DNA-Encoded Chemical Libraries: A Selection System Based on Endowing Organic Compounds with Amplifiable Information
Open accessAbstract
The discovery of organic ligands that bind specifically to proteins is a central problem in chemistry, biology, and the biomedical sciences. The encoding of individual organic molecules with distinctive DNA tags, serving as amplifiable identification bar codes, allows the construction and screening of combinatorial libraries of unprecedented size, thus facilitating the discovery of ligands to many different protein targets. Fundamentally, one links powers of genetics and chemical synthesis. After the initial description of DNA-encoded chemical libraries in 1992, several experimental embodiments of the technology have been reduced to practice. This review provides a historical account of important milestones in the development of DNA-encoded chemical libraries, a survey of relevant ongoing research activities, and a glimpse into the future.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
DNA-encoded chemical libraries have made possible synthesis and testing of millions of compounds.
“More recently, DNA-econded chemical libraries have made possible synthesis and testing of millions of compounds165 and many big pharma companies have embraced this approach.”
From QSAR without borders (2020) · cites this paper as [165]
DNA-encoded libraries have the potential to sample vast chemical space (>10^9 compounds) in one or more closely related experiments.
“DNA-encoded libraries (DELs), which have the potential to sample vast chemical space in the span of one or more closely related experiments (>109 compounds) 133 .”
From Targeted protein degradation: expanding the toolbox (2019) · cites this paper as [133]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Continuous cultures of fused cells secreting antibody of predefined specificity
Köhler, G., & Milstein, C. (1975) · Nature · doi:10.1038/256495a0 · Cited by 17,200 · see citing works
Smith, G. P. (1985) · Science · doi:10.1126/science.4001944 · Cited by 4,143 · see citing works
Rapid generation of functional human IgG antibodies derived from Fab-on-phage display libraries
Jostock, T., Vanhove, M., Brepoels, E., van Gool, R., Daukandt, M., Wehnert, A., van Hegelsom, R., Dransfield, D., Sexton, D., Devlin, M., et al. (2004) · Journal of Immunological Methods · doi:10.1016/j.jim.2004.03.014 · Cited by 2,562 · see citing works
Phage antibodies: filamentous phage displaying antibody variable domains
McCafferty, J., Griffiths, A. D., Winter, G. P., & Chiswell, D. J. (1990) · Nature · doi:10.1038/348552a0 · Cited by 2,427 · see citing works
Marks, J. D., Hoogenboom, H. R., Bonnert, T. P., McCafferty, J., Griffiths, A. D., & Winter, G. P. (1991) · Journal of Molecular Biology · doi:10.1016/0022-2836(91)90498-u · Cited by 1,605 · see citing works
Sapsford, K. E., Algar, W. R., Berti, L., Gemmill, K. B., Casey, B. J., Oh, E., Stewart, M. H., & Medintz, I. L. (2013) · Chemical Reviews · doi:10.1021/cr300143v · Cited by 1,429 · see citing works
Encoded combinatorial chemistry.
Brenner, S., & Lerner, R. A. (1992) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.89.12.5381 · Cited by 1,014 · cited 1× · see citing works
“) together with Sidney Brenner postulated that it should be possible to “encode” chemistry with DNA (26).”
BackgroundSelf-citationTwenty years on: the impact of fragments on drug discovery
Erlanson, D. A., Fesik, S. W., Hubbard, R. E., Jahnke, W., & Jhoti, H. (2016) · Nature Reviews Drug Discovery · doi:10.1038/nrd.2016.109 · Cited by 1,000 · see citing works
Isolation of high affinity human antibodies directly from large synthetic repertoires.
Griffiths, A. D., Williams, S. C., Hartley, O., Tomlinson, I. M., Waterhouse, P. M., Crosby, W. L., Kontermann, R. E., Jones, P. T., Low, N. M., & Allison, T. J. (1994) · The EMBO Journal · doi:10.1002/j.1460-2075.1994.tb06626.x · Cited by 962 · see citing works
Winter, G., & Milstein, C. (1991) · Nature · doi:10.1038/349293a0 · Cited by 946 · see citing works
The promise and peril of chemical probes
Arrowsmith, C. H., Audia, J. E., Austin, C., Baell, J., Bennett, J., Blagg, J., Bountra, C., Brennan, P. E., Brown, P. J., Bunnage, M. E., et al. (2015) · Nature Chemical Biology · doi:10.1038/nchembio.1867 · Cited by 839 · see citing works
Generation of a Large Combinatorial Library of the Immunoglobulin Repertoire in Phage Lambda
Huse, W. D., Sastry, L., Iverson, S. A., Kang, A. S., Alting-Mees, M. A., Burton, D. R., Benkovic, S. J., & Lerner, R. A. (1989) · Science · doi:10.1126/science.2531466 · Cited by 805 · see citing works
Self-citationDesign, synthesis and selection of DNA-encoded small-molecule libraries
Clark, M., Acharya, R. A., Arico-Muendel, C. C., Belyanskaya, S. L., Benjamin, D. R., Carlson, N. R., Chiu, C. H., Creaser, S. P., Cuozzo, J. W., Davie, C. P., et al. (2009) · Nature Chemical Biology · doi:10.1038/nchembio.211 · Cited by 682 · see citing works
DNA-encoded chemistry: enabling the deeper sampling of chemical space
Goodnow, R. A., Dumelin, C. E., & Keefe, A. D. (2017) · Nature Reviews Drug Discovery · doi:10.1038/nrd.2016.213 · Cited by 621 · see citing works
Towards the Optimal Screening Collection: A Synthesis Strategy
Nielsen, T. E., & Schreiber, S. L. (2007) · Angewandte Chemie International Edition · doi:10.1002/anie.200703073 · Cited by 552 · see citing works
DNA-Templated Organic Synthesis and Selection of a Library of Macrocycles
Gartner, Z. J., Tse, B. N., Grubina, R., Doyon, J. B., Snyder, T. M., & Liu, D. R. (2004) · Science · doi:10.1126/science.1102629 · Cited by 506 · see citing works
Kang, A. S., Barbas, C. F., Janda, K. D., Benkovic, S. J., & Lerner, R. A. (1991) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.88.10.4363 · Cited by 411 · see citing works
Self-citationYeast surface display for protein engineering and characterization
Gai, S. A., & Wittrup, K. D. (2007) · Current Opinion in Structural Biology · doi:10.1016/j.sbi.2007.08.012 · Cited by 391 · see citing works
The Evolution of Protein Kinase Inhibitors from Antagonists to Agonists of Cellular Signaling
Dar, A. C., & Shokat, K. M. (2011) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-090308-173656 · Cited by 388 · see citing works
Generation and screening of an oligonucleotide-encoded synthetic peptide library.
Needels, M. C., Jones, D. G., Tate, E. H., Heinkel, G. L., Kochersperger, L. M., Dower, W. J., Barrett, R. W., & Gallop, M. A. (1993) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.90.22.10700 · Cited by 345 · see citing works
Encoded self-assembling chemical libraries
Melkko, S., Scheuermann, J., Dumelin, C. E., & Neri, D. (2004) · Nature Biotechnology · doi:10.1038/nbt961 · Cited by 343 · see citing works
Self-citationHarris, P. A., King, B. W., Bandyopadhyay, D., Berger, S. B., Campobasso, N., Capriotti, C. A., Cox, J. A., Dare, L. C., Dong, X., Finger, J. N., et al. (2016) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.5b01898 · Cited by 287 · see citing works
Chemical Space of DNA-Encoded Libraries
Franzini, R. M., & Randolph, C. (2016) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.5b01874 · Cited by 274 · see citing works
Reaction discovery enabled by DNA-templated synthesis and in vitro selection
Kanan, M. W., Rozenman, M. M., Sakurai, K., Snyder, T. M., & Liu, D. R. (2004) · Nature · doi:10.1038/nature02920 · Cited by 253 · see citing works
Anti-diabetic activity of insulin-degrading enzyme inhibitors mediated by multiple hormones
Maianti, J. P., McFedries, A., Foda, Z. H., Kleiner, R. E., Du, X. Q., Leissring, M. A., Tang, W., Charron, M. J., Seeliger, M. A., Saghatelian, A., et al. (2014) · Nature · doi:10.1038/nature13297 · Cited by 251 · see citing works
Synthetic methods for the implementation of encoded combinatorial chemistry
Nielsen, J., Brenner, S., & Janda, K. D. (1993) · Journal of the American Chemical Society · doi:10.1021/ja00074a063 · Cited by 250 · see citing works
In vitro selection from protein and peptide libraries
Clackson, T., & Wells, J. A. (1994) · Trends in biotechnology · doi:10.1016/0167-7799(94)90079-5 · Cited by 245 · see citing works
DNA-Encoded Chemical Libraries: Advancing beyond Conventional Small-Molecule Libraries
Franzini, R. M., Neri, D., & Scheuermann, J. (2014) · Accounts of Chemical Research · doi:10.1021/ar400284t · Cited by 244 · see citing works
Self-citationA Portable Albumin Binder from a DNA‐Encoded Chemical Library
Dumelin, C. E., Trüssel, S., Buller, F., Trachsel, E., Bootz, F., Zhang, Y., Mannocci, L., Beck, S. C., Drumea‐Mirancea, M., Seeliger, M. W., et al. (2008) · Angewandte Chemie International Edition · doi:10.1002/anie.200704936 · Cited by 234 · see citing works
Self-citationSmall-molecule discovery from DNA-encoded chemical libraries
Kleiner, R. E., Dumelin, C. E., & Liu, D. R. (2011) · Chemical Society Reviews · doi:10.1039/c1cs15076f · Cited by 233 · see citing works
Jespers, L. S., Roberts, A., Mahler, S. M., Winter, G. P., & Hoogenboom, H. R. (1994) · Nature Biotechnology · doi:10.1038/nbt0994-899 · Cited by 233 · see citing works
Mannocci, L., Zhang, Y., Scheuermann, J., Leimbacher, M., Bellis, G. D., Rizzi, E., Dumelin, C. E., Melkko, S., & Neri, D. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0805130105 · Cited by 226 · see citing works
Self-citationWilchek, M., Bayer, E. A., & Livnah, O. (2005) · Immunology Letters · doi:10.1016/j.imlet.2005.10.022 · Cited by 226 · see citing works
Wichert, M., Krall, N., Decurtins, W., Franzini, R. M., Pretto, F., Schneider, P., Neri, D., & Scheuermann, J. (2015) · Nature Chemistry · doi:10.1038/nchem.2158 · Cited by 217 · see citing works
Self-citationWhat is a “DNA-Compatible” Reaction?
Malone, M. L., & Paegel, B. M. (2016) · ACS Combinatorial Science · doi:10.1021/acscombsci.5b00198 · Cited by 209 · see citing works
DNA Compatible Multistep Synthesis and Applications to DNA Encoded Libraries
Satz, A. L., Cai, J., Chen, Y., Goodnow, R. A., Gruber, F., Kowalczyk, A., Petersen, A. C., Naderi-Oboodi, G., Orzechowski, L., & Strebel, Q. (2015) · Bioconjugate Chemistry · doi:10.1021/acs.bioconjchem.5b00239 · Cited by 208 · see citing works
Belyanskaya, S. L., Ding, Y., Callahan, J. F., Lazaar, A. L., & Israel, D. I. (2017) · ChemBioChem · doi:10.1002/cbic.201700014 · Cited by 198 · see citing works
Artificial Metalloenzymes Based on the Biotin–Streptavidin Technology: Challenges and Opportunities
Heinisch, T., & Ward, T. R. (2016) · Accounts of Chemical Research · doi:10.1021/acs.accounts.6b00235 · Cited by 188 · see citing works
A Yoctoliter-Scale DNA Reactor for Small-Molecule Evolution
Hansen, M. H., Blakskjær, P., Petersen, L. K., Hansen, T. H., Højfeldt, J. W., Gothelf, K. V., & Hansen, N. J. V. (2009) · Journal of the American Chemical Society · doi:10.1021/ja808558a · Cited by 184 · see citing works
Advancing Biological Understanding and Therapeutics Discovery with Small-Molecule Probes
Schreiber, S. L., Kotz, J., Li, M., Aubé, J., Austin, C. P., Reed, J. C., Rosen, H., White, E. L., Sklar, L. A., Lindsley, C. W., et al. (2015) · Cell · doi:10.1016/j.cell.2015.05.023 · Cited by 168 · see citing works
DNA Display I. Sequence-Encoded Routing of DNA Populations
Halpin, D. R., & Harbury, P. B. (2004) · PLoS Biology · doi:10.1371/journal.pbio.0020173 · Cited by 167 · see citing works
Kleiner, R. E., Dumelin, C. E., Tiu, G. C., Sakurai, K., & Liu, D. R. (2010) · Journal of the American Chemical Society · doi:10.1021/ja104903x · Cited by 158 · see citing works
Synthetic Ligands Discovered by in Vitro Selection
Wrenn, S. J., Weisinger, R. M., Halpin, D. R., & Harbury, P. B. (2007) · Journal of the American Chemical Society · doi:10.1021/ja073993a · Cited by 151 · see citing works
Ribosome Display: A Perspective
Plückthun, A. (2011) · Methods in molecular biology · doi:10.1007/978-1-61779-379-0_1 · Cited by 138 · see citing works
Gorska, K. I., Huang, K., Chaloin, O., & Winssinger, N. (2009) · Angewandte Chemie International Edition · doi:10.1002/anie.200903328 · Cited by 136 · see citing works
Selection of Carbonic Anhydrase IX Inhibitors from One Million DNA-Encoded Compounds
Buller, F., Steiner, M., Frey, K., Mircsof, D., Scheuermann, J., Kalisch, M., Bühlmann, P., Supuran, C. T., & Neri, D. (2010) · ACS Chemical Biology · doi:10.1021/cb1003477 · Cited by 136 · see citing works
Self-citationWu, Z., Graybill, T. L., Zeng, X., Platchek, M., Zhang, J., Bodmer, V. Q., Wisnoski, D. D., Deng, J., Coppo, F. T., Yao, G., et al. (2015) · ACS Combinatorial Science · doi:10.1021/acscombsci.5b00124 · Cited by 136 · see citing works
Automated screening for small organic ligands using DNA-encoded chemical libraries
Decurtins, W., Wichert, M., Franzini, R. M., Buller, F., Stravs, M. A., Zhang, Y., Neri, D., & Scheuermann, J. (2016) · Nature Protocols · doi:10.1038/nprot.2016.039 · Cited by 135 · see citing works
Self-citationLi, Y., Luca, R. D., Cazzamalli, S., Pretto, F., Bajic, D., Scheuermann, J., & Neri, D. (2018) · Nature Chemistry · doi:10.1038/s41557-018-0017-8 · Cited by 133 · see citing works
Self-citationOptimized Reaction Conditions for Amide Bond Formation in DNA-Encoded Combinatorial Libraries
Li, Y., Gabriele, E., Samain, F., Favalli, N., Sladojevich, F., Scheuermann, J., & Neri, D. (2016) · ACS Combinatorial Science · doi:10.1021/acscombsci.6b00058 · Cited by 129 · see citing works
Self-citationHalpin, D. R., & Harbury, P. B. (2004) · PLoS Biology · doi:10.1371/journal.pbio.0020174 · Cited by 125 · see citing works
DNA-encoded chemical libraries: foundations and applications in lead discovery
Zimmermann, G., & Neri, D. (2016) · Drug Discovery Today · doi:10.1016/j.drudis.2016.07.013 · Cited by 124 · see citing works
Self-citationDNA Display III. Solid-Phase Organic Synthesis on Unprotected DNA
Halpin, D. R., Lee, J. A., Wrenn, S. J., & Harbury, P. B. (2004) · PLoS Biology · doi:10.1371/journal.pbio.0020175 · Cited by 122 · see citing works
Chemical Biology Probes from Advanced DNA-encoded Libraries
Salamon, H., Škopić, M. K., Jung, K., Bugain, O., & Brunschweiger, A. (2016) · ACS Chemical Biology · doi:10.1021/acschembio.5b00981 · Cited by 111 · see citing works
Intraperitoneal radio‐localization of tumors pre‐targeted by biotinylated monoclonal antibodies
Paganelli, G., Pervez, S., Siccardi, A. G., Rowlinson, G., Deleide, G., Chiolerio, F., Malcovati, M., Scassellati, G. A., & Epenetos, A. A. (1990) · International Journal of Cancer · doi:10.1002/ijc.2910450632 · Cited by 109 · see citing works
Discovery of TNF Inhibitors from a DNA-Encoded Chemical Library based on Diels-Alder Cycloaddition
Buller, F., Zhang, Y., Scheuermann, J., Schäfer, J., Bühlmann, P., & Neri, D. (2009) · Chemistry & Biology · doi:10.1016/j.chembiol.2009.09.011 · Cited by 109 · see citing works
Self-citationIsolation of High‐Affinity Trypsin Inhibitors from a DNA‐Encoded Chemical Library
Melkko, S., Zhang, Y., Dumelin, C. E., Scheuermann, J., & Neri, D. (2007) · Angewandte Chemie International Edition · doi:10.1002/anie.200700654 · Cited by 104 · see citing works
Self-citationMcGregor, L. M., Gorin, D. J., Dumelin, C. E., & Liu, D. R. (2010) · Journal of the American Chemical Society · doi:10.1021/ja107677q · Cited by 103 · see citing works
Discovery of Small‐Molecule Interleukin‐2 Inhibitors from a DNA‐Encoded Chemical Library
Leimbacher, M., Zhang, Y., Mannocci, L., Stravs, M. A., Geppert, T., Scheuermann, J., Schneider, G., & Neri, D. (2012) · Chemistry - A European Journal · doi:10.1002/chem.201200952 · Cited by 103 · see citing works
Self-citationFranzini, R. M., Ekblad, T., Zhong, N., Wichert, M., Decurtins, W., Nauer, A., Zimmermann, M., Samain, F., Scheuermann, J., Brown, P. J., et al. (2015) · Angewandte Chemie International Edition · doi:10.1002/anie.201410736 · Cited by 103 · see citing works
Self-citationDesign and synthesis of a novel DNA-encoded chemical library using Diels-Alder cycloadditions
Buller, F., Mannocci, L., Zhang, Y., Dumelin, C. E., Scheuermann, J., & Neri, D. (2008) · Bioorganic & Medicinal Chemistry Letters · doi:10.1016/j.bmcl.2008.07.038 · Cited by 102 · see citing works
Self-citationPNA-encoded chemical libraries
Zambaldo, C., Barluenga, S., & Winssinger, N. (2015) · Current Opinion in Chemical Biology · doi:10.1016/j.cbpa.2015.01.005 · Cited by 100 · see citing works
Litovchick, A., Dumelin, C. E., Habeshian, S., Gikunju, D., Guié, M.-A., Zhang, Y., Sigel, E. A., Cuozzo, J. W., Keefe, A. D., & Clark, M. (2015) · Scientific Reports · doi:10.1038/srep10916 · Cited by 100 · see citing works
Daguer, J., Zambaldo, C., Ciobanu, M., Morieux, P., Barluenga, S., & Winssinger, N. (2014) · Chemical Science · doi:10.1039/c4sc01654h · Cited by 91 · see citing works
Chan, A. I., McGregor, L. M., Jain, T., & Liu, D. R. (2017) · Journal of the American Chemical Society · doi:10.1021/jacs.7b04880 · Cited by 91 · see citing works
Selecting chemicals: the emerging utility of DNA-encoded libraries
Clark, M. (2010) · Current Opinion in Chemical Biology · doi:10.1016/j.cbpa.2010.02.017 · Cited by 89 · see citing works
McGregor, L. M., Jain, T., & Liu, D. R. (2014) · Journal of the American Chemical Society · doi:10.1021/ja412934t · Cited by 87 · see citing works
Novel p38α MAP kinase inhibitors identified from yoctoReactor DNA-encoded small molecule library
Petersen, L. K., Blakskjær, P., Chaikuad, A., Christensen, A. B., Dietvorst, J., Holmkvist, J., Knapp, S., Kořínek, M., Larsen, L. K., Pedersen, A. E., et al. (2016) · MedChemComm · doi:10.1039/c6md00241b · Cited by 86 · see citing works
Seigal, B. A., Connors, W. H., Fraley, A. W., Borzilleri, R. M., Carter, P. H., Emanuel, S. L., Fargnoli, J., Kim, K., Lei, M., Naglich, J. G., et al. (2015) · Journal of Medicinal Chemistry · doi:10.1021/jm501892g · Cited by 85 · see citing works
Cuozzo, J. W., Gikunju, D., Habeshian, S., Hupp, C. D., Keefe, A. D., Sigel, E. A., Soutter, H. H., Thomson, H. A., Zhang, Y., & Clark, M. (2017) · ChemBioChem · doi:10.1002/cbic.201600573 · Cited by 81 · see citing works
Application of Biocatalysis to on‐DNA Carbohydrate Library Synthesis
Thomas, B., Lu, X., Birmingham, W. R., Huang, K., Both, P., Reyes-Martínez, J. E., Young, R. J., Davie, C. P., & Flitsch, S. L. (2017) · ChemBioChem · doi:10.1002/cbic.201600678 · Cited by 80 · see citing works
Satz, A. L., Hochstrasser, R., & Petersen, A. C. (2017) · ACS Combinatorial Science · doi:10.1021/acscombsci.7b00023 · Cited by 80 · see citing works
A Specific and Covalent JNK‐1 Ligand Selected from an Encoded Self‐Assembling Chemical Library
Zimmermann, G., Rieder, U., Bajic, D., Vanetti, S., Chaikuad, A., Knapp, S., Scheuermann, J., Mattarella, M., & Neri, D. (2017) · Chemistry – A European Journal · doi:10.1002/chem.201701644 · Cited by 77 · see citing works
Self-citationDing, Y., O’Keefe, H. P., DeLorey, J. L., Israel, D. I., Messer, J. A., Chiu, C. H., Skinner, S. R., Matico, R., Murray-Thompson, M. F., Li, F., et al. (2015) · ACS Medicinal Chemistry Letters · doi:10.1021/acsmedchemlett.5b00138 · Cited by 75 · see citing works
Yang, H., Medeiros, P. F., Raha, K., Elkins, P. A., Lind, K. E., Lehr, R. V., Adams, N. D., Burgess, J. L., Schmidt, S. J., Knight, S. D., et al. (2015) · ACS Medicinal Chemistry Letters · doi:10.1021/acsmedchemlett.5b00025 · Cited by 75 · see citing works
Zambaldo, C., Daguer, J.-P., Saarbach, J., Barluenga, S., & Winssinger, N. (2016) · MedChemComm · doi:10.1039/c6md00242k · Cited by 75 · see citing works
Prioritizing multiple therapeutic targets in parallel using automated DNA-encoded library screening
Machutta, C. A., Kollmann, C. S., Lind, K. E., Bai, X., Chan, P. F., Huang, J., Ballell, L., Belyanskaya, S. L., Besra, G. S., Barros-Aguirre, D., et al. (2017) · Nature Communications · doi:10.1038/ncomms16081 · Cited by 70 · see citing works
Recent advances on the encoding and selection methods of DNA-encoded chemical library
Shi, B., Zhou, Y., Huang, Y., Zhang, J.-F., & Li, X. (2016) · Bioorganic & Medicinal Chemistry Letters · doi:10.1016/j.bmcl.2016.12.025 · Cited by 67 · see citing works
Identification of Covalent Bromodomain Binders through DNA Display of Small Molecules
Daguer, J., Zambaldo, C., Abegg, D., Barluenga, S., Tallant, C., Müller, S., Adibekian, A., & Winssinger, N. (2015) · Angewandte Chemie International Edition · doi:10.1002/anie.201412276 · Cited by 65 · see citing works
Samain, F., Ekblad, T., Mikutis, G., Zhong, N., Zimmermann, M., Nauer, A., Bajic, D., Decurtins, W., Scheuermann, J., Brown, P. J., et al. (2015) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.5b00432 · Cited by 65 · see citing works
Self-citationBlakskjær, P., Heitner, T., & Hansen, N. J. V. (2015) · Current Opinion in Chemical Biology · doi:10.1016/j.cbpa.2015.02.003 · Cited by 64 · see citing works
Crosslinking of DNA-linked ligands to target proteins for enrichment from DNA-encoded libraries
Denton, K. E., & Krusemark, C. J. (2016) · MedChemComm · doi:10.1039/c6md00288a · Cited by 62 · see citing works
Multistep DNA-Templated Synthesis Using a Universal Template
Li, Y., Zhao, P., Zhang, M., Zhao, X., & Li, X. (2013) · Journal of the American Chemical Society · doi:10.1021/ja409936r · Cited by 60 · see citing works
Application of NMR and Molecular Docking in Structure-Based Drug Discovery
Stark, J. L., & Powers, R. (2011) · Topics in current chemistry · doi:10.1007/128_2011_213 · Cited by 59 · see citing works
Buller, F., Steiner, M., Scheuermann, J., Mannocci, L., Nissen, I., Kohler, M., Beisel, C., & Neri, D. (2010) · Bioorganic & Medicinal Chemistry Letters · doi:10.1016/j.bmcl.2010.05.053 · Cited by 53 · see citing works
Self-citationIsolation of Potent and Specific Trypsin Inhibitors from a DNA-Encoded Chemical Library
Mannocci, L., Melkko, S., Buller, F., MOLNAR, I. P., Bianké, J.-P. G., Dumelin, C. E., Scheuermann, J., & Neri, D. (2010) · Bioconjugate Chemistry · doi:10.1021/bc100198x · Cited by 53 · see citing works
Self-citationIntegrating biophysics with HTS-driven drug discovery projects
Folmer, R. H. A. (2016) · Drug Discovery Today · doi:10.1016/j.drudis.2016.01.011 · Cited by 45 · see citing works
“Cap-and-Catch” Purification for Enhancing the Quality of Libraries of DNA Conjugates
Franzini, R. M., Biendl, S., Mikutis, G., Samain, F., Scheuermann, J., & Neri, D. (2015) · ACS Combinatorial Science · doi:10.1021/acscombsci.5b00072 · Cited by 43 · see citing works
Self-citationUsing label-free screening technology to improve efficiency in drug discovery
Halai, R., & Cooper, M. A. (2012) · Expert Opinion on Drug Discovery · doi:10.1517/17460441.2012.651121 · Cited by 41 · see citing works
Hit‐Validation Methodologies for Ligands Isolated from DNA‐Encoded Chemical Libraries
Zimmermann, G., Li, Y., Rieder, U., Mattarella, M., Neri, D., & Scheuermann, J. (2017) · ChemBioChem · doi:10.1002/cbic.201600637 · Cited by 41 · see citing works
Self-citationShi, B., Deng, Y., Zhao, P., & Li, X. (2017) · Bioconjugate Chemistry · doi:10.1021/acs.bioconjchem.7b00343 · Cited by 40 · see citing works
Franzini, R. M., Nauer, A., Scheuermann, J., & Neri, D. (2015) · Chemical Communications · doi:10.1039/c5cc01230a · Cited by 39 · see citing works
Self-citationRegioselective ligation of oligoribonucleotides using DNA splints
Bain, J. D., & Switzer, C. (1992) · Nucleic Acids Research · doi:10.1093/nar/20.16.4372 · Cited by 36 · see citing works
Bao, J., Krylova, S. M., Cherney, L. T., Hale, R. L., Belyanskaya, S. L., Chiu, C. H., Shaginian, A., Arico-Muendel, C. C., & Krylov, S. N. (2016) · Analytical Chemistry · doi:10.1021/acs.analchem.6b00980 · Cited by 33 · see citing works
Li, Y., Zimmermann, G., Scheuermann, J., & Neri, D. (2017) · ChemBioChem · doi:10.1002/cbic.201600626 · Cited by 27 · see citing works
Self-citationChemical ligation methods for the tagging of DNA-encoded chemical libraries
Keefe, A. D., Clark, M., Hupp, C. D., Litovchick, A., & Zhang, Y. (2015) · Current Opinion in Chemical Biology · doi:10.1016/j.cbpa.2015.02.015 · Cited by 23 · see citing works
Goodnow, R. A. (2014) · doi:10.1002/9781118832738.ch18 · Cited by 6 · see citing works
Flagged first, then by citations
Research works printed but not linked: 1
- [13]Goodnow RAJ A Handbook for DNA-Encoded Chemistry: Theory and Applications for Exploring Chemical Space Goodnow RAJ Wiley & Sons 2014 417 426
Cited by
Sorted by citations
Computational approaches streamlining drug discovery
Sadybekov, A., & Katritch, V. (2023) · Nature · doi:10.1038/s41586-023-05905-z · Cited by 1,342 · see citing works
Targeted protein degradation: expanding the toolbox
Schapira, M., Calabrese, M. F., Bullock, A. N., & Crews, C. M. (2019) · Nature Reviews Drug Discovery · doi:10.1038/s41573-019-0047-y · Cited by 960 · see citing works
Muratov, E. N., Bajorath, J., Sheridan, R. P., Tetko, I. V., Filimonov, D., Poroikov, V., Oprea, T. I., Baskin, I. I., Varnek, A., Roitberg, A., et al. (2020) · Chemical Society Reviews · doi:10.1039/d0cs00098a · Cited by 913 · see citing works
G protein-coupled receptors: structure- and function-based drug discovery
Yang, D., Zhou, Q., Labroska, V., Qin, S., Darbalaei, S., Wu, Y., Yuliantie, E., Xie, L., Tao, H., Cheng, J., et al. (2021) · Signal Transduction and Targeted Therapy · doi:10.1038/s41392-020-00435-w · Cited by 641 · see citing works
Advances in Targeting ‘Undruggable’ transcription Factors With Small Molecules
Henley, M. J., & Koehler, A. N. (2021) · Nature Reviews Drug Discovery · doi:10.1038/s41573-021-00199-0 · Cited by 409 · see citing works
DNA-Encoded Chemical Libraries: A Comprehensive Review with Succesful Stories and Future Challenges
Gironda-Martínez, A., Donckele, E. J., Samain, F., & Neri, D. (2021) · ACS Pharmacology & Translational Science · doi:10.1021/acsptsci.1c00118 · Cited by 344 · see citing works
Self-citationCyclic peptide drugs approved in the last two decades (2001–2021)
Zhang, H., & Chen, S. (2021) · RSC Chemical Biology · doi:10.1039/d1cb00154j · Cited by 327 · see citing works
RNA Display Methods for the Discovery of Bioactive Macrocycles
Huang, Y., Wiedmann, M. M., & Suga, H. (2018) · Chemical Reviews · doi:10.1021/acs.chemrev.8b00430 · Cited by 309 · see citing works
The RaPID Platform for the Discovery of Pseudo-Natural Macrocyclic Peptides
Goto, Y., & Suga, H. (2021) · Accounts of Chemical Research · doi:10.1021/acs.accounts.1c00391 · Cited by 271 · see citing works
Small-molecule discovery through DNA-encoded libraries
Peterson, A. A., & Liu, D. R. (2023) · Nature Reviews Drug Discovery · doi:10.1038/s41573-023-00713-6 · Cited by 260 · see citing works
Sohrabi, C., Foster, A., & Tavassoli, A. (2020) · Nature Reviews Chemistry · doi:10.1038/s41570-019-0159-2 · Cited by 230 · see citing works
DNA-Encoded Chemistry: Drug Discovery from a Few Good Reactions
Fitzgerald, P. R., & Paegel, B. M. (2020) · Chemical Reviews · doi:10.1021/acs.chemrev.0c00789 · Cited by 228 · see citing works
Recent Advances in Selective and Irreversible Covalent Ligand Development and Validation
Zhang, T., Hatcher, J. M., Teng, M., Gray, N. S., & Kostic, M. (2019) · Cell Chemical Biology · doi:10.1016/j.chembiol.2019.09.012 · Cited by 178 · see citing works
DNA ‐encoded chemical libraries – achievements and remaining challenges
Favalli, N., Bassi, G., Scheuermann, J., & Neri, D. (2018) · FEBS Letters · doi:10.1002/1873-3468.13068 · Cited by 174 · see citing works
Self-citationHou, W., Liu, B., & Xu, H. (2020) · European Journal of Medicinal Chemistry · doi:10.1016/j.ejmech.2020.112081 · Cited by 171 · see citing works
Liu, F., Wang, H., Li, S., Bare, G. A. L., Chen, X., Wang, C., Moses, J. E., Wu, P., & Sharpless, K. B. (2019) · Angewandte Chemie International Edition · doi:10.1002/anie.201902489 · Cited by 166 · see citing works
How We Think about Targeting RNA with Small Molecules
Costales, M. G., Childs‐Disney, J. L., Haniff, H. S., & Disney, M. D. (2020) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.9b01927 · Cited by 164 · see citing works
The role of reversible and irreversible covalent chemistry in targeted protein degradation
Kiely‐Collins, H., Winter, G. E., & Bernardes, G. J. L. (2021) · Cell chemical biology · doi:10.1016/j.chembiol.2021.03.005 · Cited by 156 · see citing works
Flood, D. T., Asai, S., Zhang, X., Wang, J., Yoon, L., Adams, Z. C., Dillingham, B. C., Sanchez, B. B., Vantourout, J. C., Flanagan, M. E., et al. (2019) · Journal of the American Chemical Society · doi:10.1021/jacs.9b03774 · Cited by 153 · see citing works
Expanding the arsenal of E3 ubiquitin ligases for proximity-induced protein degradation
Kannt, A., & Đikić, I. (2021) · Cell chemical biology · doi:10.1016/j.chembiol.2021.04.007 · Cited by 148 · see citing works
Gambini, L., Baggio, C., Udompholkul, P., Jossart, J. N., Salem, A. F., Perry, J. J. P., & Pellecchia, M. (2019) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.9b00561 · Cited by 141 · see citing works
Li, P., Terrett, J. A., & Zbieg, J. R. (2020) · ACS Medicinal Chemistry Letters · doi:10.1021/acsmedchemlett.0c00436 · Cited by 143 · see citing works
Kinetically guided radical-based synthesis of C(sp 3 )−C(sp 3 ) linkages on DNA
Wang, J., Lundberg, H., Asai, S., Martín-Acosta, P., Chen, J. S., Brown, S., Farrell, W. P., Dushin, R. G., O’Donnell, C. J., Ratnayake, A. S., et al. (2018) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1806900115 · Cited by 139 · see citing works
Selection of DNA-encoded chemical libraries against endogenous membrane proteins on live cells
Huang, Y., Meng, L. H., Nie, Q., Zhou, Y., Chen, L., Yang, S., Fung, Y. M. E., Li, X., Huang, C., Cao, Y. W., et al. (2020) · Nature Chemistry · doi:10.1038/s41557-020-00605-x · Cited by 134 · see citing works
Selection of DNA-Encoded Libraries to Protein Targets within and on Living Cells
Cai, B., Kim, D., Akhand, S. S., Sun, Y., Cassell, R. J., Alpsoy, A., Dykhuizen, E. C., van Rijn, R. M., Wendt, M. K., & Krusemark, C. J. (2019) · Journal of the American Chemical Society · doi:10.1021/jacs.9b08085 · Cited by 121 · see citing works
Strategies for developing DNA-encoded libraries beyond binding assays
Huang, Y., Li, Y., & Li, X. (2022) · Nature Chemistry · doi:10.1038/s41557-021-00877-x · Cited by 120 · see citing works
Novel Computational Approach to Predict Off-Target Interactions for Small Molecules
Rao, M. S., Gupta, R., Liguori, M. J., Hu, M., Huang, X., Mantena, S. R., Mittelstadt, S. W., Blomme, E. A. G., & Vleet, T. R. V. (2019) · Frontiers in Big Data · doi:10.3389/fdata.2019.00025 · Cited by 122 · see citing works
Xu, H., Ma, F., Wang, N., Hou, W., Xiong, H., Lu, F., Li, J., Wang, S., Ma, P., Yang, G., et al. (2019) · Advanced Science · doi:10.1002/advs.201901551 · Cited by 120 · see citing works
Self-citationDNA-Encoded Dynamic Chemical Library and Its Applications in Ligand Discovery
Zhou, Y., Li, C., Peng, J., Xie, L., Meng, L. H., Li, Q., Zhang, J., Li, X., Li, X., Huang, X., et al. (2018) · Journal of the American Chemical Society · doi:10.1021/jacs.8b09277 · Cited by 110 · see citing works
Recent achievements and current trajectories of diversity-oriented synthesis
Gerry, C. J., & Schreiber, S. L. (2019) · Current Opinion in Chemical Biology · doi:10.1016/j.cbpa.2019.08.008 · Cited by 106 · see citing works
Chemical composition of DNA-encoded libraries, past present and future
Dickson, P., & Kodadek, T. J. (2019) · Organic & Biomolecular Chemistry · doi:10.1039/c9ob00581a · Cited by 101 · see citing works
Strategies for targeting undruggable targets
Zhang, G., Zhang, J., Gao, Y., Li, Y., & Li, Y. (2021) · Expert Opinion on Drug Discovery · doi:10.1080/17460441.2021.1969359 · Cited by 102 · see citing works
A DNA‐Encoded Chemical Library Incorporating Elements of Natural Macrocycles
Stress, C., Sauter, B., Schneider, L. A., Sharpe, T., & Gillingham, D. G. (2019) · Angewandte Chemie International Edition · doi:10.1002/anie.201902513 · Cited by 98 · see citing works
A Mild, DNA-Compatible Nitro Reduction Using B2(OH)4
Du, H.-C., Simmons, N., Faver, J. C., Yu, Z., Palaniappan, M., Riehle, K. P., & Matzuk, M. M. (2019) · Organic Letters · doi:10.1021/acs.orglett.9b00497 · Cited by 95 · see citing works
Reaction development for DNA-encoded library technology: From evolution to revolution?
Götte, K., Chines, S., & Brunschweiger, A. (2020) · Tetrahedron Letters · doi:10.1016/j.tetlet.2020.151889 · Cited by 94 · see citing works
Gao, H., Lin, S., Zhang, S., Chen, W., Liu, X., Yang, G., Lerner, R. A., Xu, H., Zhou, Z., & Yi, W. (2020) · Angewandte Chemie International Edition · doi:10.1002/anie.202013052 · Cited by 94 · see citing works
Self-citationEvolution of chemistry and selection technology for DNA-encoded library
Ma, P., Zhang, S., Huang, Q., Gu, Y., Zhou, Z., Hou, W., Yi, W., & Xu, H. (2023) · Acta Pharmaceutica Sinica B · doi:10.1016/j.apsb.2023.10.001 · Cited by 91 · see citing works
A Chemistry for Incorporation of Selenium into DNA‐Encoded Libraries
Xu, H., Gu, Y., Zhang, S., Xiong, H., Ma, F., Lu, F., Ji, Q., Liu, L., Ma, P., Hou, W., et al. (2020) · Angewandte Chemie International Edition · doi:10.1002/anie.202003595 · Cited by 90 · see citing works
Self-citationWestphal, M. V., Hudson, L., Mason, J. W., Pradeilles, J. A., Zécri, F. J., Briner, K., & Schreiber, S. L. (2020) · Journal of the American Chemical Society · doi:10.1021/jacs.9b13186 · Cited by 89 · see citing works
Future challenges with DNA-encoded chemical libraries in the drug discovery domain
Zhao, G., Huang, Y., Zhou, Y., Li, Y., & Li, X. (2019) · Expert Opinion on Drug Discovery · doi:10.1080/17460441.2019.1614559 · Cited by 86 · see citing works
Encoded Library Technologies as Integrated Lead Finding Platforms for Drug Discovery
Ottl, J., Leder, L., Schaefer, J. V., & Dumelin, C. E. (2019) · Molecules · doi:10.3390/molecules24081629 · Cited by 86 · see citing works
Wang, S., Denton, K. E., Hobbs, K., Weaver, T., McFarlane, J. M. B., Connelly, K. E., Gignac, M. C., Milosevich, N., Hof, F. A., Paci, I., et al. (2019) · ACS Chemical Biology · doi:10.1021/acschembio.9b00654 · Cited by 85 · see citing works
Optimizing synthetic nucleic acid and protein nanocarriers: The chemical evolution approach
Freitag, F., & Wagner, E. (2020) · Advanced Drug Delivery Reviews · doi:10.1016/j.addr.2020.03.005 · Cited by 82 · see citing works
Rui, H., Ashton, K. S., Min, J., Wang, C. W., & Potts, P. R. (2023) · RSC Chemical Biology · doi:10.1039/d2cb00207h · Cited by 83 · see citing works
Badir, S. O., Sim, J., Billings, K., Csakai, A., Zhang, X., Dong, W., & Molander, G. A. (2020) · Organic Letters · doi:10.1021/acs.orglett.9b04568 · Cited by 72 · see citing works
Macrocyclic DNA-encoded chemical libraries: a historical perspective
Plais, L., & Scheuermann, J. (2021) · RSC Chemical Biology · doi:10.1039/d1cb00161b · Cited by 72 · see citing works
Merging C(sp 3 )–H activation with DNA-encoding
Fan, Z., Zhao, S., Liu, T., Shen, P., Cui, Z., Zhuang, Z., Shao, Q., Chen, J. S., Ratnayake, A. S., Flanagan, M. E., et al. (2020) · Chemical Science · doi:10.1039/d0sc03935g · Cited by 71 · see citing works
Favalli, N., Bassi, G., Pellegrino, C. E., Millul, J., Luca, R. D., Cazzamalli, S., Yang, S., Trenner, A., Mozaffari, N. L., Myburgh, R., et al. (2021) · Nature Chemistry · doi:10.1038/s41557-021-00660-y · Cited by 72 · see citing works
Self-citationCurrent strategies and progress for targeting the “undruggable” transcription factors
Zhuang, J., Liu, Q., Wu, D., & Tie, L. (2022) · Acta Pharmacologica Sinica · doi:10.1038/s41401-021-00852-9 · Cited by 72 · see citing works
Nanomaterials as efficient platforms for sensing DNA
Vikrant, K., Bhardwaj, N., Bhardwaj, S. K., Kim, K., & Deep, A. (2019) · Biomaterials · doi:10.1016/j.biomaterials.2019.05.026 · Cited by 71 · see citing works
DNA Encoded Libraries: A Visitor's Guide
Flood, D. T., Kingston, C., Vantourout, J. C., Dawson, P. E., & Baran, P. S. (2020) · Israel Journal of Chemistry · doi:10.1002/ijch.201900133 · Cited by 70 · see citing works
Wolpaw, A. J., Bayliss, R. W., Büchel, G., Dang, C. V., Eilers, M., Gustafson, W. C., Hansen, G. M., Jura, N., Knapp, S., Lemmon, M. A., et al. (2021) · Cancer Research · doi:10.1158/0008-5472.can-20-3108 · Cited by 70 · see citing works
DNA-Compatible [3 + 2] Nitrone–Olefin Cycloaddition Suitable for DEL Syntheses
Gerry, C. J., Yang, Z., Stasi, M., & Schreiber, S. L. (2019) · Organic Letters · doi:10.1021/acs.orglett.9b00017 · Cited by 67 · see citing works
Corso, A. D., Catalano, M., Schmid, A. S., Scheuermann, J., & Neri, D. (2018) · Angewandte Chemie International Edition · doi:10.1002/anie.201811650 · Cited by 67 · see citing works
Self-citationBaggio, C., Udompholkul, P., Gambini, L., Salem, A. F., Jossart, J. N., Perry, J. J. P., & Pellecchia, M. (2019) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.9b01108 · Cited by 66 · see citing works
RASS‐Enabled S/P−C and S−N Bond Formation for DEL Synthesis
Flood, D. T., Zhang, X., Fu, X., Zhao, Z., Asai, S., Sanchez, B. B., Sturgell, E., Vantourout, J. C., Richardson, P., Flanagan, M. E., et al. (2020) · Angewandte Chemie International Edition · doi:10.1002/anie.201915493 · Cited by 64 · see citing works
Benhamou, R. I., Suresh, B. M., Tong, Y., Cochrane, W. G., Cavett, V. J., Vézina‐Dawod, S., Abegg, D., Childs‐Disney, J. L., Adibekian, A., Paegel, B. M., et al. (2022) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2114971119 · Cited by 62 · see citing works
Discovery of De Novo Macrocyclic Peptides by Messenger RNA Display
Peacock, H., & Suga, H. (2021) · Trends in Pharmacological Sciences · doi:10.1016/j.tips.2021.02.004 · Cited by 61 · see citing works
Palladium-Promoted DNA-Compatible Heck Reaction
Wang, X., Sun, H., Liu, J., Zhong, W., Zhang, M., Zhou, H., Dai, D., & Lu, X. (2019) · Organic Letters · doi:10.1021/acs.orglett.8b03926 · Cited by 59 · see citing works
Navigating the DNA encoded libraries chemical space
Martín, A. V., Nicolaou, C. A., & Toledo, M. Á. (2020) · Communications Chemistry · doi:10.1038/s42004-020-00374-1 · Cited by 59 · see citing works
Beato, E. D. P., Priego, J., Gironda-Martínez, A., González‐Pérez, F., Benavides, J., de Blas, J., Martín-Ortega, M. D., Toledo, M. Á., Ezquerra, J., & Torrado, A. (2019) · ACS Combinatorial Science · doi:10.1021/acscombsci.8b00142 · Cited by 58 · see citing works
Optimization of PROTAC Ternary Complex Using DNA Encoded Library Approach
Chen, Q., Liu, C., Wang, W., Meng, X., Cheng, X., Li, X.-Y., Cai, L., Luo, L., He, X., Qu, H., et al. (2023) · ACS Chemical Biology · doi:10.1021/acschembio.2c00797 · Cited by 55 · see citing works
Radical C–H Sulfonation of Arenes: Its Applications on Bioactive and DNA-Encoded Molecules
Zhang, Y., Xia, S., Shi, W., Lin, B., Su, X., Lu, W., Wu, X., Wang, X., Lu, X., Yan, M., et al. (2022) · Organic Letters · doi:10.1021/acs.orglett.2c03077 · Cited by 56 · see citing works
Chen, Y., Faver, J. C., Ku, A. F., Miklóssy, G., Riehle, K. P., Bohren, K. M., Ucisik, M. N., Matzuk, M. M., Yu, Z., & Simmons, N. (2020) · Bioconjugate Chemistry · doi:10.1021/acs.bioconjchem.9b00863 · Cited by 56 · see citing works
DNA‐Encoded Libraries: Towards Harnessing their Full Power with Darwinian Evolution
Dockerill, M., & Winssinger, N. (2022) · Angewandte Chemie International Edition · doi:10.1002/anie.202215542 · Cited by 56 · see citing works
Fan, Y., Feng, R., Zhang, X., Wang, Z., Xiong, F., Zhang, S., Zhong, Z., Yu, H., Zhang, Q., Zhang, Z., et al. (2024) · Acta Pharmaceutica Sinica B · doi:10.1016/j.apsb.2024.04.006 · Cited by 55 · see citing works
Favalli, N., Bassi, G., Zanetti, T., Scheuermann, J., & Neri, D. (2019) · Helvetica Chimica Acta · doi:10.1002/hlca.201900033 · Cited by 54 · see citing works
Self-citationYen‐Pon, E., Li, L., Levitre, G., Majhi, J., McClain, E. J., Voight, E. A., Crane, E. A., & Molander, G. A. (2022) · Journal of the American Chemical Society · doi:10.1021/jacs.2c03025 · Cited by 53 · see citing works
Jiang, L., Liu, S., Jia, X., Gong, Q., Wen, X., Lu, W., Yang, J., Wu, X., Wang, X., Suo, Y., et al. (2023) · Journal of the American Chemical Society · doi:10.1021/jacs.3c08852 · Cited by 52 · see citing works
Favalli, N., Biendl, S., Hartmann, M., Piazzi, J., Sladojevich, F., Gräslund, S., Brown, P. J., Näreoja, K., Schuler, H., Scheuermann, J., et al. (2018) · ChemMedChem · doi:10.1002/cmdc.201800193 · Cited by 53 · see citing works
Self-citationEvolution of the Selection Methods of DNA-Encoded Chemical Libraries
Song, Y., & Li, X. (2021) · Accounts of Chemical Research · doi:10.1021/acs.accounts.1c00375 · Cited by 52 · see citing works
Xie, J., Wang, S., Ma, P., Ma, F., Li, J., Wang, W., Lu, F., Xiong, H., Gu, Y., Zhang, S., et al. (2020) · iScience · doi:10.1016/j.isci.2020.101197 · Cited by 52 · see citing works
Self-citationA DNA‐Encoded Chemical Library Based on Peptide Macrocycles
Onda, Y., Bassi, G., Elsayed, A., Ulrich, F., Oehler, S., Plais, L., Scheuermann, J., & Neri, D. (2021) · Chemistry - A European Journal · doi:10.1002/chem.202005423 · Cited by 52 · see citing works
Self-citationAbiotic peptides as carriers of information for the encoding of small-molecule library synthesis
Rössler, S. L., Grob, N. M., Buchwald, S. L., & Pentelute, B. L. (2023) · Science · doi:10.1126/science.adf1354 · Cited by 51 · see citing works
Second generation DNA-encoded dynamic combinatorial chemical libraries
Reddavide, F. V., Cui, M., Lin, W., Fu, N., Heiden, S., Andrade, H., Thompson, M., & Zhang, Y. (2019) · Chemical Communications · doi:10.1039/c9cc01429b · Cited by 51 · see citing works
Beyond protein binding: recent advances in screening DNA-encoded libraries
Kodadek, T. J., Paciaroni, N. G., Balzarini, M., & Dickson, P. (2019) · Chemical Communications · doi:10.1039/c9cc06256d · Cited by 50 · see citing works
Bassi, G., Favalli, N., Vuk, M., Catalano, M., Martinelli, A. L., Trenner, A., Porro, A., Yang, S., Tham, C. L., Moroglu, M., et al. (2020) · Advanced Science · doi:10.1002/advs.202001970 · Cited by 50 · see citing works
Self-citationSelection of DNA‐Encoded Dynamic Chemical Libraries for Direct Inhibitor Discovery
Deng, Y., Peng, J., Xiong, F., Song, Y., Zhou, Y., Zhang, J., Lam, F. S., Xie, C., Shen, W., Huang, Y., et al. (2020) · Angewandte Chemie International Edition · doi:10.1002/anie.202005070 · Cited by 49 · see citing works
Quantitative Assessment of Affinity Selection Performance by Using DNA‐Encoded Chemical Libraries
Sannino, A., Gabriele, E., Bigatti, M., Mulatto, S., Piazzi, J., Scheuermann, J., Neri, D., Donckèle, E. J., & Samain, F. (2018) · ChemBioChem · doi:10.1002/cbic.201800766 · Cited by 49 · see citing works
Self-citationHou, W., Zhang, Y., Huang, F., Chen, W., Gu, Y., Wang, Y., Pang, J., Dong, H., Pan, K., Zhang, S., et al. (2024) · Angewandte Chemie International Edition · doi:10.1002/anie.202318534 · Cited by 48 · see citing works
DNA-Encoded Combinatorial Library of Macrocyclic Peptoids
Shin, M. H., Lee, K., & Lim, H. (2019) · Bioconjugate Chemistry · doi:10.1021/acs.bioconjchem.9b00628 · Cited by 48 · see citing works
Vummidi, B. R., Soler, L. F., Daguer, J., Dockerill, M., Barluenga, S., & Winssinger, N. (2021) · Nature Chemistry · doi:10.1038/s41557-021-00829-5 · Cited by 48 · see citing works
Kolusu, S. R. N., & Nappi, M. (2022) · Chemical Science · doi:10.1039/d2sc01621d · Cited by 47 · see citing works
Zhou, Z., Gu, Y., Wu, L., Wang, Y., Xu, H., Ma, L., Zhang, Z., Zhao, J., Zhang, W., Peng, W., et al. (2023) · Chem · doi:10.1016/j.chempr.2023.07.022 · Cited by 47 · see citing works
Recent advances in DNA-encoded libraries
Gao, Y., Liu, J., Huang, S., Du, N., Zhang, G., & Li, Y. (2025) · Chemical Communications · doi:10.1039/d5cc02904j · Cited by 47 · see citing works
Inverse-Electron-Demand Diels–Alder Reactions for the Synthesis of Pyridazines on DNA
Li, H., Sun, Z. C., Wu, W., Wang, X., Zhang, M., Lu, X., Zhong, W., & Dai, D. (2018) · Organic Letters · doi:10.1021/acs.orglett.8b03114 · Cited by 46 · see citing works
Zhao, G., Zhong, S., Zhang, G., Li, Y., & Li, Y. (2021) · Angewandte Chemie International Edition · doi:10.1002/anie.202115157 · Cited by 46 · see citing works
Carbohydrate–DNA Conjugation Enabled by Glycosyl Radicals Generated from Glycosyl Sulfinates
Zeng, H., Li, Y., Wu, R., Liu, D., Zhang, Y., Xu, S., & Niu, D. (2023) · Organic Letters · doi:10.1021/acs.orglett.3c00833 · Cited by 46 · see citing works
Functionalization of DNA-Tagged Alkenes with Diazo Compounds via Photocatalysis
Fu, X., Tang, J., Hua, R., Li, X., Kang, Z., Qiu, H., & Hu, W. (2022) · Organic Letters · doi:10.1021/acs.orglett.2c00516 · Cited by 46 · see citing works
Puglioli, S., Schmidt, E., Pellegrino, C. E., Prati, L., Oehler, S., Luca, R. D., Galbiati, A., Comacchio, C., Nadal, L., Scheuermann, J., et al. (2022) · Chem · doi:10.1016/j.chempr.2022.10.006 · Cited by 45 · see citing works
Self-citationGironda-Martínez, A., Neri, D., Samain, F., & Donckèle, E. J. (2019) · Organic Letters · doi:10.1021/acs.orglett.9b03726 · Cited by 46 · see citing works
Self-citationSolid-phase synthesis of DNA-encoded libraries via an “aldehyde explosion” strategy
Paciaroni, N. G., Ndungu, J. M., & Kodadek, T. J. (2020) · Chemical Communications · doi:10.1039/d0cc01474e · Cited by 45 · see citing works
Scanning Protein Surfaces with DNA‐Encoded Libraries
Kunig, V. B. K., Potowski, M., Škopić, M. K., & Brunschweiger, A. (2020) · ChemMedChem · doi:10.1002/cmdc.202000869 · Cited by 43 · see citing works
Liu, S., Qi, J., Lu, W., Wang, X., & Lu, X. (2021) · Organic Letters · doi:10.1021/acs.orglett.0c04118 · Cited by 45 · see citing works
Wang, S., Shi, X., Li, J., Huang, Q., Ji, Q., Yao, Y., Wang, T., Liu, L., Ye, M., Deng, Y., et al. (2022) · Advanced Science · doi:10.1002/advs.202201258 · Cited by 44 · see citing works
Highly pure DNA-encoded chemical libraries by dual-linker solid-phase synthesis
Keller, M., Petrov, D. D., Gloger, A., Dietschi, B., Jobin, K., Gradinger, T. B., Martinelli, A. L., Plais, L., Onda, Y., Neri, D., et al. (2024) · Science · doi:10.1126/science.adn3412 · Cited by 44 · see citing works
Self-citationDevelopments in Photoredox-Mediated Alkylation for DNA-Encoded Libraries
Patel, S., Badir, S. O., & Molander, G. A. (2020) · Trends in Chemistry · doi:10.1016/j.trechm.2020.11.010 · Cited by 44 · see citing works
Homogeneous and Functional Group Tolerant Ring-Closing Metathesis for DNA-Encoded Chemical Libraries
Monty, O. B. C., Nyshadham, P., Bohren, K. M., Palaniappan, M., Matzuk, M. M., Young, D. W., & Simmons, N. (2020) · ACS Combinatorial Science · doi:10.1021/acscombsci.9b00199 · Cited by 43 · see citing works
Oehler, S., Lucaroni, L., Migliorini, F., Elsayed, A., Prati, L., Puglioli, S., Matasci, M., Schira, K., Scheuermann, J., Yudin, D., et al. (2023) · Nature Chemistry · doi:10.1038/s41557-023-01257-3 · Cited by 42 · see citing works
Self-citationSynthesis of Multifunctional 2-Aminobenzimidazoles on DNA via Iodine-Promoted Cyclization
Su, L., Feng, J., Peng, T., Wan, J., Fan, J., Li, J., O’Connell, J. C., Lancia, D. R., Franklin, G. J., & Liu, G. (2020) · Organic Letters · doi:10.1021/acs.orglett.9b04578 · Cited by 41 · see citing works
- Authors
- Neri, D., & Lerner, R. A.
- Affiliations
- ETH Zurich (CH)
- Scripps Research Institute (US)
- Venue
- Annual Review of Biochemistry
- Publisher
- Annual Reviews
- Published
- 2018-06-20
- Volume
- 87
- Issue
- 1
- Pages
- 479-502
- ISSN
- 0066-4154 (ISSN-L)
- 1545-4509
- PMC
- PMC6080696
- OpenAlex
- W2782995788
- Cited by
- 364
- References
- 97
- Citations by year
- 2026: 26 · 2025: 32 · 2024: 27 · 2023: 34 · 2022: 42 · 2021: 63 · 2020: 81 · 2019: 46 · 2018: 13
- FWCI
- 5.03
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Annual Review of Biochemistry (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Funders
- National Science Foundation
- Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (310030B_163479/1, 163479, 160699)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Chemical Synthesis and Analysis
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA and Nucleic Acid Chemistry
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Advanced biosensing and bioanalysis techniques
- Keywords
- DNA-encoded libraries, DNA barcoding, combinatorial libraries, protein-ligand binding, ligand discovery, library screening, molecular identification
- MeSH terms
- Animals, Humans, Ligands, Gene Library, Peptide Library, Combinatorial Chemistry Techniques, Small Molecule Libraries, Drug Discovery
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review