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Miniature inverted-repeat transposable elements: discovery, distribution, and activity

Fattash, Isam, Rooke, Rebecca, Wong, Amy, Hui, Caleb, Luu, Tina, Bhardwaj, Priyanka, Yang, Guojun·2013·Genome
DOI 10.1139/gen-2012-0174
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Abstract

Eukaryotic organisms have dynamic genomes, with transposable elements (TEs) as a major contributing factor. Although the large autonomous TEs can significantly shape genomic structures during evolution, genomes often harbor more miniature nonautonomous TEs that can infest genomic niches where large TEs are rare. In spite of their cut-and-paste transposition mechanisms that do not inherently favor copy number increase, miniature inverted-repeat transposable elements (MITEs) are abundant in eukaryotic genomes and exist in high copy numbers. Based on the large number of MITE families revealed in previous studies, accurate annotation of MITEs, particularly in newly sequenced genomes, will identify more genomes highly rich in these elements. Novel families identified from these analyses, together with the currently known families, will further deepen our understanding of the origins, transposase sources, and dramatic amplification of these elements.

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Metadata

Authors
Fattash, I., Rooke, R., Wong, A., Hui, C., Luu, T., Bhardwaj, P., & Yang, G.
Affiliations
  • Department of Biology, University of Toronto at Mississauga, 3359 Mississauga Road, Mississauga, ON L5L 1C6, Canada.
  • Department of Cell & Systems Biology, University of Toronto, 25 Harbord Street, Toronto, ON M5S 3G5, Canada.
  • Department of Chemical & Physical Sciences, University of Toronto at Mississauga, 3359 Mississauga Road, Mississauga, ON L5L 1C6, Canada.
Venue
Genome
Publisher
Canadian Science Publishing
Published
2013-09
Volume
56
Issue
9
Pages
475-486
ISSN
  • 0831-2796
  • 1480-3321
DOI
10.1139/gen-2012-0174
Cited by
99
References
8
Language
en
Licence
www.nrcresearchpress.com/page/about/CorporateTextAndDataMining (tdm)

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