Therapeutics Based on Stop Codon Readthrough
Open accessAbstract
Nonsense suppression therapy encompasses approaches aimed at suppressing translation termination at in-frame premature termination codons (PTCs, also known as nonsense mutations) to restore deficient protein function. In this review, we examine the current status of PTC suppression as a therapy for genetic diseases caused by nonsense mutations. We discuss what is currently known about the mechanism of PTC suppression as well as therapeutic approaches under development to suppress PTCs. The approaches considered include readthrough drugs, suppressor tRNAs, PTC pseudouridylation, and inhibition of nonsense-mediated mRNA decay. We also discuss the barriers that currently limit the clinical application of nonsense suppression therapy and suggest how some of these difficulties may be overcome. Finally, we consider how PTC suppression may play a role in the clinical treatment of genetic diseases caused by nonsense mutations.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The regulatory mechanisms associated with positive genetic interactions among essential genes, which include genetic suppression interactions, are potentially relevant to human genetics.
“The regulatory mechanisms associated with positive genetic interactions among essential genes, which include genetic suppression interactions, are also potentially relevant to human genetics”
From A global genetic interaction network maps a wiring diagram of cellular function (2016) · cites this paper as [47]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Yang, H., Wang, H., Shivalila, C. S., Cheng, A. W., Shi, L., & Jaenisch, R. (2013) · Cell · doi:10.1016/j.cell.2013.08.022 · Cited by 1,596 · see citing works
PTC124 targets genetic disorders caused by nonsense mutations
Welch, E. M., Barton, E. R., Zhuo, J., Tomizawa, Y., Friesen, W. J., Trifillis, P., Paushkin, S. V., Patel, M., Trotta, C. R., Hwang, S., et al. (2007) · Nature · doi:10.1038/nature05756 · Cited by 1,138 · see citing works
Circularization of mRNA by Eukaryotic Translation Initiation Factors
Wells, S. E., Hillner, P. E., Vale, R. D., & Sachs, A. B. (1998) · Molecular Cell · doi:10.1016/s1097-2765(00)80122-7 · Cited by 968 · see citing works
Mendell, J. T., Sharifi, N., Meyers, J. L., Martínez-Murillo, F., & Dietz, H. C. (2004) · Nature Genetics · doi:10.1038/ng1429 · Cited by 880 · see citing works
Universal rules and idiosyncratic features in tRNA identity
Giege, R., Sissler, M., & Florentz, C. (1998) · Nucleic Acids Research · doi:10.1093/nar/26.22.5017 · Cited by 769 · see citing works
Aminoglycoside antibiotics restore dystrophin function to skeletal muscles of mdx mice
Barton-Davis, E. R., Cordier, L., Shoturma, D. I., Leland, S. E., & Sweeney, H. L. (1999) · Journal of Clinical Investigation · doi:10.1172/jci7866 · Cited by 579 · see citing works
Imataka, H., Gradi, A., & Sonenberg, N. (1998) · The EMBO Journal · doi:10.1093/emboj/17.24.7480 · Cited by 572 · see citing works
A faux 3′-UTR promotes aberrant termination and triggers nonsense- mediated mRNA decay
Amrani, N., Ganesan, R., Kervestin, S., Mangus, D. A., Ghosh, S., & Jacobson, A. (2004) · Nature · doi:10.1038/nature03060 · Cited by 533 · see citing works
A meta-analysis of nonsense mutations causing human genetic disease
Mort, M. E., Ivanov, D. K., Cooper, D. N., & Chuzhanova, N. A. (2008) · Human Mutation · doi:10.1002/humu.20763 · Cited by 513 · see citing works
Wilschanski, M. A., Yahav, Y., Yaacov, Y., et al. (2003) · New England Journal of Medicine · doi:10.1056/nejmoa022170 · Cited by 503 · see citing works
Aminoglycoside antibiotics restore CFTR function by overcoming premature stop mutations
Howard, M., Frizzell, R. A., & Bedwell, D. M. (1996) · Nature Medicine · doi:10.1038/nm0496-467 · Cited by 495 · see citing works
Self-citationReilly, S. M., Chiang, S.-H., Decker, S. J., Chang, L. C., Uhm, M., Larsen, M. J., Rubin, J. R., Mowers, J. C., White, N. M. A., Hochberg, I., et al. (2013) · Nature Medicine · doi:10.1038/nm.3082 · Cited by 431 · see citing works
Nonsense-mediated mRNA decay modulates clinical outcome of genetic disease
Khajavi, M., Inoue, K., & Lupski, J. R. (2006) · European Journal of Human Genetics · doi:10.1038/sj.ejhg.5201649 · Cited by 420 · see citing works
Manuvakhova, M., Keeling, K. M., & Bedwell, D. M. (2000) · RNA · doi:10.1017/s1355838200000716 · Cited by 404 · see citing works
Self-citationKerem, E., Hirawat, S., Armoni, S., Yaakov, Y., Shoseyov, D., Cohen, M., Nissim‐Rafinia, M., Blau, H., Rivlin, J., Aviram, M., et al. (2008) · The Lancet · doi:10.1016/s0140-6736(08)61168-x · Cited by 401 · see citing works
Converting nonsense codons into sense codons by targeted pseudouridylation
Karijolich, J. J., & Yu, Y. (2011) · Nature · doi:10.1038/nature10165 · Cited by 391 · see citing works
Mechanisms of Aminoglycoside Ototoxicity and Targets of Hair Cell Protection
Huth, M. E., Ricci, A. J., & Cheng, A. G.-L. (2011) · International Journal of Otolaryngology · doi:10.1155/2011/937861 · Cited by 390 · see citing works
Schweingruber, C., Rufener, S. C., Zünd, D., Yamashita, A., & Mühlemann, O. (2013) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2013.02.005 · Cited by 356 · see citing works
Alkalaeva, E. Z., Pisarev, A. V., Frolova, L. Y., Kisselev, L. L., & Pestova, T. V. (2006) · Cell · doi:10.1016/j.cell.2006.04.035 · Cited by 331 · see citing works
Mechanisms of deadenylation‐dependent decay
Chen, C. A., & Shyu, A. (2010) · Wiley Interdisciplinary Reviews - RNA · doi:10.1002/wrna.40 · Cited by 330 · see citing works
Gehring, N. H., Kunz, J. B., Neu‐Yilik, G., Breit, S., Viegas, M. H., Hentze, M. W., & Kulozik, A. E. (2005) · Molecular Cell · doi:10.1016/j.molcel.2005.08.012 · Cited by 329 · see citing works
Medghalchi, S. M. (2001) · Human Molecular Genetics · doi:10.1093/hmg/10.2.99 · Cited by 316 · see citing works
Eckford, P. D. W., Li, C., Ramjeesingh, M., & Bear, C. E. (2012) · Journal of Biological Chemistry · doi:10.1074/jbc.m112.393637 · Cited by 311 · see citing works
Linde, L., Boelz, S., Nissim‐Rafinia, M., et al. (2007) · Journal of Clinical Investigation · doi:10.1172/jci28523 · Cited by 300 · see citing works
Tarpey, P. S., Raymond, F. L., Nguyen, L. S., Rodriguez, J. D., Hackett, A., Vandeleur, L., Smith, R., Shoubridge, C., Edkins, S., Stevens, C., et al. (2007) · Nature Genetics · doi:10.1038/ng2100 · Cited by 293 · see citing works
Weischenfeldt, J., Damgaard, I., Bryder, D., Theilgaard-Mönch, K., Thoren, L. A., Nielsen, F. C., Jacobsen, S. E. W., Nerlov, C., & Porse, B. T. (2008) · Genes & Development · doi:10.1101/gad.468808 · Cited by 288 · see citing works
Translational termination efficiency in mammals is influenced by the base following the stop codon
McCaughan, K. K., Brown, C. M., Dalphin, M. E., Berry, M. J., & Tate, W. P. (1995) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.92.12.5431 · Cited by 284 · see citing works
Gentamicin‐induced readthrough of stop codons in duchenne muscular dystrophy
Malik, V., Rodino‐Klapac, L. R., Viollet, L., Wall, C., King, W. M., Al‐Dahhak, R., Lewis, S., Shilling, C. J., Kota, J., Serrano, C., et al. (2010) · Annals of Neurology · doi:10.1002/ana.22024 · Cited by 280 · see citing works
Du, M., Liu, X., Welch, E. M., Hirawat, S., Peltz, S. W., & Bedwell, D. M. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0711795105 · Cited by 257 · see citing works
Self-citationClancy, J. P., Bebők, Z., Ruiz, F. E., et al. (2001) · American Journal of Respiratory and Critical Care Medicine · doi:10.1164/ajrccm.163.7.2004001 · Cited by 253 · see citing works
Sermet‐Gaudelus, I., Boeck, K. D., Casimir, G. J., Vermeulen, F. L., Leal, T., Mogenet, A., Roussel, D., Fritsch, J., Hanssens, L. S., Hirawat, S., et al. (2010) · American Journal of Respiratory and Critical Care Medicine · doi:10.1164/rccm.201001-0137oc · Cited by 248 · see citing works
Hirawat, S., Welch, E. M., Elfring, G. L., Northcutt, V. J., Paushkin, S. V., Hwang, S., Leonard, E. M., Almstead, N. G., Ju, W., Peltz, S. W., et al. (2007) · The Journal of Clinical Pharmacology · doi:10.1177/0091270006297140 · Cited by 243 · see citing works
Laurent, G., Carlier, M.-B., Rollman, B., et al. (1982) · Biochemical Pharmacology · doi:10.1016/0006-2952(82)90303-3 · Cited by 241 · see citing works
Phenotypic suppression of nonsense mutants in yeast by aminoglycoside antibiotics
PALMER, E., Wilhelm, J. M., & Sherman, F. (1979) · Nature · doi:10.1038/277148a0 · Cited by 236 · see citing works
An alternative branch of the nonsense‐mediated decay pathway
Chan, W.-K., Huang, L., Gudikote, J. P., Chang, Y.-F., Imam, J. S., MacLean, J. A., & Wilkinson, M. (2007) · The EMBO Journal · doi:10.1038/sj.emboj.7601628 · Cited by 222 · see citing works
Phase II studies of nebulised Arikace in CF patients withPseudomonas aeruginosainfection
Clancy, J. P., Dupont, L., Konstan, M. W., et al. (2013) · Thorax · doi:10.1136/thoraxjnl-2012-202230 · Cited by 222 · see citing works
NMD: RNA biology meets human genetic medicine
Bhuvanagiri, M., Schlitter, A. M., Hentze, M. W., & Kulozik, A. E. (2010) · Biochemical Journal · doi:10.1042/bj20100699 · Cited by 216 · see citing works
Prevention of noise- and drug-induced hearing loss with d-methionine
Campbell, K. C. M., Meech, R. P., Klemens, J. J., Gerberi, M. T., Dyrstad, S. W., Larsen, D. L., Mitchell, D. L., El-Azizi, M., Verhulst, S. J., & Hughes, L. F. (2007) · Hearing Research · doi:10.1016/j.heares.2006.11.012 · Cited by 212 · see citing works
Mechanism of PTC124 activity in cell-based luciferase assays of nonsense codon suppression
Auld, D. S., Thorne, N., Maguire, W. F., et al. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0813345106 · Cited by 208 · see citing works
Chronic ataluren (PTC124) treatment of nonsense mutation cystic fibrosis
Wilschanski, M. A., Miller, L. L., Shoseyov, D., Blau, H., Rivlin, J., Aviram, M., Cohen, M., Armoni, S., Yaakov, Y., Pugatsch, T., et al. (2011) · European Respiratory Journal · doi:10.1183/09031936.00120910 · Cited by 205 · see citing works
Current status of pharmaceutical and genetic therapeutic approaches to treat DMD.
Pichavant, C., Aartsma-Rus, A., Clemens, P., Davies, K., Dickson, G., Takeda, S., Wilton, S., Wolff, J., Wooddell, C., Xiao, X., et al. (2011) · Molecular Therapy · doi:10.1038/mt.2011.59 · Cited by 202 · see citing works
Basis for prokaryotic specificity of action of aminoglycoside antibiotics
Recht, M. I., Douthwaite, S. R., & Puglisi, J. D. (1999) · The EMBO Journal · doi:10.1093/emboj/18.11.3133 · Cited by 201 · see citing works
GTP Hydrolysis by eRF3 Facilitates Stop Codon Decoding during Eukaryotic Translation Termination
Salas-Marco, J., & Bedwell, D. M. (2004) · Molecular and Cellular Biology · doi:10.1128/mcb.24.17.7769-7778.2004 · Cited by 200 · see citing works
Self-citationMcIlwain, D. R., Pan, Q., Reilly, P. T., Elia, A., McCracken, S. A., Wakeham, A. C., Itie-YouTen, A., Blencowe, B. J., & Mak, T. W. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1007336107 · Cited by 197 · see citing works
Ataluren as an Agent for Therapeutic Nonsense Suppression
Peltz, S. W., Morsy, M., Welch, E. M., & Jacobson, A. (2012) · Annual Review of Medicine · doi:10.1146/annurev-med-120611-144851 · Cited by 194 · see citing works
Nudelman, I., Rebibo-Sabbah, A., Cherniavsky, M., Белахов, В. В., Hainrichson, M., Chen, F., Schacht, J., Pilch, D. S., Ben‐Yosef, T., & Baasov, T. (2009) · Journal of Medicinal Chemistry · doi:10.1021/jm801640k · Cited by 190 · see citing works
Durand, S., Cougot, N., Mahuteau‐Betzer, F., Nguyen, C.-H., Grierson, D. S., Bertrand, É., Tazi, J., & Lejeune, F. (2007) · The Journal of Cell Biology · doi:10.1083/jcb.200611086 · Cited by 189 · see citing works
Du, M., Jones, J. R., Lanier, J., et al. (2002) · Journal of Molecular Medicine · doi:10.1007/s00109-002-0363-1 · Cited by 181 · see citing works
Cystic Fibrosis Transmembrane Regulator Correctors and PotentiatorsPreprint
Rowe, S. M., & Verkman, A. S. (2013) · Cold Spring Harbor Perspectives in Medicine · doi:10.1101/cshperspect.a009761 · Cited by 176 · see citing works
Piotrowska, E., Jakóbkiewicz‐Banecka, J., Barańska, S., et al. (2006) · European Journal of Human Genetics · doi:10.1038/sj.ejhg.5201623 · Cited by 175 · see citing works
Molecular basis for the high-affinity binding and stabilization of firefly luciferase by PTC124
Auld, D. S., Lovell, S., Thorne, N., Lea, W., Maloney, D. J., Shen, M., Rai, G., Battaile, K. P., Thomas, C. J., Simeonov, A. M., et al. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0909141107 · Cited by 173 · see citing works
Gentamicin administration in Duchenne patients with premature stop codon. Preliminary results.
Politano, L., Nigro, G., Nigro, V., et al. (2003) · PubMed · Cited by 171 · see citing works
Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3′ UTRs
Zünd, D., Gruber, A. R., Zavolan, M., & Mühlemann, O. (2013) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.2635 · Cited by 171 · see citing works
Dystrophin levels as low as 30% are sufficient to avoid muscular dystrophy in the human
Neri, M., Torelli, S., Brown, S., Ugo, I., Sabatelli, P., Merlini, L., Spitali, P., Rimessi, P., Gualandi, F., Sewry, C. A., et al. (2007) · Neuromuscular Disorders · doi:10.1016/j.nmd.2007.07.005 · Cited by 169 · see citing works
Temple, G. F., Dozy, A. M., Roy, K. L., & Kan, Y. W. (1982) · Nature · doi:10.1038/296537a0 · Cited by 165 · see citing works
Nguyen, L. S., Kim, H., Rosenfeld, J. A., Shen, Y., Gusella, J. F., Lacassie, Y., Layman, L. C., Shaffer, L. G., & Gécz, J. (2013) · Human Molecular Genetics · doi:10.1093/hmg/ddt035 · Cited by 164 · see citing works
Liposome-encapsulated aminoglycosides in pre-clinical and clinical studies
Schiffelers, R. (2001) · Journal of Antimicrobial Chemotherapy · doi:10.1093/jac/48.3.333 · Cited by 163 · see citing works
Finkel, R. S. (2010) · Journal of Child Neurology · doi:10.1177/0883073810371129 · Cited by 161 · see citing works
Rescue of nonsense mutations by amlexanox in human cells
Gonzalez-Hilarion, S., Beghyn, T. B., Jia, J., Debreuck, N., Berte, G., Mamchaoui, K., Mouly, V., Gruenert, D. C., Deprez, B. P., & Lejeune, F. (2012) · Orphanet Journal of Rare Diseases · doi:10.1186/1750-1172-7-58 · Cited by 159 · see citing works
Experimental Gentamicin Nephrotoxicity and Agents that Modify it: A Mini-Review of Recent Research
Ali, B. H., Za’abi, M. A., Blunden, G., & Nemmar, A. (2011) · Basic & Clinical Pharmacology & Toxicology · doi:10.1111/j.1742-7843.2011.00728.x · Cited by 150 · see citing works
Cosson, B., Couturier, A., Chabelskaya, S. V., Kiktev, D. A., Inge-Vechtomov, S. G., Philippe, M., & Zhouravleva, G. A. (2002) · Molecular and Cellular Biology · doi:10.1128/mcb.22.10.3301-3315.2002 · Cited by 150 · see citing works
Cassan, M., & Rousset, J. (2001) · BMC Molecular Biology · doi:10.1186/1471-2199-2-3 · Cited by 146 · see citing works
Metze, S., Herzog, V. A., Ruepp, M., & Mühlemann, O. (2013) · RNA · doi:10.1261/rna.038893.113 · Cited by 141 · see citing works
Evolutionary optimization of speed and accuracy of decoding on the ribosome
Wohlgemuth, I., Pohl, C., Mittelstaet, J., Konevega, A. L., & Rodnina, M. V. (2011) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2011.0138 · Cited by 141 · see citing works
Nonaminoglycoside compounds induce readthrough of nonsense mutations
Du, L., Damoiseaux, R. D., Nahas, S., Gao, K., Hu, H., Pollard, J. M., Goldstine, J. V., Jung, M. E., Henning, S. M., Bertoni, C., et al. (2009) · The Journal of Experimental Medicine · doi:10.1084/jem.20081940 · Cited by 139 · see citing works
Pharmaceutical therapies to recode nonsense mutations in inherited diseases
Lee, H.-L. R., & Dougherty, J. P. (2012) · Pharmacology & Therapeutics · doi:10.1016/j.pharmthera.2012.07.007 · Cited by 138 · see citing works
McElroy, S. P., Nomura, T., Torrie, L. S., et al. (2013) · PLoS Biology · doi:10.1371/journal.pbio.1001593 · Cited by 138 · see citing works
A comprehensive analysis of translational missense errors in the yeast Saccharomyces cerevisiae
Kramer, E. B., Vallabhaneni, H., Mayer, L. M., & Farabaugh, P. J. (2010) · RNA · doi:10.1261/rna.2201210 · Cited by 134 · see citing works
Structural origins of aminoglycoside specificity for prokaryotic ribosomes
Lynch, S. R., & Puglisi, J. D. (2001) · Journal of Molecular Biology · doi:10.1006/jmbi.2000.4420 · Cited by 133 · see citing works
Nudelman, I., Atia-Glikin, D., Smolkin, B., Hainrichson, M., Белахов, В. В., & Baasov, T. (2010) · Bioorganic & Medicinal Chemistry · doi:10.1016/j.bmc.2010.03.060 · Cited by 126 · see citing works
Polyaspartic Acid Prevents Experimental Aminoglycoside Nephrotoxicity
Gilbert, D. N., Wood, C. A., Kohlhepp, S. J., et al. (1989) · The Journal of Infectious Diseases · doi:10.1093/infdis/159.5.945 · Cited by 125 · see citing works
Viegas, M. H., Gehring, N. H., Breit, S., Hentze, M. W., & Kulozik, A. E. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkm461 · Cited by 124 · see citing works
Negamycin Restores Dystrophin Expression in Skeletal and Cardiac Muscles of mdx Mice
Arakawa, M. (2003) · The Journal of Biochemistry · doi:10.1093/jb/mvg203 · Cited by 122 · see citing works
Attenuation of Nonsense-Mediated mRNA Decay Enhances In Vivo Nonsense Suppression
Keeling, K. M., Wang, D., Dai, Y., et al. (2013) · PLoS ONE · doi:10.1371/journal.pone.0060478 · Cited by 120 · see citing works
Self-citationSalas-Marco, J., & Bedwell, D. M. (2005) · Journal of Molecular Biology · doi:10.1016/j.jmb.2005.03.025 · Cited by 116 · see citing works
Self-citationNew animal models of cystic fibrosis
Keiser, N. W., & Engelhardt, J. F. (2011) · Current Opinion in Pulmonary Medicine · doi:10.1097/mcp.0b013e32834b14c9 · Cited by 114 · see citing works
Makino, H., Saijo, T., Ashida, Y., et al. (2009) · International Archives of Allergy and Applied Immunology · doi:10.1159/000234292 · Cited by 112 · see citing works
Qian, Y., & Guan, M. (2009) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.00965-08 · Cited by 112 · see citing works
Correction of Nonsense BMPR2 and SMAD9 Mutations by Ataluren in Pulmonary Arterial Hypertension
Drake, K. M., Dunmore, B. J., McNelly, L. N., et al. (2013) · American Journal of Respiratory Cell and Molecular Biology · doi:10.1165/rcmb.2013-0100oc · Cited by 112 · see citing works
Pharmacologic therapy for stop mutations: how much CFTR activity is enough?
Kerem, E. (2004) · Current Opinion in Pulmonary Medicine · doi:10.1097/01.mcp.0000141247.22078.46 · Cited by 107 · see citing works
Amlexanox for the Treatment of Recurrent Aphthous Ulcers
Bell, J. B. (2005) · Clinical Drug Investigation · doi:10.2165/00044011-200525090-00001 · Cited by 102 · see citing works
Brendel, C., Белахов, В. В., Werner, H. B., Wegener, E., Gärtner, J., Nudelman, I., Baasov, T., & Huppke, P. (2010) · Journal of Molecular Medicine · doi:10.1007/s00109-010-0704-4 · Cited by 102 · see citing works
Goldmann, T., Overlack, N., Möller, F., Белахов, В. В., van Wyk, M., Baasov, T., Uwe Wolfrum, B., & Nagel‐Wolfrum, K. (2012) · EMBO Molecular Medicine · doi:10.1002/emmm.201201438 · Cited by 102 · see citing works
Inhibition of nonsense‐mediated mRNA decay rescues the phenotype in Ullrich's disease
Usuki, F., Yamashita, A., Higuchi, I., Ohnishi, T., Shiraishi, T., Osame, M., & Ohno, S. (2004) · Annals of Neurology · doi:10.1002/ana.20107 · Cited by 99 · see citing works
PTC124-Mediated Translational Readthrough of a Nonsense Mutation Causing Usher Syndrome Type 1C
Goldmann, T., Overlack, N., Wolfrum, U., et al. (2011) · Human Gene Therapy · doi:10.1089/hum.2010.067 · Cited by 99 · see citing works
Ibba, M., Hong, K., Sherman, J. M., et al. (1996) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.93.14.6953 · Cited by 98 · see citing works
Nonsense-mediated mRNA decay occurs during eIF4F-dependent translation in human cells
Durand, S., & Lykke‐Andersen, J. (2013) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.2575 · Cited by 97 · see citing works
Usuki, F., Yamashita, A., Kashima, I., Higuchi, I., Osame, M., & Ohno, S. (2006) · Molecular Therapy · doi:10.1016/j.ymthe.2006.04.011 · Cited by 97 · see citing works
Wilhelm, J. M., Jessop, J. J., & Pettitt, S. E. (1978) · Biochemistry · doi:10.1021/bi00600a002 · Cited by 97 · see citing works
eIF4E-bound mRNPs are substrates for nonsense-mediated mRNA decay in mammalian cells
Rufener, S. C., & Mühlemann, O. (2013) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.2576 · Cited by 97 · see citing works
Zilberberg, A., Lahav, L., & Rosin‐Arbesfeld, R. (2009) · Gut · doi:10.1136/gut.2008.169805 · Cited by 97 · see citing works
Mattis, V. B., Ebert, A. D., Fosso, M. Y., Chang, C. T., & Lorson, C. L. (2009) · Human Molecular Genetics · doi:10.1093/hmg/ddp333 · Cited by 93 · see citing works
Tate, W. P., Poole, E. S., Horsfield, J. A., et al. (1995) · Biochemistry and Cell Biology · doi:10.1139/o95-118 · Cited by 91 · see citing works
Sangkuhl, K., Schulz, A. M., Römpler, H., Yun, J. S., Wess, J., & Schöneberg, T. (2004) · Human Molecular Genetics · doi:10.1093/hmg/ddh105 · Cited by 90 · see citing works
Improving on nature: antibiotics that target the ribosome
Sutcliffe, J. A. (2005) · Current Opinion in Microbiology · doi:10.1016/j.mib.2005.08.004 · Cited by 89 · see citing works
Bunge, S., Clements, P. R., Byers, S., et al. (1998) · Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease · doi:10.1016/s0925-4439(98)00046-5 · Cited by 85 · see citing works
Aminoglycoside suppression of nonsense mutations in severe hemophilia
James, P. D., Raut, S., Rivard, G., Poon, M., Warner, M., McKenna, S., Leggo, J., & Lillicrap, D. (2005) · Blood · doi:10.1182/blood-2005-03-1307 · Cited by 85 · see citing works
Role of SMG ‐1‐mediated U pf1 phosphorylation in mammalian nonsense‐mediated m RNA decay
Yamashita, A. (2013) · Genes to Cells · doi:10.1111/gtc.12033 · Cited by 84 · see citing works
Mouse models of cystic fibrosis
Davidson, D. J., & Rolfe, M. (2001) · Trends in Genetics · doi:10.1016/s0168-9525(01)02452-0 · Cited by 83 · see citing works
Aminoglycosides as Potential Pharmacogenetic Agents in the Treatment of Hailey–Hailey Disease
Kellermayer, R., Szigeti, R. G., Keeling, K. M., et al. (2005) · Journal of Investigative Dermatology · doi:10.1038/sj.jid.5700031 · Cited by 82 · see citing works
Self-citationNudelman, I., Rebibo-Sabbah, A., Shallom-Shezifi, D., Hainrichson, M., Stahl, I., Ben‐Yosef, T., & Baasov, T. (2006) · Bioorganic & Medicinal Chemistry Letters · doi:10.1016/j.bmcl.2006.09.013 · Cited by 81 · see citing works
Mistranslation in a eucaryotic organism
Palmer, E., & Wilhelm, J. M. (1978) · Cell · doi:10.1016/0092-8674(78)90201-5 · Cited by 79 · see citing works
Du, M., Keeling, K. M., Fan, L., et al. (2006) · Journal of Molecular Medicine · doi:10.1007/s00109-006-0045-5 · Cited by 77 · see citing works
Self-citationWang, D., Belakhov, V. V., Kandasamy, J., et al. (2011) · Molecular Genetics and Metabolism · doi:10.1016/j.ymgme.2011.10.005 · Cited by 75 · see citing works
Allamand, V., Bidou, L., Arakawa, M., Floquet, C., Shiozuka, M., Paturneau-Jouas, M., Gartioux, C., Butler-Browne, G. S., Mouly, V., Rousset, J., et al. (2007) · The Journal of Gene Medicine · doi:10.1002/jgm.1140 · Cited by 74 · see citing works
Rebibo-Sabbah, A., Nudelman, I., Ahmed, Z. M., Baasov, T., & Ben‐Yosef, T. (2007) · Human Genetics · doi:10.1007/s00439-007-0410-7 · Cited by 74 · see citing works
Rowe, S. M., Sloane, P. A., Tang, L. P., Backer, K., Mazur, M., Buckley-Lanier, J. A., Nudelman, I., Белахов, В. В., Bebők, Z., Schwiebert, E. M., et al. (2011) · Journal of Molecular Medicine · doi:10.1007/s00109-011-0787-6 · Cited by 74 · see citing works
Self-citationFan-Minogue, H., Du, M., Pisarev, A. V., et al. (2008) · Molecular Cell · doi:10.1016/j.molcel.2008.03.020 · Cited by 70 · see citing works
Chang, C. T., Hui, Y., Elchert, B., et al. (2002) · Organic Letters · doi:10.1021/ol0269042 · Cited by 69 · see citing works
Du, L., Jung, M. E., Damoiseaux, R. D., et al. (2013) · Molecular Therapy · doi:10.1038/mt.2013.150 · Cited by 64 · see citing works
Dranchak, P. K., Pietro, E. D., Snowden, A., Oesch, N., Braverman, N., Steinberg, S. J., & Hacia, J. G. (2010) · Journal of Cellular Biochemistry · doi:10.1002/jcb.22979 · Cited by 62 · see citing works
Suppression of Nonsense Mutations in Cell Culture and Mice by Multimerized Suppressor tRNA Genes
Buvoli, M., Buvoli, A. E., & Leinwand, L. A. (2000) · Molecular and Cellular Biology · doi:10.1128/mcb.20.9.3116-3124.2000 · Cited by 60 · see citing works
Structure of a eukaryotic decoding region A-site RNA
Lynch, S. R., & Puglisi, J. D. (2001) · Journal of Molecular Biology · doi:10.1006/jmbi.2000.4419 · Cited by 60 · see citing works
Sarkar, C., Zhang, Z., & Mukherjee, A. B. (2011) · Molecular Genetics and Metabolism · doi:10.1016/j.ymgme.2011.05.021 · Cited by 59 · see citing works
Tomita, K. (1999) · Nucleic Acids Research · doi:10.1093/nar/27.7.1683 · Cited by 56 · see citing works
Beneficial Read-Through of a USH1C Nonsense Mutation by Designed Aminoglycoside NB30 in the Retina
Goldmann, T., Rebibo-Sabbah, A., Overlack, N., Nudelman, I., Белахов, В. В., Baasov, T., Ben‐Yosef, T., Uwe Wolfrum, B., & Nagel‐Wolfrum, K. (2010) · Investigative Ophthalmology & Visual Science · doi:10.1167/iovs.10-5741 · Cited by 54 · see citing works
Distinct Paths To Stop Codon Reassignment by the Variant-Code Organisms Tetrahymena and Euplotes
Salas-Marco, J., Fan-Minogue, H., Kallmeyer, A. K., et al. (2005) · Molecular and Cellular Biology · doi:10.1128/mcb.26.2.438-447.2006 · Cited by 54 · see citing works
Oussoren, E., Keulemans, J. L. M., van Diggelen, O. P., et al. (2013) · Molecular Genetics and Metabolism · doi:10.1016/j.ymgme.2013.05.016 · Cited by 52 · see citing works
Systemic aminoglycoside treatment in rodent models of retinitis pigmentosa
Guerin, K. I., Gregory, C. Y., Hodges, M., Moosajee, M., Mackay, D. S., Gregory-Evans, K., & Flannery, J. G. (2008) · Experimental Eye Research · doi:10.1016/j.exer.2008.05.016 · Cited by 51 · see citing works
Floquet, C., Rousset, J., & Bidou, L. (2011) · PLoS ONE · doi:10.1371/journal.pone.0024125 · Cited by 50 · see citing works
Binding of aminoglycoside antibiotics to helix 69 of 23S rRNA
Scheunemann, A., Graham, W. D., Vendeix, F. A. P., & Agris, P. F. (2010) · Nucleic Acids Research · doi:10.1093/nar/gkp1253 · Cited by 49 · see citing works
Perturbation of thymocyte development in nonsense-mediated decay (NMD)-deficient mice
Frischmeyer‐Guerrerio, P. A., Montgomery, R. A., Warren, D. S., Cooke, S. K., Lutz, J., Sonnenday, C. J., Guerrerio, A. L., & Dietz, H. C. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1019352108 · Cited by 49 · see citing works
Rescue of Melanocortin 4 Receptor (MC4R) Nonsense Mutations by Aminoglycoside‐Mediated Read‐Through
Brumm, H., Mühlhaus, J., Bolze, F., Scherag, S., Hinney, A., Hebebrand, J., Wiegand, S., Klingenspor, M., Grüters, A., Krude, H., et al. (2011) · Obesity · doi:10.1038/oby.2011.202 · Cited by 46 · see citing works
Wang, B., Yang, Z., Brisson, B. K., Feng, H., Zhang, Z., Welch, E. M., Peltz, S. W., Barton, E. R., Brown, R. H., & Sweeney, H. L. (2010) · Journal of Applied Physiology · doi:10.1152/japplphysiol.01366.2009 · Cited by 45 · see citing works
Nonsense suppression activity of PTC124 (ataluren)
Peltz, S. W., Welch, E. M., Jacobson, A., et al. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0901936106 · Cited by 44 · see citing works
Drug-mediated ototoxicity and tinnitus: alleviation with melatonin.
Reiter, R. J., Tan, D.-X., Korkmaz, A., et al. (2011) · PubMed · Cited by 44 · see citing works
Zhou, Y. H., Jiang, Q., Takahagi, S., et al. (2013) · Journal of Investigative Dermatology · doi:10.1038/jid.2013.234 · Cited by 44 · see citing works
Du, M., Keeling, K. M., Fan, L., et al. (2009) · Journal of Biological Chemistry · doi:10.1074/jbc.m806728200 · Cited by 40 · see citing works
Self-citationPTC124 improves readthrough and increases enzymatic activity of the CPT1A R160X nonsense mutation
Tan, L., Narayan, S. B., Chen, J., et al. (2011) · Journal of Inherited Metabolic Disease · doi:10.1007/s10545-010-9265-5 · Cited by 40 · see citing works
Gentamicin treatment in McArdle disease: Failure to correct myophosphorylase deficiency
Schroers, A., Kley, R. A., Stachon, A., et al. (2006) · Neurology · doi:10.1212/01.wnl.0000194212.31318.fc · Cited by 40 · see citing works
Mechanism of the initiation of mRNA decay: role of eRF3 family G proteins
Hoshino, S.-I. (2012) · Wiley Interdisciplinary Reviews - RNA · doi:10.1002/wrna.1133 · Cited by 39 · see citing works
Bartolomeo, R., Polishchuk, E. V., Volpi, N., et al. (2012) · Journal of Inherited Metabolic Disease · doi:10.1007/s10545-012-9521-y · Cited by 39 · see citing works
Usuki, F., Yamashita, A., Shiraishi, T., Shiga, A., Onodera, O., Higuchi, I., & Ohno, S. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1300654110 · Cited by 38 · see citing works
A mouse model for nonsense mutation bypass therapy shows a dramatic multiday response to geneticin
Yang, C., Feng, J., Song, W., et al. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0610878104 · Cited by 38 · see citing works
Partial Functional Correction of Xeroderma Pigmentosum Group A Cells by Suppressor tRNA
Panchal, R. G., Wang, S., Mcdermott, J., & Link, C. J. (1999) · Human Gene Therapy · doi:10.1089/10430349950017194 · Cited by 36 · see citing works
Laski, F. A., Ganguly, S., Sharp, P. A., et al. (1989) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.86.17.6696 · Cited by 35 · see citing works
Chavatte, L., Kervestin, S., Favre, A., & Jean‐Jean, O. (2003) · The EMBO Journal · doi:10.1093/emboj/cdg146 · Cited by 35 · see citing works
Feasibility of nonsense mutation readthrough as a novel therapeutical approach in propionic acidemia
Sánchez-Alcudia, R., Pérez, B., Ugarte, M., et al. (2012) · Human Mutation · doi:10.1002/humu.22047 · Cited by 31 · see citing works
Suppression of Nonsense Mutations in the Dystrophin Gene by a Suppressor tRNA Gene
Kiselev, A., Ostapenko, O. V., Rogozhkina, E. V., et al. (2002) · Molecular Biology · doi:10.1023/a:1014238221426 · Cited by 28 · see citing works
Gong, Q., Stump, M. R., & Zhou, Z. (2010) · Journal of Molecular and Cellular Cardiology · doi:10.1016/j.yjmcc.2010.10.022 · Cited by 28 · see citing works
Harmer, S. C., Mohal, J. S., Kemp, D., et al. (2012) · Biochemical Journal · doi:10.1042/bj20111912 · Cited by 28 · see citing works
Yukihara, M., Ito, K., Tanoue, O., et al. (2011) · Biological and Pharmaceutical Bulletin · doi:10.1248/bpb.34.712 · Cited by 27 · see citing works
Inducing nonsense suppression by targeted pseudouridylation
Huang, C., Wu, G., & Yu, Y. (2012) · Nature Protocols · doi:10.1038/nprot.2012.029 · Cited by 26 · see citing works
Polyaspartic acid inhibits gentamicin-induced perturbations of phospholipid metabolism
Ramsammy, L. S., Josepovitz, C., Lane, B., et al. (1990) · American Journal of Physiology-Cell Physiology · doi:10.1152/ajpcell.1990.258.6.c1141 · Cited by 24 · see citing works
Heritability in the Efficiency of Nonsense-Mediated mRNA Decay in Humans
Seoighe, C., & Gehring, C. (2010) · PLoS ONE · doi:10.1371/journal.pone.0011657 · Cited by 23 · see citing works
Shalev, M., Kandasamy, J., Skalka, N., et al. (2012) · Journal of Pharmaceutical and Biomedical Analysis · doi:10.1016/j.jpba.2012.11.014 · Cited by 18 · see citing works
Simon, A. J., Lev, A., Wolach, B., et al. (2010) · PLoS ONE · doi:10.1371/journal.pone.0013659 · Cited by 18 · see citing works
Treatment of a methylmalonyl-CoA mutase stopcodon mutation
Buck, N. E., Wood, L. R., Hamilton, N. J., et al. (2012) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2012.09.133 · Cited by 16 · see citing works
Use of poly-l-aspartic acid to inhibit aminoglycoside cochlear ototoxicity.
Hulka, G. F., Prazma, J. P., Brownlee, R. E., et al. (1993) · PubMed · Cited by 15 · see citing works
Negamycin can restore dystrophin in mdx skeletal muscle
Arakawa, M., Nakayama, Y., Hara, T., et al. (2001) · Cited by 10 · see citing works
(2012) · Pediatric Pulmonology · doi:10.1002/ppul.22681 · Cited by 2 · see citing works
Khan (2000) · doi:10.1002/1531-8249(200008)48:2
Flagged first, then by citations
Cited by
Sorted by citations
A global genetic interaction network maps a wiring diagram of cellular function
Costanzo, M., VanderSluis, B., Koch, E. N., Baryshnikova, A., Pons, C., Tan, G., Wang, W., Usaj, M., Hanchard, J., Lee, S. D., et al. (2016) · Science · doi:10.1126/science.aaf1420 · Cited by 1,240 · see citing works
Therapies for rare diseases: therapeutic modalities, progress and challenges ahead
Tambuyzer, E., Vandendriessche, B., Austin, C. P., Brooks, P. J., Larsson, K., Miller Needleman, K. I., Valentine, J., Davies, K., Groft, S. C., Preti, R., et al. (2020) · Nature Reviews Drug Discovery · doi:10.1038/s41573-019-0049-9 · Cited by 357 · see citing works
- Authors
- Keeling, K. M., Xue, X., Gunn, G., & Bedwell, D. M.
- Affiliations
- University of Alabama at Birmingham (US)
- Venue
- Annual Review of Genomics and Human Genetics
- Publisher
- Annual Reviews
- Published
- 2014-08-31
- Volume
- 15
- Issue
- 1
- Pages
- 371-394
- ISSN
- 1527-8204 (ISSN-L)
- 1545-293X
- PMC
- PMC5304456
- OpenAlex
- W2126330038
- Cited by
- 306
- References
- 152
- Citations by year
- 2026: 20 · 2025: 18 · 2024: 21 · 2023: 26 · 2022: 33 · 2021: 33 · 2020: 28 · 2019: 30 · 2018: 25 · 2017: 30 · 2016: 26 · 2015: 14 · 2014: 2
- FWCI
- 2.26
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Annual Review of Genomics and Human Genetics (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- University of Pennsylvania
- National Institutes of Health
- National Institute of Neurological Disorders and Stroke (R21NS090928)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA and protein synthesis mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Research and Splicing
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genomics and Rare Diseases
- Keywords
- nonsense suppression, stop codon readthrough, premature stop codon, nonsense mutation, suppressor tRNA, pseudouridylation, nonsense-mediated mRNA decay, genetic disorders, translation termination
- MeSH terms
- Humans, Peptide Chain Termination, Translational, Protein Biosynthesis, Codon, Nonsense, Genetic Diseases, Inborn, Nonsense Mediated mRNA Decay
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review