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Microsatellite landscape evolutionary dynamics across 450 million years of vertebrate genome evolution

Adams, Richard H., Blackmon, Heath, Reyes-Velasco, Jacobo, Schield, Drew R., Card, Daren C., Andrew, Audra L., Waynewood, Nyimah, Castoe, Todd A.·2016·Genome

DOI 10.1139/gen-2015-0124

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Abstract

The evolutionary dynamics of simple sequence repeats (SSRs or microsatellites) across the vertebrate tree of life remain largely undocumented and poorly understood. In this study, we analyzed patterns of genomic microsatellite abundance and evolution across 71 vertebrate genomes. The highest abundances of microsatellites exist in the genomes of ray-finned fishes, squamate reptiles, and mammals, while crocodilian, turtle, and avian genomes exhibit reduced microsatellite landscapes. We used comparative methods to infer evolutionary rates of change in microsatellite abundance across vertebrates and to highlight particular lineages that have experienced unusually high or low rates of change in genomic microsatellite abundance. Overall, most variation in microsatellite content, abundance, and evolutionary rate is observed among major lineages of reptiles, yet we found that several deeply divergent clades (i.e., squamate reptiles and mammals) contained relatively similar genomic microsatellite compositions. Archosauromorph reptiles (turtles, crocodilians, and birds) exhibit reduced genomic microsatellite content and the slowest rates of microsatellite evolution, in contrast to squamate reptile genomes that have among the highest rates of microsatellite evolution. Substantial branch-specific shifts in SSR content in primates, monotremes, rodents, snakes, and fish are also evident. Collectively, our results support multiple major shifts in microsatellite genomic landscapes among vertebrates.

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R: A Language and Environment for Statistical Computing
R Core Team (2025) · doi:10.32614/r.manuals · Cited by 352,181
MUSCLE: multiple sequence alignment with high accuracy and high throughput
Edgar, R. C. (2004) · Nucleic Acids Research · doi:10.1093/nar/gkh340 · Cited by 44,662
BEAST: Bayesian evolutionary analysis by sampling trees
Drummond, A. J., & Rambaut, A. (2007) · BMC Evolutionary Biology · doi:10.1186/1471-2148-7-214 · Cited by 12,919
APE: analyses of phylogenetics and evolution in R language
Paradis, E., Claude, J., & Strimmer, K. (2004) · Bioinformatics · doi:10.1093/bioinformatics/btg412 · Cited by 11,335
phytools: an R package for phylogenetic comparative biology (and other things)
Revell, L. J. (2012) · Methods in Ecology and Evolution · doi:10.1111/j.2041-210x.2011.00169.x · Cited by 9,277
PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses
Lanfear, R., Calcott, B., Ho, S. Y. W., & Guindon, S. (2012) · Molecular Biology and Evolution · doi:10.1093/molbev/mss020 · Cited by 5,732
A measure of population subdivision based on microsatellite allele frequencies.
Slatkin, M. (1995) · Genetics · doi:10.1093/genetics/139.1.457 · Cited by 3,617
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
International Chicken Genome Sequencing Consortium (2004) · Nature · doi:10.1038/nature03154 · Cited by 2,750
The impact of retrotransposons on human genome evolution
Cordaux, R., & Batzer, M. A. (2009) · Nature Reviews Genetics · doi:10.1038/nrg2640 · Cited by 1,791
A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes
Pyron, R., Burbrink, F. T., & Wiens, J. J. (2013) · BMC Evolutionary Biology · doi:10.1186/1471-2148-13-93 · Cited by 1,641
The Ensembl genome database project
Hubbard, T. (2002) · Nucleic Acids Research · doi:10.1093/nar/30.1.38 · Cited by 1,637
The evolutionary dynamics of repetitive DNA in eukaryotes
Charlesworth, B., Sniegowski, P., & Stephan, W. (1994) · Nature · doi:10.1038/371215a0 · Cited by 1,623
Microsatellites, from molecules to populations and back
Jarne, P., & Lagoda, P. (1996) · Trends in Ecology & Evolution · doi:10.1016/0169-5347(96)10049-5 · Cited by 1,561
Microsatellites in Different Eukaryotic Genomes: Survey and Analysis
Tóth, G., Gáspári, Z., & Jurka, J. (2000) · Genome Research · doi:10.1101/gr.10.7.967 · Cited by 1,485
Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review
Li, Y., Korol, A. B., Fahima, T., Beiles, A., & Nevo, E. (2002) · Molecular Ecology · doi:10.1046/j.1365-294x.2002.01643.x · Cited by 1,246
Repeat instability: mechanisms of dynamic mutations
Pearson, C. E., Edamura, K. N., & Cleary, J. D. (2005) · Nature Reviews Genetics · doi:10.1038/nrg1689 · Cited by 924 · cited 1×
“…have demonstrated microsatellite locus conservation across considerable scales of evolutionary time in specific lineages (FitzSimmons et al. 1995; Pepín et al. 1995; Rico et al. 1996; Schlotteröer et al. 1991), while other studies have noted substantial divergence in microsatellite content even…”
Background
Paleontological Evidence to Date the Tree of Life
Benton, M. J., & Donoghue, P. C. J. (2006) · Molecular Biology and Evolution · doi:10.1093/molbev/msl150 · Cited by 916
Evolutionary dynamics of microsatellite DNA
Schlötterer, C. (2000) · Chromosoma · doi:10.1007/s004120000089 · Cited by 818
Adaptive evolution of highly mutable loci in pathogenic bacteria
Moxon, E. R., Rainey, P. B., Nowak, M. A., & Lenski, R. E. (1994) · Current Biology · doi:10.1016/s0960-9822(00)00005-1 · Cited by 755
TESTING FOR DIFFERENT RATES OF CONTINUOUS TRAIT EVOLUTION USING LIKELIHOOD
O’Meara, B. C., Ané, C., Sanderson, M. J., & Wainwright, P. C. (2006) · Evolution · doi:10.1111/j.0014-3820.2006.tb01171.x · Cited by 714
Repeat instability : mechanisms of dynamic mutations
Pearson, C. E. (2005) · Medical Entomology and Zoology · Cited by 711
Genetics and Genomics of Core Short Tandem Repeat Loci Used in Human Identity Testing
Butler, J. M. (2006) · Journal of Forensic Sciences · doi:10.1111/j.1556-4029.2006.00046.x · Cited by 686
Animal Genome Size Database
Gregory, T. R. (2002) · Cited by 680
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
Bradnam, K. R., Fass, J., Alexandrov, A., Baranay, P., Bechner, M., Birol, İ., Boisvert, S., Chapman, J., Chapuis, G., Chikhi, R., et al. (2013) · GigaScience · doi:10.1186/2047-217x-2-10 · Cited by 658
The genome of the green anole lizard and a comparative analysis with birds and mammals
Alföldi, J., Di Palma, F., Grabherr, M., Williams, C., Kong, L., Mauceli, E., Russell, P., Lowe, C. B., Glor, R. E., Jaffe, J. D., et al. (2011) · Nature · doi:10.1038/nature10390 · Cited by 647
Self-citation
Microsatellites and their application to population genetic studies
Bruford, M. W., & Wayne, R. K. (1993) · Current Opinion in Genetics & Development · doi:10.1016/0959-437x(93)90017-j · Cited by 607
GenBank
Benson, D. A., Karsch‐Mizrachi, I., Clark, K., Lipman, D. J., Ostell, J., & Sayers, E. W. (2011) · Nucleic Acids Research · doi:10.1093/nar/gkr1202 · Cited by 589
Survey of human and rat microsatellites
Beckmann, J. S., & Weber, J. L. (1992) · Genomics · doi:10.1016/0888-7543(92)90285-z · Cited by 548
Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution
Melters, D. P., Bradnam, K. R., Young, H. A., Telis, N., May, M. R., Ruby, J. G., Sebra, R., Peluso, P. S., Eid, J. S., Rank, D. R., et al. (2013) · Genome biology · doi:10.1186/gb-2013-14-1-r10 · Cited by 528
Microsatellites and their genomic distribution, evolution, function and applications: A review with special reference to fish genetics
Chistiakov, D. A., Hellemans, B., & Volckaert, F. A. M. (2006) · Aquaculture · doi:10.1016/j.aquaculture.2005.11.031 · Cited by 507
Microsatellite marker development, mapping and applications in rice genetics and breeding
McCouch, S. R., Chen, X., Panaud, O., Temnykh, S., Xu, Y., Cho, Y. G., Huang, N., Ishii, T., & Blair, M. (1997) · Oryza: From Molecule to Plant · doi:10.1007/978-94-011-5794-0_9 · Cited by 479
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
Vonk, F. J., Casewell, N. R., Henkel, C. V., Heimberg, A. M., Jansen, H. J., McCleary, R. J. R., Kerkkamp, H. M. E., Vos, R. A., Guerreiro, I., Calvete, J. J., et al. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1314702110 · Cited by 474
Self-citation
The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan
Wang, Z., Pascual-Anaya, J., Zadissa, A., Li, W., Niimura, Y., Huang, Z., Li, C., White, S., Xiong, Z., Fang, D., et al. (2013) · Nature Genetics · doi:10.1038/ng.2615 · Cited by 431
Instability of short tandem repeats (microsatellites) in human cancers
Wooster, R., Cleton-Jansen, A. M., Collins, N., Mangion, J., Cornelis, R. S., Cooper, C. S., Gusterson, B. A., Ponder, B. A. J., von Deimling, A., Wiestler, O. D., et al. (1994) · Nature Genetics · doi:10.1038/ng0294-152 · Cited by 404
Conservation and dynamics of microsatellite loci over 300 million years of marine turtle evolution.
FitzSimmons, N. N., Moritz, C. C., & Moore, S. S. (1995) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a040218 · Cited by 375
Conservation of polymorphic simple sequence loci in cetacean species
Schlotteröer, C., Amos, B., & Tautz, D. (1991) · Nature · doi:10.1038/354063a0 · Cited by 364
Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs
Green, R. E., Braun, E. L., Armstrong, J., Earl, D., Nguyen, N., Hickey, G., Vandewege, M. W., St. John, J. A., Capella-Gutiérrez, S., Castoe, T. A., et al. (2014) · Science · doi:10.1126/science.1254449 · Cited by 359
Self-citation
Microsatellite marker development, mapping and applications in rice genetics and breeding
McCouch, S. R., Chen, X., Panaud, O., Temnykh, S. V., Xu, Y., Cho, Y. G., Huang, N., Ishii, T., & Blair, M. W. (1997) · Plant Molecular Biology · doi:10.1023/a:1005711431474 · Cited by 327
The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage
Shaffer, H. B., Minx, P. J., Warren, D. E., Shedlock, A. M., Thomson, R. C., Valenzuela, N., Abramyan, J., Amemiya, C. T., Badenhorst, D., Biggar, K. K., et al. (2013) · Genome biology · doi:10.1186/gb-2013-14-3-r28 · Cited by 322
Self-citation
Simple repeat DNA is not replicated simply
Richards, R. I., & Sutherland, G. R. (1994) · Nature Genetics · doi:10.1038/ng0294-114 · Cited by 310
The Burmese python genome reveals the molecular basis for extreme adaptation in snakes
Castoe, T. A., de Koning, A. P. J., Hall, K. T., Card, D. C., Schield, D. R., Fujita, M. K., Ruggiero, R. P., Degner, J. F., Daza, J. M., Gu, W., et al. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1314475110 · Cited by 285
Self-citation
Transcription-Coupled Repair Deficiency and Mutations in Human Mismatch Repair Genes
Mellon, I., Rajpal, D. K., Koi, M., Boland, C. R., & Champe, G. N. (1996) · Science · doi:10.1126/science.272.5261.557 · Cited by 284
The genome-wide determinants of human and chimpanzee microsatellite evolutionPreprint
Kelkar, Y., Tyekucheva, S., Chiaromonte, F., & Makova, K. D. (2007) · Genome Research · doi:10.1101/gr.7113408 · Cited by 269
Low Frequency of Microsatellites in the Avian GenomePreprint
Primmer, C. R., Raudsepp, T., Chowdhary, B. P., Møller, A. P., & Ellegren, H. (1997) · Genome Research · doi:10.1101/gr.7.5.471 · Cited by 242
Microsatellite instability in human solid tumors
Arzimanoglou, I. I., Gilbert, F., & Barber, H. R. K. (1998) · Cancer · doi:10.1002/(sici)1097-0142(19980515)82:10<1808::aid-cncr2>3.0.co;2-j · Cited by 238
Alu Repeats: A Source for the Genesis of Primate Microsatellites
Arcot, S. S., Wang, Z., Weber, J. L., Deininger, P. L., & Batzer, M. A. (1995) · Genomics · doi:10.1006/geno.1995.1224 · Cited by 226
Rapid identification of thousands of copperhead snake (Agkistrodon contortrix) microsatellite loci from modest amounts of 454 shotgun genome sequence
Castoe, T., Poole, A. W., Gu, W.-J., de Koning, A. J., Daza, J. M., Smith, E. N., & Pollock, D. (2009) · Molecular Ecology Resources · doi:10.1111/j.1755-0998.2009.02750.x · Cited by 212
Self-citation
Lessons learned from the dog genome
Wayne, R. K., & Ostrander, E. A. (2007) · Trends in Genetics · doi:10.1016/j.tig.2007.08.013 · Cited by 211
Highly conserved repetitive DNA sequences are present at human centromeres.
Grady, D. L., Ratliff, R. L., Robinson, D. L., McCanlies, E. C., Meyne, J., & Moyzis, R. K. (1992) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.89.5.1695 · Cited by 206
Mini‐ and microsatellite expansions: the recombination connection
Richard, G., & Pâques, F. (2000) · EMBO Reports · doi:10.1093/embo-reports/kvd031 · Cited by 195
Trinucleotide repeat expansion in neurological disease
Spada, A. R. L., Paulson, H. L., & Fischbeck, K. H. (1994) · Annals of Neurology · doi:10.1002/ana.410360604 · Cited by 187
Whole-genome sequence of the Tibetan frog Nanorana parkeri and the comparative evolution of tetrapod genomes
Sun, Y.-B., Xiong, Z., Xiang, X., Liu, S., Zhou, W.-W., Tu, X.-L., Li, Z., Wang, L., Wu, D.-D., Zhang, B.-L., et al. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1501764112 · Cited by 186
The Use of Microsatellite Variation to Infer Population Structure and Demographic History in a Natural Model System
Goldstein, D. B., Roemer, G. W., Smith, D. A., Reich, D., Bergman, A., & Wayne, R. K. (1999) · Genetics · doi:10.1093/genetics/151.2.797 · Cited by 185
Microsatellite instability regulates transcription factor binding and gene expression
Martín, P., Makepeace, K., Hill, S. A., Hood, D. W., & Moxon, E. R. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0406805102 · Cited by 184
470 million years of conservation of microsatellite loci among fish species
Rico, C., Rico, I., & Hewitt, G. M. (1996) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.1996.0083 · Cited by 178
Intimate association of microsatellite repeats with retrotransposons and other dispersed repetitive elements in barley
Ramsay, L., MacAulay, M. A., Cardle, L., Morgante, M., Ivanissevich, S. D., Maestri, E., Powell, W., & Waugh, R. (1999) · The Plant Journal · doi:10.1046/j.1365-313x.1999.00392.x · Cited by 176
MICROSATELLITE EVOLUTION IN VERTEBRATES: INFERENCE FROM AC DINUCLEOTIDE REPEATS
Neff, B. D., & Gross, M. R. (2001) · Evolution · doi:10.1111/j.0014-3820.2001.tb00822.x · Cited by 169
Microsatellite polymorphism in the human heme oxygenase-1 gene promoter and its application in association studies with Alzheimer and Parkinson disease
Kimpara, T., Takeda, A., Watanabe, K., Itoyama, Y., Ikawa, S., Watanabe, M., Arai, H., Sasaki, H., Higuchi, S., Okita, N., et al. (1997) · Human Genetics · doi:10.1007/s004390050480 · Cited by 169
Sequence conservation of microsatellites between Bos taurus (cattle), Capra hircus (goat) and related species. Examples of use in parentage testing and phylogeny analysis
Pepin, L., Yves Amigues, F., Lépingle, A., Berthier, J.-L., Bensaïd, A., & Vaiman, D. (1995) · Heredity · doi:10.1038/hdy.1995.7 · Cited by 163
The contribution of slippage-like processes to genome evolution
Hancock, J. M. (1995) · Journal of Molecular Evolution · doi:10.1007/bf00173185 · Cited by 163
(dC‐dA)n.(dG‐dT)n sequences have evolutionarily conserved chromosomal locations in Drosophila with implications for roles in chromosome structure and function.
Pardue, M. L., Lowenhaupt, K., Rich, A., & Nordheim, A. (1987) · The EMBO Journal · doi:10.1002/j.1460-2075.1987.tb02431.x · Cited by 154
Phylogenomics of nonavian reptiles and the structure of the ancestral amniote genome
Shedlock, A. M., Botka, C. W., Zhao, S., Shetty, J., Zhang, T., Liu, J. S., Deschavanne, P., & Edwards, S. V. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0606204104 · Cited by 138
Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes
John, J. A. S., Braun, E. L., Isberg, S. R., Miles, L. G., Chong, A. Y.-Y., Gongora, J., Dalzell, P., Moran, C., Bed’Hom, B., Abzhanov, A., et al. (2012) · Genome biology · doi:10.1186/gb-2012-13-1-415 · Cited by 136
Self-citation
Distribution of dinucleotide microsatellites in the Drosophila melanogaster genome
Bachtrog, D., Weiss, S. J., Zangerl, B., Brem, G., & Schlötterer, C. (1999) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a026142 · Cited by 134
Genome analysis and signature discovery for diving and sensory properties of the endangered Chinese alligator
Wan, Q., Pan, S., Hu, L. H., Zhu, Y., Xu, P., Xia, J., Chen, H., He, G.-Y., He, J., Ni, X., et al. (2013) · Cell Research · doi:10.1038/cr.2013.104 · Cited by 133
Microsatellite Variation and Recombination Rate in the Human Genome
Payseur, B. A., & Nachman, M. W. (2000) · Genetics · doi:10.1093/genetics/156.3.1285 · Cited by 130
Dominantly inherited, non-coding microsatellite expansion disorders
Ranum, L. P. W., & Day, J. (2002) · Current Opinion in Genetics & Development · doi:10.1016/s0959-437x(02)00297-6 · Cited by 119
Simple sequences and the expanding genome
Hancock, J. M. (1996) · BioEssays · doi:10.1002/bies.950180512 · Cited by 115
Endogenous hepadnaviruses, bornaviruses and circoviruses in snakes
Gilbert, C., Meik, J. M., Dashevsky, D., Card, D. C., Castoe, T. A., & Schaack, S. (2014) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2014.1122 · Cited by 103
Self-citation
Discovery of Highly Divergent Repeat Landscapes in Snake Genomes Using High-Throughput Sequencing
Castoe, T. A., Hall, K. T., Mboulas, M. L. G., Gu, W., de Koning, A. P. J., Fox, S. E., Poole, A. W., Vemulapalli, V., Daza, J. M., Mockler, T. C., et al. (2011) · Genome Biology and Evolution · doi:10.1093/gbe/evr043 · Cited by 102
Self-citation
The identification and characterization of microsatellites in the compact genome of the japanese pufferfish, Fugu rubripes: perspectives in functional and comparative genomic analyses
Edwards, Y. J. K., Elgar, G. S., Clark, M. S., & Bishop, M. J. (1998) · Journal of Molecular Biology · doi:10.1006/jmbi.1998.1752 · Cited by 95
NGG-triplet repeats form similar intrastrand structures: implications for the triplet expansion diseases
Usdin, K. (1998) · Nucleic Acids Research · doi:10.1093/nar/26.17.4078 · Cited by 88
Genome Evolution in Reptilia, the Sister Group of Mammals
Janes, D. E., Organ, C. L., Fujita, M. K., Shedlock, A. M., & Edwards, S. V. (2010) · Annual Review of Genomics and Human Genetics · doi:10.1146/annurev-genom-082509-141646 · Cited by 81
Sequencing the genome of the Burmese python (Python molurus bivittatus) as a model for studying extreme adaptations in snakes
Castoe, T. A., de Koning, A. P. J., Hall, K. T., Yokoyama, K. D., Gu, W., Smith, E. N., Feschotte, C., Uetz, P., Ray, D. A., Dobry, J., et al. (2011) · Genome biology · doi:10.1186/gb-2011-12-7-406 · Cited by 72
Self-citation
Allelic diversity in alligator microsatellite loci is negatively correlated with GC content of flanking sequences and evolutionary conservation of PCR amplifiability
Glenn, T. C., Stephan, W., Dessauer, H. C., & Braun, M. J. (1996) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a025678 · Cited by 70
Hellbender Genome Sequences Shed Light on Genomic Expansion at the Base of Crown Salamanders
Sun, C., & Mueller, R. L. (2014) · Genome Biology and Evolution · doi:10.1093/gbe/evu143 · Cited by 62
Mutation and evolution of microsatellites in Drosophila melanogaster
Schug, M. D., Hutter, C. M., Noor, M. A. F., & Aquadro, C. F. (1998) · Contemporary issues in genetics and evolution · doi:10.1007/978-94-011-5210-5_29 · Cited by 45
Mutation and evolution of microsatellites in Drosophila melanogaster
Schug, M. D., Hutter, C. M., Noor, M. A. F., & Aquadro, C. F. (1998) · Genetica · doi:10.1023/a:1017083025154 · Cited by 42
Conservation and evolution of microsatellite loci in primate taxa
Clisson, I., Lathuillière, M., & Crouau‐Roy, B. (2000) · American Journal of Primatology · Cited by 41
Insights into the Evolution of a Snake Venom Multi-Gene Family from the Genomic Organization of Echis ocellatus SVMP Genes
Sanz, L., & Calvete, J. J. (2016) · Toxins · doi:10.3390/toxins8070216 · Cited by 36
Gene Conversion Violates the Stepwise Mutation Model for Microsatellites in Y ‐Chromosomal Palindromic Repeats
Balaresque, P. L., King, T. E., Parkin, E. J., Heyer, É., Carvalho‐Silva, D., Kraaijenbrink, T., de Knijff, P., Tyler‐Smith, C., & Jobling, M. A. (2014) · Human Mutation · doi:10.1002/humu.22542 · Cited by 30
Two Low Coverage Bird Genomes and a Comparison of Reference-Guided versus De Novo Genome Assemblies
Card, D. C., Schield, D. R., Reyes‐Velasco, J., Fujita, M. K., Andrew, A. L., Oyler‐McCance, S. J., Fike, J. A., Tomback, D. F., Ruggiero, R. P., & Castoe, T. A. (2014) · PLoS ONE · doi:10.1371/journal.pone.0106649 · Cited by 29
Self-citation
Thousands of microsatellite loci from the venomous coralsnake M icrurus fulvius and variability of select loci across populations and related species
Castoe, T. A., Streicher, J. W., Meik, J. M., Ingrasci, M. J., Poole, A. W., de Koning, A. P. J., Campbell, J. A., Parkinson, C. L., Smith, E. N., & Pollock, D. D. (2012) · Molecular Ecology Resources · doi:10.1111/1755-0998.12000 · Cited by 28
Self-citation
EvobiR: Tools for comparative analyses and teaching evolutionary biology.
Blackmon, H., & Adams, R. H. (2015) · Zenodo (CERN European Organization for Nuclear Research) · doi:10.5281/zenodo.30938 · Cited by 26
Self-citation
d(GAmiddle dotTC)n microsatellite DNA sequences enhance homologous DNA recombination in SV40 minichromosomes
Benet, A. (2000) · Nucleic Acids Research · doi:10.1093/nar/28.23.4617 · Cited by 23
Squamate Reptile Genomics and Evolution
Shaney, K. J., Card, D. C., Schield, D. R., Ruggiero, R. P., Pollock, D. D., Mackessy, S. P., & Castoe, T. A. (2016) · Springer eBooks · doi:10.1007/978-94-007-6416-3_34 · Cited by 6
Self-citation
A suite of potentially amplifiable microsatellite loci for ten reptiles of conservation concern from Africa and Asia
Shaney, K. J., Adams, R., Kurniawan, N., Hamidy, A., Smith, E. N., & Castoe, T. A. (2016) · Conservation Genetics Resources · doi:10.1007/s12686-016-0534-y · Cited by 4
Self-citation
Squamate Reptile Genomics and Evolution
Shaney, K. J., Card, D. C., Schield, D. R., Ruggiero, R. P., Pollock, D. D., Mackessy, S. P., & Castoe, T. A. (2014) · Toxinology · doi:10.1007/978-94-007-6649-5_34-2 · Cited by 3
Self-citation

Research works printed but not linked: 4

Clisson I., 2000, Am. J. Primatol., 50, 205, 10.1002/(SICI)1098-2345(200003)50:3<205::AID-AJP3>3.0.CO;2-Y · DOI
FitzSimmons N.N., 1995, Mol. Biol. Evol., 12, 432
10.1554/0014-3820(2001)055[1717:MEIVIF]2.0.CO;2 · DOI
10.1554/05-130.1 · DOI

Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases
Tørresen, O. K., Star, B., Mier, P., Andrade-Navarro, M. A., Bateman, A., Jarnot, P., Gruca, A., Grynberg, M., Kajava, A. V., Promponas, V. J., et al. (2019) · Nucleic Acids Research · doi:10.1093/nar/gkz841 · Cited by 347
Genomic architecture of haddock (Melanogrammus aeglefinus) shows expansions of innate immune genes and short tandem repeats
Tørresen, O. K., Brieuc, M. S. O., Solbakken, M. H., Sørhus, E., Nederbragt, A. J., Jakobsen, K. S., Meier, S., Edvardsen, R. B., & Jentoft, S. (2018) · BMC Genomics · doi:10.1186/s12864-018-4616-y · Cited by 46
Teleost genomic repeat landscapes in light of diversification rates and ecology
Reinar, W. B., Tørresen, O. K., Nederbragt, A. J., Matschiner, M., Jentoft, S., & Jakobsen, K. S. (2023) · Mobile DNA · doi:10.1186/s13100-023-00302-9 · Cited by 28

See all 50

Authors: Adams, R. H., Blackmon, H., Reyes-Velasco, J., Schield, D. R., Card, D. C., Andrew, A. L., Waynewood, N., & Castoe, T. A.
Affiliations: Department of Biology, 501 S. Nedderman Dr., University of Texas at Arlington, TX 76019, USA.
Department of Ecology, Evolution & Behavior, 1987 Upper Buford Cir., University of Minnesota, Saint Paul, MN 55108-6097, USA.
Venue: Genome
Publisher: Canadian Science Publishing
Published: 2016-05
Volume: 59
Issue: 5
Pages: 295-310
ISSN: 0831-2796
1480-3321
DOI: 10.1139/gen-2015-0124
Cited by: 50
References: 88
Language: en
Licence: www.nrcresearchpress.com/page/about/CorporateTextAndDataMining (tdm)

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Bibliographic data: Semantic Scholar, OpenAlex, Crossref.

Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).

Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.

Microsatellite landscape evolutionary dynamics across 450 million years of vertebrate genome evolution

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