modification of lipid A found in five distinct Akkermansia species
Crenna, S. P., Lagoudakis, A., Jackson, A., Weke, K., Tiegs, G., Goodlett, D. R., Davey, L. E., & Pětrošová, H. (2026) · Microbiology Spectrum · doi:10.1128/spectrum.00682-26
Targeted genomic editing of human gut Bacteroides species based on CRISPR-associated transposases
Hu, Y., Li, Q., Li, Y., Zeng, Y., Zheng, L., Shen, J., Gao, X., Zhao, G.-P., Zhao, W., & Dai, L. (2026) · Cell Systems · doi:10.1016/j.cels.2026.101650
Yi, H., He, W., Ma, Z., Qiu, X., 任丽华, & Liang, X. (2026) · Frontiers in Microbiology · doi:10.3389/fmicb.2026.1880194
Metabolic endotoxemia in metabolic and neurodegenerative diseases
Li, C., Jiang, W., & Lu, M. (2026) · Acta Biochimica et Biophysica Sinica · doi:10.3724/abbs.2026130
Pei, Y., Lin, Z., Lei, X., Yan, J., Yu, H., & 廖湘勇 (2026) · Food Bioscience · doi:10.1016/j.fbio.2026.109638
Salmonella lipopolysaccharide stimulates uptake of long-chain fatty acids in the small intestine
Koo, E., Quinn, G. M., Behrendt, C. L., Hassell, B., Kang, K. N., Ruhn, K. A., do Vale, G. D., McDonald, J. G., Zhu, W., Winter, S., et al. (2026) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2618255123
Korobeinikova, T. V., Skalny, A. V., Aliyev, A. F., Remizova, N. I., Morozova, G. D., Ternovoy, K. S., Kovalenko, A. A., Aschner, M., Zhang, F., Plotnikov, A. O., et al. (2026) · Biological Trace Element Research · doi:10.1007/s12011-026-05331-y
Huang, K., Liang, G., Jiang, L., 智, 庆., Fang, B., Wu, M., Chen, X., & Huang, H. (2026) · Future Microbiology · doi:10.1080/17460913.2026.2720339
IL-1α protects intestinal barrier in murine visceral leishmaniasis
Sacramento, L. A., Sampaio, P. A., Martins, G. C., Benevides, L., Lombana, C., Trindade, G. B., Mello, M., Cunha, F. Q., Zaramela, L. S., Silva, J. S., et al. (2026) · mBio · doi:10.1128/mbio.00657-26
Metadata
- Authors
- d’Hennezel, E., Abubucker, S., Murphy, L. O., & Cullen, T. W.
- Affiliations
- Developmental and Molecular Pathways, Novartis Institutes for Biomedical Research Inc., Cambridge, Massachusetts, USA
- Corresponding author
- Cullen, Thomas W.
- ORCID
- Abubucker, Sahar
- Venue
- mSystems
- Publisher
- American Society for Microbiology
- Published
- 2017-12-26
- Volume
- 2
- Issue
- 6
- ISSN
- 2379-5077 (ISSN-L)
- PMC
- PMC5686520
- OpenAlex
- W2770311021
- Cited by
- 324
- References
- 44
- Citations by year
- 2026: 21 · 2025: 32 · 2024: 43 · 2023: 43 · 2022: 49 · 2021: 62 · 2020: 37 · 2019: 27 · 2018: 8 · 2017: 1
- FWCI
- 9.03
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- mSystems (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- Broad Institute
- Topics
- Life Sciences › Immunology and Microbiology › Immunology › Immune Response and Inflammation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Health Sciences › Dentistry › Periodontics › Oral microbiology and periodontitis research
- Keywords
- gut microbiota, lipopolysaccharide, Toll-like receptor signaling, immune tolerance, host-microbe interactions, commensal bacteria, pro-inflammatory signaling, intestinal homeostasis, inflammatory diseases
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